ACCORD is a C library for composition of SEM or scanning helium-ion microscope images with correction of drift. It is able to compose (average) large sets of extremely noisy images that were acquired by scanning charged-particle microscopes at the highest possible speeds (lowest pixel-dwell times). If the images are composed using traditional techniques, they usually become extensively blurry. The technique that is implemented in this software corrects these derogations by pre-shifting the composed frames.

AGM Build is a molecular builder and
conformational editor. It can be used for
interactive model preparation for molecular
dynamics simulations, including association of
atom types and partial charges. It features
geometry editing, lattice building, building of
chain molecules (e.g. proteins), chains with
predetermined conformations, and charges and atom
types according to selected Force Field.

APBS is a software package for the numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Continuum electrostatics plays an important role in several areas of biomolecular simulation, including simulation of diffusional processes to determine ligand-protein and protein-protein binding kinetics, implicit solvent molecular dynamics of biomolecules, solvation and binding energy calculations to determine ligand-protein and protein-protein equilibrium binding constants and aid in rational drug design, and biomolecular titration studies.

Animath is a 2D/3D Finite Element Method library
entirely implemented in C++. It is suited for
fluid-structure interaction simulation, and it is
mathematically based on higher-order tetrahedral/triangular
elements. It provides front-ends to matrix solvers
and mesh generators.

The Artificial SEM Image Generator (artimagen) library generates artificial scanning electron microscope (SEM) and helium-ion microscope images of various samples, including gold-on-carbon resolution samples and some semiconductor
structures. Numerous effects that appear in real SEMs are simulated (noise, drift-distortion, edge-effect, etc.), which enables assessment
of imaging, metrology, and other techniques that work with SEM micrographs. Unlike the real SEM images, the artificial images exhibit defined types and amounts of these effects, which is their key
advantage.

BioMAJ (BIOlogie Mises A Jour) is a workflow
engine dedicated to data synchronization and
processing. It automates the update cycle and the
supervision of the locally mirrored data
repository. The application is generalist, but was
applied in the bioinformatics field for biological
data bank management. The packaging includes
workflow and indexing post-processing scripts for
most used biological data banks. Developed in Java
and Ant, the application is compatible with
various Unix-based systems.

CONSIDEO MODELER allows you to mindmap a complex
problem, analyse it qualitatively to discover
levers and bottlenecks, and even to simulate it by
automatically building a system dynamics model.
One can integrate any external data and setup a
customized management cockpit for playing out
scenarios. It is useful for organizational
problems, project management, financial analysis,
production processes, score cards, and much more.