I didn't do too well. I used tsMuxer to join the 16 m2ts files in the STREAM folder which resulted in one file called Test.m2ts, size=945,804 KB. When I open this file in VLC, it opens 14 VLC dialogs and the CPU max's out to 100%.

Thanks guys. I gave up trying to join the individual video streams and used Handbrake to convert each one. I'll then pop them into Vegas Video and join them that way, with a little bit of editing as well! Thanks again!