The Master of Science in Architecture (M.sc) program is particularly appropriate for graduates with a B.sc professional degrees in architecture (or equivalent degrees in related fields). The program composed of 33 credit hours, 9 credit hours are a written thesis, requiring a minimum of two years for completion. The program allows for interdisciplinary skill-building and new knowledge integration in order to advance design expertise beyond the generalist education of a professional degree. With focused subject matter, the program develops participants' skills in design thinking and analysis and innovative approaches to design practice.

The Master of Science in Chemical Engineering is designed for students with an undergraduate degree in engineering disciplines (Chemical Engineering, Mechanical Engineering, and Process Engineering) who wish to get a graduate degree in chemical engineering. The program consists of 33 credits in chemical engineering including 18 credits of core courses, 6 credits of elective courses and 9 credits of thesis research. The core courses provide a more comprehensive foundation in chemical engineering principles (thermodynamics, reaction engineering, Engineering mathematics, Mass Transfer, and transportation phenomena). Furthermore, in the thesis dissertation students select a research advisor and area for specialization. The thesis may involve either theoretical or experimental investigations, or both. It can be of a limited scope but should involve a significant degree of originality.

The student of this program is introduced to advanced topics in hydraulics, hydrology and environmental engineering and studies. The total number of credit hours is 33 from which 9 are the thesis that is proposed by the student as a conclusion for study program.

This Masters program offers advanced knowledge in multiple aspects of transportation major of civil engineering. Examples: Transportation Systems and patterns, highway and traffic studies, transportation modeling and analysis, and several others. The total number of credit hours is 33 from which 9 are the thesis that is proposed by the student as a conclusion for study program. Graduates of the MSc in Civil Engineering/Transportation program have greater opportunity to advance through their career and best suited to fill higher ranked job positions in the transportation sector of CE.

Given the domestic demand and regional growing for specialized skills in engineering and computer networks, came the establishment of Master's program in "Computer Engineering and Networks" in collaboration with the Electrical Engineering Department at the School of Engineering at the University of Jordan. There are several objectives of the program, the most important is the preparation of engineers specializing in scientific research in the field of computer engineering and networks, as well as contribute to finding solutions to technical problems facing the industrial sector in the Kingdom. This program is accepting 20 students in the thesis track. The Thesis track consists of (24) credit hours of coursework and a thesis with the equivalent of nine credit hours.

There are two options for obtaining an M.Sc. degree in Electrical E​ngineering (Communications): a degree with a Thesis, or a degree with a Comprehensive Examination. The Thesis track consists of (24) credithours of coursework and a thesis with
the equivalent of nine credit hours. The Comprehensive Examination track
consists of (33) credit hours of coursework
and the requirement of passing a comprehensive examination.

​Due to the fact that the concept of energy is of
international concern, the electrical power systems which utilize energy,
transfer and distribution it became of special concern and interest.
Consequently, the M.sc program in electrical power systems is advanced program
in electrical power systems and it consists of Mandatory and elective courses
in the planning and operation of generation, transmission and distribution of
such systems. Also, it contains state up of the art topics such as renewable
energy, smart grid and restructuring of power systems which are of national,
regional and international interest. ​​