pptx - NIMBioS

Biology Toolkit
Quantifying Biodiversity
+
+
+
=?
US Department of
Homeland Security
Goals:
1. Be able to define biodiversity
2. Be able to define species richness and
species evenness
3. Be able to use the equation called
Simpson’s Index of Biodiversity to explain
biodiversity in an area, and relate this index
to probability
What does biodiversity mean to you
?
What is Biodiversity to an Ecologist?
• Biodiversity is a measure of the different
kinds of organisms in a region or other
defined area.
• Biodiversity includes the number of species
and the distribution of individuals among
the species.
What is Biodiversity to an Ecologist?
• Biodiversity can also refer to
species’ range of adaptations,
which are traits that can be
behavioral, physical, or
physiological. These traits
enhance an organism’s fitness
(ability to pass on its genes to
another generation through
reproduction)
Darwin’s Finches
Biodiversity
Biodiversity takes into account:
• Species richness: the number
of species in a region or
specified area
Species
Number of
Individuals
E. Redbud
3
Black Oak
4
Post Oak
5
White Pine
3
Honey Locust
1
Biodiversity
Biodiversity takes into account:
• Species richness: the number
of species in a region or
specified area
• Species evenness: the degree
of equitability in the distribution
of individuals among a group of
species. Maximum evenness is
the same number of individuals
among all species.
Species
Number of
Individuals
E. Redbud
3
Black Oak
4
Post Oak
5
White Pine
3
Honey Locust
1
Biodiversity
Biodiversity takes into account:
• Species richness: the number
of species in a region or
specified area
• Species evenness: the degree
of equitability in the distribution
of individuals among a group of
species. Maximum evenness is
the same number of individuals
among all species.
Species
Number of
Individuals
E. Redbud
5
Black Oak
5
Post Oak
5
White Pine
5
Honey Locust
5
Okay, Ecologists … Get ready for data!
An ecologist goes out into the field and collects information from
two separate plots of the same size but with one big
difference: Plot 1 is in the woods and Plot 2 is in a pasture.
The ecologist is interested in the types of insects that are
found in the plots and whether there is a difference between
the two plots.
What will we find out?
First! Make Your Hypothesis
• A hypothesis is an educated guess based on
knowledge
• A hypothesis can be either accepted or
rejected based on the collected data and data
analysis
• Based on the hypothesis, predictions can be
made about answers to biological questions.
Examples of Hypotheses
There is water on Mars. True! Almost all of it is ice. Source: NASA
The global temperature of our planet has risen. True! Between 1906 and
2007, the global surface temperature has risen 0.74ºC [±.18]. Source: IPCC
More people in this room like Justin Bieber than do not like him. Test
it out – what did you find?
What would be a good hypothesis for our
ecologist?
Examples of Hypotheses
There is water on Mars. True! Almost all of it is ice. Source: NASA
The global temperature of our planet has risen. True! Between 1906 and
2007, the global surface temperature has risen 0.74ºC [±.18]. Source: IPCC
More people in this room like Justin Bieber than do not like him. Test
it out – what did you find?
What would be a good hypothesis for our
ecologist?
Field Data
Species
Plot 1 Woods
Plot 2 field
Centipedes
50
10
Millipedes
36
50
Butterflies
35
0
Lady bugs
55
39
Based on the data:
• Which plot has more species richness?
• Which plot has more species
evenness?
• Which plot has more biodiversity?
Answers:
• Plot 1, the woods, has more species richness. In plot
2, the pasture, there are no butterflies. Plot 1 has 4
species while Plot 2 only has 3 species present.
• Plot 1 also has more species evenness. There is
close to the same number of individuals in each
group.
• Therefore, plot 1 is more diverse than plot 2 because
species richness is higher and the species are more
evenly distributed
What if your data looked like this?
Species
Plot 1 Woods
Plot 2 field
Centipedes
50
1
Millipedes
36
1
Butterflies
35
30
Lady bugs
55
39
Grasshoppers
0
40
What if your data were more complicated?
Species
Plot 1 Woods
Plot 2 field
Centipedes
50
1
Millipedes
36
Butterflies
35
Lady bugs
55
39
Grasshoppers
0
40
Maybe
more
evenness?
1
30
Maybe
more
richness?
Which one has more biodiversity now?
Sometimes it isHugh
difficult toSimpson’s
compare two or more
items
Edward
Idea
when talking to more than one person. One person’s
notion ofneeded
“large”a may
be another
person’s
“small”,
•Scientists
universally
recognized
method
of so in
order for scientists to understand each other, items can
comparison.
measured
counted incame
a wayupthat
is an
universal
•Inbe
1949,
a Britishorstatistician
with
idea heto
everyone.
In order
understand how diverse an area is
published
in the
journaltoNature:
weIn
can
do ato
math
problemhow
thatdiverse
shows us
terms
ofcan
a
order
understand
an in
area
is we
probability
how
diversethat
theshows
area is.us in terms of a
do a math
problem
probability how diverse the area is!
Lets stop here and talk about probability!
Plot 1!
Plot 2!
Let’s Review Probability:
Probability is a way of expressing likelihood that an event will occur
For example: If I toss a coin how what is the probability of the coin landing on heads?
• Heads
• Tails
One side of the quarter is heads and the other side of the quarter is tails, so we can
say you have a half or ½ or 0.5 or 50% chance of the quarter landing on the heads
side. Another way you can say this is you are about 50% sure the quarter will land on
the side with the head.
Simpson’s Index of Biodiversity
Simpson’s Index is a way to express how diverse a sample is based on a probability.
The probability can be explained as follows:
If you close your eyes and pick out an individual organism from a sample and then you
repeat by closing your eyes and picking out another individual from your sample, what
is the probability that the organisms will be different species?
If the probability is high, for example 0.8 then you have an 80% chance of picking out
different species so you have high diversity in your sample.
1st Draw
Same or Different?
2nd Draw
Simpson’s Index of Biodiversity
Let’s define the variables:
D= Simpsons Index of Diversity
Σ = summation
S= number of species
ni= number of individuals within the ith species
N= total number of individuals within the
sample
Sigma What?
• Let’s say you wanted to sum up a sequence of numbers:
species1 + species2 + species3 + …+ ni +…+ nS
• What mathematical notation would you use to make it
easier to write that?
Sigma What?
• Let’s say you wanted to sum up a sequence of numbers:
species1 + species2 + species3 + …+ ni +…+ nS
• What mathematical notation would you use to make it
easier to write that? Summation Notation
• Read it: “the sum of ni, from i = 1 to S, where S is the
total number of species”
D= Simpsons Index of Diversity
Σ = summation
S= number of species
ni= number of individuals within the ith species
N= total number of individuals within the
sample
Let’s calculate D for plot 1:
First do the numerator (top part):
*Use each observation to get count n, then
multiply it by (n-1) and add those products
together.
=(50(50-1)+36(36-1)+35(35-1)+55(55-1))
=50(49)+36(35)+35(34)+55(54)
=2450+1260+1190+2970
=7870
Next, let’s calculate the denominator:
Remember N = total number of individuals
counting all species in your plot.
In plot 1:
50+36+35+55=176=N
For the denominator we have to calculate:
N(N-1) = 176(175)=30,800
Next let’s put it all together:
D = 1 - (0.256)
D = 0.744
So what does this mean? If you randomly pick two individuals in plot 1 you have
a 74.4% chance of those two individuals being different species. We can say the
diversity in the plot is high.
ON YOUR OWN:
Can you calculate Simpson’s Index for Plot 2?
Remember:
Start with the numerator
Then calculate the denominator
Then divide the numerator by denominator
Then subtract your fraction from 1
Which plot is more diverse based on your calculations?
Does this support or refute your hypothesis?
Looking for More?
• Check out our second
biodiversity module on
real salamander data!
• Look up on your own:
Shannon’s Index of
Biodiversity
• Real datasets to
compare available at
www.handsontheland.org
For The Biodiversity Module & More:
• Website:
www.nimbios.org
• See what we’re all
about
• Sign up for our
bimonthly email
newsletter
• Check our blog