Human genome, assembly hg18.
This folder contains AUGUSTUS predictions run with different evidence as input:
- with evidence
The predictions in the folder usingEvidence were made using hints from several other UCSC tracks:
* Human mRNAs and Spliced Human ESTs aligned with BLAT
* TransMapped RefSeq genes from mouse, rat, zebrafish, chicken, cow, Xenopus tropicalis, dog and chimpanzee
* Retroposed Genes
* Exoniphy
They include both 5'UTR and 3'UTR predictions and alternative transcripts.
These are far more accurate than the ab initio predictions and more accurate than the de novo predictions.
- de novo
These predictions are de novo in the sense that no transcribed data was used. These
predictions use only the human genome sequence and evolutionary conservation. The
conservation information was extracted from the Exoniphy track from the UCSC genome
browser. Further, hints about retroposed genes were used, that are based only on
previous de novo predictions of AUGUSTUS. No transcribed sequences were used for this track.
The predictions incluce both UTRs. A single transcript per gene is predicted.
- ab initio
Only the human genome was used as input.