Download AlignmentWe filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

Length:

224 (215)

Sequences:

146 (87.8)

Seq/Len:

0.679

Nf(neff/√len):

6.0

HHblits Results: (2016_02)
Sequences per length for each position, BEFORE the coverage/gap filter was appliedLegend: Dots above the red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len (which after applying the coverage filter is at: 0.679).

Sequences per length for each position, AFTER the coverage/gap filter was appliedLegend: If visible, the positions blocked in grey are regions that have > 75% gaps and were automatically trimmed and excluded in the GREMLIN analysis.

Trim query

Generate MSA using:

Filter MSA

GREMLIN

Start:

End:

E-value:

Iterations:

Coverage:

Remove gaps:

Prior:

GREMLIN Results:

No predictions exist for 1500417152

Not enough sequences to perform GREMLIN analysis on (0.679 < 1).

We would recommend increasing the e-value to 1E-4 and/or the number of iterations.