Oryza sativa Japonica Group vs Amborella trichopoda LastZ Results

Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Amborella trichopoda (Amborella trichopoda, AMTR1.0) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release . Oryza sativa Japonica Group was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 125,838

Genome coverage (bp)

Coding exon coverage (bp)

Oryza sativa Japonica Group

Uncovered: 346,314,506 out of 375,049,285Covered: 28,734,779 out of 375,049,285

Uncovered: 15,774,107 out of 34,403,043Matches: 12,116,866 out of 34,403,043Mismatches: 6,110,455 out of 34,403,043Insertions: 401,615 out of 34,403,043

Amborella trichopoda

Uncovered: 682,484,550 out of 706,332,640Covered: 23,848,090 out of 706,332,640

Uncovered: 10,685,047 out of 25,807,211Matches: 9,901,226 out of 25,807,211Mismatches: 4,901,839 out of 25,807,211Insertions: 319,099 out of 25,807,211