Update
UniMoG has been extended by uniform sampling for the DCJ sorting.
Also DCJ-indel distance and sorting
are now available!

UniMoG

UniMoG is a software tool unifying five genome rearrangement distance models:
double cut and join (DCJ), restricted DCJ, Hannenhalli and Pevzner (HP), inversion only
and translocation only. It allows computing all of these five distances between pairs
of genomes. Furthermore, an optimal sorting scenario transforming the first genome of
the pair into the second one is returned. The input is not limited to one pair and can
handle an arbitrary number of genomes (at least two).

DCJ

The old DCJ tool, which is also available here, is only capable of computing the DCJ
distance between two genomes and an optimal sorting scenario that transforms one genome
into the other.