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The Bank of America Center, or 555 California Street, was a skyscraper that existed as early as the 20th century on California Street. For the prime universe, up to the late 24th century, this building was one of the tallest structures in the city.

At least part of the Embarcadero Center still seemed to exist in 2259 of the alternate reality, although the buildings closest to the San Francisco Ferry Building appeared to have been replaced by a newer, much taller skyscraper. (Star Trek Into Darkness)

By 1986, Fort Mason no longer had a military function; it houses instead a large number of cultural and social institutions. In the picture provided here, the white building in the center of the image is the San Francisco Fire Department Pumping Station #2. The red-roofed building on the extreme right is a small part of the building complex that now houses the Fort Mason Center.

The Golden Gate seen from the West, with San Francisco on the left (green bottom half of the picture is the Presidio). Top right is Yerba Buena Island, with the larger Treasure island directly to the left. The small island center right is Alcatraz, while the much larger island to its left is Angel island.

This island was first seen in the director's edition of Star Trek: The Motion Picture. In the alternate reality, the bridge wasn't on the map, implying that something had happened to the bridge since the 2150s when it was last seen in "Affliction", and that in the 2250s that Yerba Buena Island wasn't connected to the rest of the bay by ground traffic.

Furthermore, Hoyt Street was referenced on a pawn ticket prop for Feinberg's Loan and Pawn that appears to have not been seen on screen. According to the ticket, the address for the shop was 180 Hoyt Street. In the movie the shop is shown to be on Columbus Avenue (both the actual filming location and identified as such by signage).