Arabidopsis thaliana vs Trifolium pratense LastZ Results

Arabidopsis thaliana (Arabidopsis thaliana, TAIR10) and Trifolium pratense (Trifolium pratense, Trpr) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release . Arabidopsis thaliana was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 146,024

Genome coverage (bp)

Coding exon coverage (bp)

Arabidopsis thaliana

Uncovered: 83,379,556 out of 119,667,750Covered: 36,288,194 out of 119,667,750

Uncovered: 9,228,356 out of 33,775,569Matches: 15,981,393 out of 33,775,569Mismatches: 8,005,421 out of 33,775,569Insertions: 560,399 out of 33,775,569

Trifolium pratense

Uncovered: 262,307,365 out of 304,842,038Covered: 42,534,673 out of 304,842,038

Uncovered: 15,071,704 out of 41,242,947Matches: 17,364,740 out of 41,242,947Mismatches: 8,113,715 out of 41,242,947Insertions: 692,788 out of 41,242,947