Interpro2GO

Classifies sequences into protein families and predicts the presence of important domains and sites. InterPro is an integrated resource of protein families, domains and sites which are combined from a number of different protein signature databases, including: Gene3D, Panther, PRSF, Pfam, PRINTS, ProSite, ProDom, SMART, SUPERFAMILY and TIGRFAMs. InterPro2GO creates annotations from data of InterPro. Gene Ontology terms assigned by InterPro2GO are cross-referenced more than 168 million times in UniProtKB, providing terms for almost 50 million individual proteins.

Publication for Interpro2GO

Interpro2GO citations

(58)

library_books

An Updated Functional Annotation of Protein Coding Genes in the Cucumber Genome

2018

Front Plant Sci

PMCID: 5863696

PMID: 29599790

DOI: 10.3389/fpls.2018.00325

[…] el” species or in newly sequenced genomes rely on homology transfer based on sequence similarity, including Blast2GO (Conesa et al., ), identification of conserved domains (Rentzsch and Orengo, ) and InterPro2GO (Burge et al., ). In addition, OrthoMCL (Li et al., ) has been used to identify orthologous relationships between several related genomes using the Bidirectional Best Hits (BBH) strategy a […]

[…] onal annotations from these databases to experimentally identified proteins are often database-specific, such as the eggNOG-mapper [] and InterProScan []. In addition, MEGAN6 can be used to carry out InterPro2GO, KEGG, SEED and EggNOG analysis to determine the distribution of functions amongst expressed proteins in the microbiome []. Beyond mapping functional annotations to identified proteins, vi […]

Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium

2017

Genome Biol Evol

PMCID: 5739047

PMID: 29220487

DOI: 10.1093/gbe/evx255

[…] mappings between those method results and GO terms as provided by Uniprot-GOA for electronic annotation methods (http://www.ebi.ac.uk/GOA/ElectronicAnnotationMethods, last accessed December 7, 2017): InterPro2GO, HAMAP2GO, EC2GO, UniprotKeyword2GO, UniprotSubcellular_Location2GO. The annotation data set was limited to the electronically inferred data to avoid biases in the annotation of certain mo […]

library_books

Development of an Efficient Protein Extraction Method Compatible with LC MS/MS for Proteome Mapping in Two Australian Seagrasses Zostera muelleri and Posidonia australis

2017

Front Plant Sci

PMCID: 5559503

PMID: 28861098

DOI: 10.3389/fpls.2017.01416

[…] as calculated using the ExPASy tool (http://web.expasy.org/compute_pi/). The identified proteins were further annotated using InterproScan (Finn et al., ). The Gene Ontology terms were inferred using Interpro2GO (Gene Ontology Consortium, ). Subcellular localization of the proteins was assigned using Plant-mLoc (http://www.csbio.sjtu.edu.cn/bioinf/plant-multi/) and manually translated to Gene Onto […]

library_books

Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant parasitic nematodes

2017

PLoS Genet

PMCID: 5465968

PMID: 28594822

DOI: 10.1371/journal.pgen.1006777

[…] thresholds and parameters. A gene ontology annotation was inferred from the Pfam protein domain annotation using the pfam2go mapping file maintained at the gene ontology portal and generated from the InterPro2GO mapping []. Gene ontology terms were also mapped on the generic GO-slim ontology using the GOSlimViewer utility developed as part of AgBase []. […]