454 Reads

454 reads were sequenced at SkuldTech, see Abril et al 2010 for further information. They were mapped over the Smed454_90e contigs using BWA, then processed with SAMTOOLS to convert alignments in SAM format into sorted BAM and to extract the PILEUP for the coverage graph. You can get further details about the reads by clicking on them, such action will open a details page showing mapping coords info, the alignment of the read and the contig, as well as the fasta sequence for the read at the bottom.