Zea mays vs Vitis vinifera LastZ Results

Zea mays (Zea mays, B73_RefGen_v4) and Vitis vinifera (Vitis vinifera, 12X) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release 81. Zea mays was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 164,740

Genome coverage (bp)

Coding exon coverage (bp)

Zea mays

Uncovered: 2,087,384,281 out of 2,134,373,047Covered: 46,988,766 out of 2,134,373,047

Uncovered: 18,656,633 out of 48,311,124Matches: 19,534,860 out of 48,311,124Mismatches: 9,431,260 out of 48,311,124Insertions: 688,371 out of 48,311,124

Vitis vinifera

Uncovered: 422,264,897 out of 443,044,434Covered: 20,779,537 out of 443,044,434

Uncovered: 16,099,416 out of 30,493,931Matches: 9,515,767 out of 30,493,931Mismatches: 4,560,494 out of 30,493,931Insertions: 318,254 out of 30,493,931