GREP2: GEO RNA-Seq Experiments Processing Pipeline

An R based pipeline to download and process Gene Expression Omnibus (GEO) RNA-seq data.
For a given GEO series accession ID, this pipeline generates metadata,
both gene and transcript level counts, and quality control (QC) report.
This package is mainly developed to process the GEO RNA-seq datasets
for the web platform GREIN. More details about GREP2 and GREIN can be
found here <doi:10.1101/326223>.