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I've tried this myself (selecting 'Save with Affinity Layers' when prompted), but I don't get any corrupt TIF files, they can be opened in Affinity, Lightroom and Photoshop. Are you able to do a screen recording showing the process you are taking and the results please?

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I can't reproduce the corruption unfortunately for this file but I think I've identified what's happening with this.

If I use Lightroom to get Affinity to Edit the photo. All seems to work but the key is during the save process with Affinity.

The screencast will show that after Affinity saves a TIF file, if you close the program straight after the save dialogue box disappears. The TIF file will not be saved at all despite the program saying it is.

I think the corruption might sometimes occur when Lightroom decides to read the file at the same time as Affinity decides to save. Or sometimes another instance of Affinity in the background might lock the TIF file while a new instance is trying to save?