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rxnconcompiler 1.1.0

rxnconcompiler is an iterative network building tool for Systems Biology.

Magdalena Rother, Sebastian Thieme, Ulrike Muenzner and Marcus Krantz

USAGE

Get help:

python interface.py -h

Generate bngl file:

python interface.py ‘A_ppi_B; ! A–C’ [-o output_file.name]

Generate json file:

python interface.py ‘A_ppi_B; ! A–C’ –json [-o output_file.name]

Generate file with rxncon quick text:

python interface.py ‘A_ppi_B; ! A–C’ –json [-o output_file.name]

LEGAL DISCLAIMER

rxnconcompiler is released under the GPL license, a copy of which
is included in the distribution (See COPYING for details).

This software is provided “as-is”. There are no expressed or implied
warranties of any kind, including, but not limited to, the warranties of
merchantability and fitness for a given application. In no event shall
the authors be liable for any direct, indirect, incidental, special,
exemplary or consequential damages (including, but not limited to, loss
of use, data or profits, or business interruption) however caused and on
any theory of liability, whether in contract, strict liability or tort
(including negligence or otherwise) arising in any way out of the use
of this software, even if advised of the possibility of such damage.

The authors take no responsibility for damage caused by this program
or its components.

CREDITS

Magdalena Rother - architecture and unit tests and implementation

Sebastian Thieme - model validation and testing

Falko Krause - rxncon_parser.py (modified by MR)

Ulrike Muenzner - contribution into concepts

Marcus Krantz - concept and supervision

ACKNOWLEDGEMENTS

Credit goes to our colleagues Falko Krause, Max Floettmann,
David Jesinghaus, and Janina Linnik for their comments,
ideas and support during development.