seqpup covers all but #5 of your points, I believe. Find it at
ftp://iubio.bio.indiana.edu/molbio/seqpup/
There should be a significant update out in the next couple
of weeks.
In article <DKpE12.3xp at liverpool.ac.uk>, Andy Bates <bates at liv.ac.uk> wrote:
>help teach students the delights of DNA (and protein) sequence
>analysis. It needs to be:
>>1. DOS/Windows
>2. free
>3. able to find restriction sites and search for short strings with
>mismatches/gaps
>4. able to find ORFs and translate them
>5. hopefully able to give some details of the hypothetical proteins,
>e.g. mol wt., amino acid composition.
--
-- d.gilbert--biocomputing--indiana u--bloomington--gilbertd at bio.indiana.edu