As our modules are overlapping, we present here a list of all the modules that have a signficant overlap in their member genes. To do this, we computed the pvalue of the overlap between any two modules using the hypergeometric distribution, and applied a False Discovery Rate (FDR) correction for multiple hypotheses with p<0.01. A list of all such significant overlaps, sorted by pvalues is shown in the table below.
We also present the results as a matrix, in which a colored entry represents two modules that significantly overlap and the intensity represents the fraction of genes in the overlap. The matrix is clustered to reveal significant patterns.