The Ontology Service does not depend on AMBIT modules, and compiles into a different web application. It currently uses the Jena TDB persistence mechanism, and was initially designed as a proof-of-concept service to illustrate the added value of gathering RDF triples of several remote OpenTox services into the same triple storage and enabling SPARQL queries.

Download OpenTox Ontology service v.0.0.2

Deployment

Copy ontology.war under webapps directory of the servlet container. The application should be accessible at

http://localhost:8080/ontology

Configuration

Does not use MySQL database. Uses Jena TDB for persistent storage (file based), which is automatically generated on deploy. The following configuration files can be found under webapps/ontology folder. There are reasonable default values.