Hi Edward,
I had a related question- is it possible to have env. variables evaluated
> in an eff file?
> (Like in cns, {===>} parameter_infile_1="CNS_TOPPAR:protein_rep.param";,
> CNS_TOPPAR is env var)
>I'm afraid no.
> If not, do command line parameters override what is in the eff file? Like:
>Yes, whatever is in command-line arguments overrides values in .eff file.
I think simple bash/tsch script would be the easiest way to solve the
original Andrew's problem.
Best regards,
Oleg Sobolev.
>> On 11/29/2016 05:21 PM, Andrew Morin wrote:
>>> Hello,
>>>> I am trying to find a convenient way to generate maps using
>> phenix.mtz2map at increasingly greater values of d_min.
>>>> For example:
>>>> I have a .mtz file of a structure solved at 2.4A. I run phenix.mtz2map
>> with d_min=none and obtain a map using all of the resolution data. I would
>> like to also create 10 more maps with d_min = 3.4, 4.4, 5.4, 6.4,...12.4A.
>> An mtz of 1.7A would increment at 2.7, 3.7...11.7A, etc.
>>>> Might anyone know of a handy way to automate this over a large number of
>> mtz files?
>>>> ALTERNATIVELY - I am performing a phenix.cut_out_density step prior to
>> this. So if it might be easier to automate a incrementing high resolution
>> cutoff in phenix.cut_out_density, that would also work.
>>>> Thanks for your help.
>>>> -Andrew
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