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I have quite a few fave Legendary Pokemon, but here's my notable faves:

Latias and Latios
I love the designs of these two, and their type combo is pretty sweet. Dragon and Psychic were two types I wouldn't see together but this duo pull it off well with awesome stats all around.

Dialga, Palkia and Giratina
I loved most of Sinnoh's Legendaries and these guys are no exception. I love their epic designs and awesome attacks, not to mention you catch them before the end of the game, which makes them helpful to use against the Elite Four.

Uxie, Mesprit and Azelf
I love those cute, adorable Legendaries too. These guys are so cute and they have an awesome movepool, and Azelf's Nasty Plot makes it turn into a heavy hitter as well.

Victini
Oh god I love this cutie! Psychic and Fire were two types I thought would never get paired, but it pulls this combination off well not to mention its cry is one of the cutest ever!

Meloetta
Again, I love this one for its cry and also its personality in the anime.

Reshiram, Zekrom and Kyurem
Unova has some of the most epic Legendaries ever... and this trio of dragons really caught my eye, especially Reshiram.

For some odd reason, my fave Legendaries tend to be either Dragon or Psychic-type.

Regirock is my favourite, although if I have to choose a group it's all of the legendary golems :3 I don't like Regigigas at all, it's a ridiculous Pokémon, but I absolutely adore the original three golems. They're such cool Pokémon and I'm happy to use them in a team because they aren't completely over powered like most legendaries :3 I just think they're really well designed and it's a very interesting concept for Pokémon, so I love them. Specifically Regirock though because it just looks badass xD

All those years ago, way back in my Silver, I'd went around searching for the single Pokemon, which I so dearly wanted after I had seen it wipe out my my big brother's team multiple times in a battle against one of his friends, and as I at the time at least thought my brother's Pokemon were pretty strong, I thought that was pretty darn amazing. For those curious, (and to actually answer the question), that Pokemon was Lugia. And it's my favourite Pokemon. Period. In all seriousness, even though it was the first Pokemon I even got to see when starting up the game for the first time, I didn't even find it before I had beaten Red, which I'm still pretty surprised over, as knowing me, I usually go legendary hunting as early as possible. Anyways, once I had actually found Lugia, I was not the least bit surprised over how strong it actually were, as from what I mentioned above, someone beat my brother's team, which consisted of well trained, close to level 100 Pokemon, almost on its own. This is just for what I recall, but I'm pretty certain that was what happened lol. But yeah, it came to be the Pokemon I used the most throughout the time I played it, and I had it traded over to my brother's game before restarting to play the story again, as I wouldn't let that exact Lugia go.
I have great memories of using Lugia in my Silver, and though I may not own my Silver anymore, that's not something I'll easily forget.

I have good memories catching Ho-oh and Latias. Okay so... I was traveling with my family to the mountains. I remember being at a rest stop area. I had my trusty gameboy color with me. I was on the top floor of Tin Tower and there was the wonderful Ho-oh. I named it Howard after my dad's middle name. Well, I formed a habit of calling a Pokemon some name starting with their first letter (in this case, H). As for Latias, I was surfing west of Pacifidlog looking for the area to dive to start the Regi golem mission. I ran into Latias on the water. I chased her around for about an hour until I caught her using a Timer Ball (long battle!) on the route above Slateport. I named her Lilac!... And I caught many more Latias as time went on.

Mostly, I just love their designs in general and/or their representation in the anime. Except Arceus. His movie was just silly. He's still cool though! XD;

Ho-oh and Lugia! They're the prettiest of all the Pokemon, their designs are just wonderful. They fit so well with their region, too! The majesty of old-time legends, the look of power... just all of it is wonderful. I love that they put Ho-oh in the first episode of the anime as well, and the entire Lugia movie. Just wonderful. The memories, the feels!

That stunning,beautiful phoneix that caught my eye when I found it roaming in Sinnoh. I've always loved phoneixs, they just seemed beautiful and elegant to me so when I saw Moltres for the very first type,I loved it.

Also it was a unique typing Fire/Flying and could deal some serious damage and I thought it easily outpowered Ho-oh.I've also had a soft spot for the other legendary birds Articuno and Zapdos, their design was something I admired.

Other than that maybe Rayquaza. A sleek,cool-looking green dragon with weird symbols upon it's body?That is what makes an epic legendary.Also it's a big assistance if you catch it before the E4 and find yourself struggling to complete the game ^^.

Favorite Legendary group? Not the Legendary as an individual right? Well the individual goes to Latias, but then I'd have to say Latios too & he isn't that far up on the list either.

Ho-Oh & Lugia by far. They are both great mystical creatures & very, very powerful. Ho-Oh's Sacred Fire is..well..sacred! & Lugia's Aeroblast is one of a kind. To me, I find these two to be the best guardians among all Pokemon. So...yeah. They're amazing.

Mew will always be my favorite. She's cute and powerful. I remember going to some event somewhere (Best Buy?) to get this event Mew for Pokemon Blue Version. 3 hours in that line, lol. Now, I know the trick to glitch in Mew in Blue, which is awesome. Takes 5 minutes, haha.

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Thinking of you, wherever you are. We pray for our sorrows to end, and hope that our hearts will blend. Now I will step forward to realize this wish. And who knows: starting a new journey may not be so hard, or maybe it has already begun. There are many worlds, and they share the same sky - one sky, one destiny.

Lugia, followed by Victini, Shaymin, Articuno, and Suicune. Mew used to be my favorite but over the years other Legendaries have came along kind of pushing Mew to possibly being after Suicune. Nostalgia beside my favorite would have to be either Shaymin or Victini but that nostalgia and grace pushes Lugia to be juust a bit father than the other two. Also I really like it's shiny ok.

Everyone, they're all cool. But personally, everyone in the Hoenn games. The Golems have a mystery behind them. The Latis have their jet speed flight, telekinesis, invisibility, etc! The Weather Trio, is just plain awesome, especially design; favorite is Rayquaza. Deoxys, because of his stat prowess. Jirachi... GRANTS WISHES! and it's cute.

Giratina is my favourite; I love the design and the typing. Ghost/Dragon is one of the more interesting type combinations out there, and it looks suitably ominous in either of its forms. All hail the giant pharaoh caterpillar.

That said, I'm quite fond of Darkrai's wraith look (although its "legs" look weird) and I think Meloetta is actually quite cute as well, in her Aria form, at least...not too keen on the Pirouette form.

I really love strong and cute Pokemon. Even if theyr're not really well designed, I love how simple they're.
Shaymin and Celebi, because they're grass type. Which approximates also my favorite color :3
Both of them protecting humans and Pokemon, I mean at the good side of protecting.

About Victini, well...I've never imaginated that they will make a Fire/Psy type! And he's kinda so cuuute...! (too many cute...She's crazy)

But personally, Rayquaza is my top favorite. Everyone in Gen 3 is in second place.

Regis: The mystery behind them is so cool.
Latis: All of their abilities: invisibility, transform, telekinesis, etc!
Weather: Ruby was my first game so Groudon. Kyogre is still cool, I love riding the mechanical one in XD. Rayquaza, his super roar that saves Hoenn, design, just everything.
Deoxys: Stats, need I say more?
Jirachi: He lives in a crystal, wakes up every 1000 years for 1 week, grants wishes, and he's adorable.

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