The study in railway system to apply a fuel cell system with high efficiency and mobility than other renewable energy is being actively conducted. It is needed a analysis on load characteristics and control method of rolling stock in order to apply to rolling stock. This paper presents study on control small-scale prototype power converter electric railway vehicle using fuel cell generation system. Experiment is conducted through real fuel cell generation system and reference speed applying the driving curve of the actual electric railway vehicle was applied. Also, output voltage of boost converter is controlled considering characteristic of fuel cell. And it was confirmed characteristic according to powering and regeneration of inverter.