Remote will not operate

My remote will not work and it appears that I have lost all power to the passenger door. Window, lock,seat heater..... The drivers door is fine except that I cannot raise or lower the passenger window. I have replaced the battery in the primary remote and tried it and the secondary remote with the same results. All fuses appear OK...

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The vehicle is equipped with power door locks. Each lock actuator is powered and controlled by the door module mounted in the individual door. The driver door module (DDM) is the master control for the door lock system but the rear integration module (RIM) contains the program that determines when the lock functions are permitted. ( RIM ) is rear integrated module , under the back seat . Also a fuse box is also located under the back seat.
The door lock operation modes are controlled by the rear integration module (RIM). The RIM examines the requested function from the DDM, or the remote function actuator (RFA), as well as the transmission shift selector position and the ignition switch position information available over the Class 2 serial data circuits. The RIM determines if a locking function is permitted, and commands the DDM to perform the function permitted. The DDM then sends commands to the rest of the door modules via the SBI to implement the selected locking function.
The vehicle is equipped with power windows controlled by the door modules. The DDM receives a window switch request, over the SBI serial data, from either the passenger door module wired to the window switch pressed or from the driver door switch assembly. The DDM checks the Class 2 serial data to see if the status information is correct (i.e. ignition switch position) to permit window operation.
Your best bet is take the vehicle to the dealer or a repair shop that knows how the system works . Are you familiar with GM class 2 serial data communication network ? You could inadvertently render your vehicle unable to start an run if the class 2 bus were to become shorted to ground .
YouBuick Class 2 Operation Diagnosis 1998

If your alarm went off, it could be that someone had tried to break into your car. They most likely may have cut some of the wires inside your door with what ever device they may have been using. Look for evidence between the bottom of the windows and doors where the problem is. If not, then it is possible that your automatic window assemblies are malfunctioning. Do you hear the motors run on the windows when you go up or down with the switch? I also have a Pacifica, 2005, however no window problems yet.

This may be just a case of inadvertently hitting the window lock out n th driver door window switch by mistake. Check that first. Here's some background on window operation

Principles of Operation
The driver power window regulator motor is controlled directly by the master window/door lock/unlock switch (and its integrated "auto down" module). Power is supplied to the power window relay and the master window/door lock/unlock switch, and the passenger power window switch when the SEC/timer module grounds the coil side of the power window relay. The SEC/timer module will ground this relay when the ignition is in the ON position and will remain energized for approximately 15 minutes or until the driver or passenger door is opened.
The driver power window regulator motor is a reversible motor that is operated by applying power and ground to the motor leads to lower the window, and then reversing polarity on those leads to raise the window.
The passenger power window regulator motor is controlled directly by the passenger power window switch and can also be controlled by the master window/door lock/unlock switch. Power is supplied to the power window relay and the master window/door lock/unlock switch, and the passenger power window switch when the SEC/timer module grounds the coil side of the power window relay. The SEC/timer module will ground this relay when the ignition is in the ON position and will remain energized for approximately 15 minutes or until the driver or passenger door is opened.
The passenger power window regulator motor is a reversible motor, which is operated by applying power and ground to the motor leads to lower the window, and then reversing polarity on those leads to raise the window.
The power rear quarter glass is also directly controlled by the master window/door lock/unlock switch. The power rear quarter glass power latches also utilize reversible motors. The power rear quarter glass power latches are operated by applying power and ground to the motor leads to open the window, and then reversing polarity on those same leads to close the window.
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