Structural Similarities for the Entities in PDB 4J84

The following structural similarities have been found using the jFATCAT-rigid algorithm
[1,2].
To reduce the number of hits, a 40% sequence
identity clustering has been applied and a representative chain taken from each cluster.
If the representative chain consists of multiple domains, each domain is
included in the search. If available, the SCOP 1.75 domain assignment [3] is used.
Otherwise algorithmic domain assignments are computed
using the ProteinDomainParser [4].

Entity #1: Chains: A,B

Description:

Coatomer subunit beta' protein

Length:

301

No structure alignment results are available for
4J84.A, 4J84.B
explicitly.

These chains are
represented by chain
4J78.A
which is 100% sequence identical.

%ID:
% sequence identity in the
alignment. A 40% sequence identity
filter is applied before the structure
alignments are calculated, so most
results show low similarity. If the
sequences are of vastly different
lengths, the clustering procedure will group
them in different clusters, even if they share
a region of high sequence similarity.

%Cov1: The coverage, or %, of aligned residues in chain 1

%Cov2: The coverage, or %, of aligned residues in chain 2

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