Batchrun is a utility that allows you to create a batch file using a graphical interface.

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— My company is looking for software that will be able to create batch files that match the specifications for BSA e-filing/FinCEN. They are a government based program where financial institutions...

There is a page called FAQ page where multiple questions have been posted. You can find the answer to your inquiry on that page since it provides everything there is about BSA filling.
The Batchrun... application above is used to schedule and modify the behavior of Windows apps.
FAQ page for BSA e-filing/FinCeN: http://bsaefiling.fincen.treas.gov/FAQs.html
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