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To confirm, yes there's no need to build with my nightly images up but you can still build if you want to use a different kernel or any other reason really.
We merged my installer into the master branch of offensive security's kali-nethunter github, so it might be a *little* bit different.
Basically:

Would be enough to generate a flashable zip with a NetHunter kernel for your device, SuperSU, and all the apps.
If you want the chroot as well (you do), you will probably want to download the full chroot from the link polob12 mentioned. It's Kali Rolling, rather than the Sana one that is downloaded by the app. (currently, Rolling works better with NetHunter nightly)

Also, to clarify, idleKernel is the unofficial domain used to host nightlies generated by me (and is the name of the kernel in the Galaxy Note 3 / hlte images only)
Most other kernels are based off CyanogenMod or AOSP sources.

Member of the Kali NetHunter developer team. You can contribute to Kali NetHunter too!
We accept pull requests!
Find my GitHub account: jcadduono

To confirm, yes there's no need to build with my nightly images up but you can still build if you want to use a different kernel or any other reason really.
We merged my installer into the master branch of offensive security's kali-nethunter github, so it might be a *little* bit different.
Basically:

Would be enough to generate a flashable zip with a NetHunter kernel for your device, SuperSU, and all the apps.
If you want the chroot as well (you do), you will probably want to download the full chroot from the link polob12 mentioned. It's Kali Rolling, rather than the Sana one that is downloaded by the app. (currently, Rolling works better with NetHunter nightly)

Also, to clarify, idleKernel is the unofficial domain used to host nightlies generated by me (and is the name of the kernel in the Galaxy Note 3 / hlte images only)
Most other kernels are based off CyanogenMod or AOSP sources.

Install full chroot (not sure if needed but i did, gave some errors but ignore that) >> from here

I did not yet have time to do tests but it boots up perfectly and nethunter apps are available so all looks like a good starting point.

Happy hunting !

Thank you for that Link.

I also am using a Nexus 5X. and use a custom rom from XDA, as minimal as possible because i want a naked android.

Question, I was looking for the minimal version as i read on the Kali Nethunter Wiki : You are given two chroot options to download or install: minimal or full. The minimal chroot, which is a little over 100mb in size, is a barebones basic Kali OS with nothing installed and is great for developers .

I am looking for exactly this. My Nexus 5X is already rooted and running a custom rom, can i flash this using TWRP on my Nexus, or do I need to go the whole pathway.

Second question, if I open that file, can i remove the apk's from "Data/app" folder? as I am not interested in them. Personally yes, but for my little project not.

Sorry for the many questions I hope someone will help me through this!