WG protecting when not logged in?

I am running a FTP server and since I am basically the only one who physically logs in for maintenance thus logs out when completed, is WG still protecting the system or does someone have to be physically logged into the desktop?

My backup and Virus protection program run in the background since they are a service though I am uncertain about WormGuard.

I am running a FTP server and since I am basically the only one who physically logs in for maintenance thus logs out when completed, is WG still protecting the system or does someone have to be physically logged into the desktop?

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Yes, you will need to be logged on for the WG hook to be initialised as it does not run as a service.