With massXpert 3.4.0 you actually have four programs in one :
With the XpertDef module you define brand new polymer chemistries (what are the atoms, what are the monomers that make the polymer, what are the chemical modifications that you might need to simulate biological or synthetic chemical reactions, what are the different ways you might need to cut a polymer sequence into pieces (chemical or enzymatic), what are the different ways tha...

Grain size analysis tests can include sieve data, washed sieve data, and hydrometer data as specified in ASTM Test Method D-422. There is no limit to the number of samples in a project and the number of tests per sample.Each grain size analysis chart is composed of three parts; a graph, an optional legend, and a header. The graphical windows interface displays the charts as they are entered and shows how the chart will look when it i...

Aladin 8.040 is an interactive software sky atlas allowing the user to visualize digitized astronomical images, superimpose entries from astronomical catalogues or databases, and interactively access related data and information from the Simbad database, the VizieR service and other archives for all known sources in the field (see available data). Created in 1999, Aladin 8.040 has become a widely-used VO portal capable o...

Slicer 3-3.7-alpha, or 3D Slicer 3-3.7-alpha, is a free, open source software package for visualization and image analysis. 3D Slicer 3-3.7-alpha is natively designed to be available on multiple platforms, including Windows, Linux and Mac Os X.
You may download different versions of Slicer 3-3.7-alpha3 and find pointers to the source code, mailing lists and bug tracker. Please note that Slicer 3-3.7-alpha continues to be a research package and is not intended for clinical use. Testing o...

WIKINDX 3_8_2 is a free bibliographic and quotations/notes management and article authoring system designed either for single use (on a variety of operating sytems) or multi-user collaborative use across the internet.<br />
<ul>
<li>can manage all my bibliographic data allowing me to search through them with an accuracy and speed that cannot be duplicated with index cards.</li>
<li>enables me to store unlimited ...

The Bayesian Filtering Library (BFL 0.8.0) [ref] provides an application independent framework for inference in Dynamic Bayesian Networks, i.e., recursive information processing and estimation algorithms based on Bayes` rule, such as (Extended) Kalman Filters, Particle Filters (or Sequential Monte Carlo methods), etc. These algorithms can, for example, be run on top of the Realtime Services, or be used for estimation in Kinematics & Dynamic...

Artemis 12 is a free genome viewer and annotation tool that allows visualisation of sequence features and the results of analyses within the context of the sequence, and also its six-frame translation. Artemis 12 is written in Java, and is available for UNIX, Macintosh and Windows systems. It can read EMBL and GENBANK database entries or sequence in FASTA or raw format. Other sequence features can be in EMBL, GENBANK or GFF format.

The G-InforBIO 1.90 system is a tool for genome data management and sequence analysis. The system can import genome data encoded as eXtensible Markup Language (XML) documents as formatted text documents, including annotations and sequences, from DNA Data Bank of Japan (DDBJ) and GenBank encoded as flat files. Genome database is constructed automatically after importing, and the database can be exported as documents formatted with XML or ...

More than a decade ago, at the end of the 80`s, the different molecular modelling programs have started widely to spread. These programs use different file formats to hold the coordinate and atomic data, and each formats follows unique syntax rules, which prevents the direct transfer of the molecules between the different applications. It was a serious drawback of the early programs, but even today there is a need for the transformation o...

Haploview 4.2 is a Java based tool for use by biologists in the study of genetic haplotype data.It provides a quick, easy interface to many common tasks involved in such analyses. Haploview 4.2 is designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks relating to such analyses.

FWTools 2.0.6 is a set of Open Source GIS binaries for Windows (win32) and Linux (x86 32bit) systems produced by me, Frank Warmerdam (ie. FW).The kits are intended to be easy for end users to install and get going with. No fudzing with building from source, or having to collect lots of interrelated packages. FWTools 2.0.6 includes OpenEV, GDAL, MapServer, PROJ.4 and OGDI as well as some supporting components.The FWTools 2.0.6 kits also aims to track th...

OpenEMR 4.1.2 is a free medical practice management, electronic medical records, prescription writing, and medical billing application. These programs are also referred to as electronic health records. OpenEMR 4.1.2 is licensed under the General Gnu Public License (General GPL).

Membrane Protein ExplorerMPEx 3.2 is designed for examination of membrane protein sequences using hydropathy-plot methods popularized by Kyte and Doolittle. That is, it is based on sliding-window analysis that represents an amino acid sequence as a sequence of numbers representing physical or statistical properties of the amino acid sequence.

GDAL 2.0.0 a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation.As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.

Gretl 1.9.2: Gnu Regression, Econometrics and Time-series LibraryGretl 1.9.2 is a cross-platform software package for econometric analysis, written in the C programming language. It is free, open-source software.You may redistribute it and/or modify it under the terms of the GNU General Public License (GPL) as published by the Free Software Foundation.

VisIt 2.7.1 is a free interactive parallelvisualization and graphical analysis tool for viewing scientific data on Unix and PC platforms. Users can quickly generate visualizations from their data, animate them through time, manipulate them, and save the resulting images for presentations. VisIt 2.7.1 contains a rich set of visualization features so that you can view your data in a variety of ways. It can be used to visualize scalar and vector field...

E-Cell Project 3.2.2 is an international research project aiming to model and reconstruct biological phenomena in silico, and developing necessary theoretical supports, technologies and software platforms to allow precise whole cell simulation. E-Cell Project 3.2.2 develops general technologies and theoretical supports for computational biology with the grand aim to make precise whole cell simulation at the molecular level possible.E-Cell System is a...

GenealogyJ 3.0 is a viewer and editor for genealogic data, suitable for hobbyist, family historian and genealogy researcher. GenJ supports the Gedcom standard, is written in Java and offers family tree, table, timeline views and more. GenJ is freesoftware so it can be redistributed and/or be modified under the terms of the GNU General Public Licence as published by the Free Software Foundation.

The increasing amount of genome sequence data is the basis for understanding life as a molecular system and for developing medical, pharmaceutical, and other practical applications. Since 1995 we have been developing knowledge-based methods for uncovering higher-order systemic behaviors of the cell and the organism from genomic and molecular information.The reference knowledge is stored in KEGG 74.0, Kyoto Encyclopedia of Genes and Genomes, an...

MapGuide Open Source 2.6 is a web-based platform that enables users to develop and deploy web mapping applications and geospatial web services. MapGuide features an interactive viewer that includes support for feature selection, property inspection, map tips, and operations such as buffer, select within, and measure.

GeoTools 2.7-M4 is an open source java GIS toolkit. Used for OGC based projects via GeoAPI interfaces. Includes two great SLD based renderers, raster access and reprojection. Plugns fo Shapefile, ArcGrid, ArcSDE, Postgis, OracleSpatial, MySQL and many more.

Sage 6.7 can be used to study elementary and advanced, pure and applied mathematics. This includes a huge range of mathematics, including basic algebra, calculus, elementary to very advanced number theory, cryptography, numerical computation, commutative algebra, group theory, combinatorics, graph theory, exact linear algebra and much more.

Taverna 2.2 is an open source family of tools for designing and executing workflows, created by the myGrid project and funded through the OMII-UK. Taverna 2.2 allows for the automation of experimental methods through the use of a number of different services (such as Web services) from a very diverse set of domains – from biology, chemistry and medicine to music, meteorology and social sciences.

Maxima sbcl-5.36.1 is a fairly complete computer algebra system written in lisp with an emphasis on symbolic computation. It is based on DOE-MACSYMA and licensed under the GPL. Its abilities include symbolic integration, 3D plotting, and an ODE solver.Maxima sbcl-5.36.1 is a system for the manipulation of symbolic and numerical expressions, including differentiation, integration, Taylor series, Laplace transforms, ordinary differential equations, systems o...

Sirius 1.2 is a component-based visualization framework designed for application in molecular modeling, drug discovery, protein structure analysis, as well as database mining and sequence-based work. It is equally suited for protein and small molecule construction and visualization.The primary features include:
full support for structure building from fragments and peptide editor
graphical front-end for Modeller
distance- and geometry-base...