Databases

Coexpression

Proteins whose genes are observed to be correlated in expression, across a large number of experiments.

STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:query proteins and first shell of interactors

white nodes:second shell of interactors

Node Content

empty nodes:proteins of unknown 3D structure

filled nodes:some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PBAL39_21655

Uncharacterized protein (239 aa)

Predicted Functional Partners:

PBAL39_21650

DedA (224 aa)

0.632

PBAL39_21660

DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (374 aa)

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1

node2

node1 annotation

node2 annotation

score

PBAL39_21650

PBAL39_21655

DedA

Uncharacterized protein

0.632

PBAL39_21655

PBAL39_21650

Uncharacterized protein

DedA

0.632

PBAL39_21655

PBAL39_21660

Uncharacterized protein

DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA

0.500

PBAL39_21655

PBAL39_21665

Uncharacterized protein

Possible gliding motility protein, possible ABC-related protein

0.437

PBAL39_21655

PBAL39_21670

Uncharacterized protein

ABC transporter permease gliding motility-associated protein

0.437

PBAL39_21660

PBAL39_21655

DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA

Uncharacterized protein

0.500

PBAL39_21660

PBAL39_21665

DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA

Possible gliding motility protein, possible ABC-related protein

0.852

PBAL39_21660

PBAL39_21670

DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA

ABC transporter permease gliding motility-associated protein

0.831

PBAL39_21665

PBAL39_21655

Possible gliding motility protein, possible ABC-related protein

Uncharacterized protein

0.437

PBAL39_21665

PBAL39_21660

Possible gliding motility protein, possible ABC-related protein

DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA

0.852

PBAL39_21665

PBAL39_21670

Possible gliding motility protein, possible ABC-related protein

ABC transporter permease gliding motility-associated protein

0.997

PBAL39_21670

PBAL39_21655

ABC transporter permease gliding motility-associated protein

Uncharacterized protein

0.437

PBAL39_21670

PBAL39_21660

ABC transporter permease gliding motility-associated protein

DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA

0.831

PBAL39_21670

PBAL39_21665

ABC transporter permease gliding motility-associated protein

Possible gliding motility protein, possible ABC-related protein

0.997

Network Stats

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Functional enrichments in your networkNote: some enrichments may be expected here (why?)

Enrichment analysis is still ongoing, please wait ...

Statistical background

For the above enrichment analysis, the following statistical background is assumed: