1600
(6 years ago)
by jmduarteg:
Tagging for eppic release 1.9.6.
- totally redone interface calculation: huge improvements in runtime and memory usage, explores also 2nd neighbours, uses symmetry-redundancy elimination, bugs fixed
- introduced minimum ASA threshold for considering residue at surface
- cofactors can now be used for ASA calculation in interfaces
- blast runner now chooses matrix to use based on sequence length as it is standard use in blast servers
- introduced blast+ support
- introduced clustalo support in HomologsList
- improvements and important fixes in HomologsList alignments

1619
(6 years ago)
by jmduarteg:
Fixed bug in ASA calculation: was taking in finding neighbours procedure the default vdw element radius rather thatn the one set in setRadius: NOTE this changes slightly the area values we are getting.
Fixed issue in parsing of atoms when no atom type can be guessed: now whenever we can't guess we write a warning, also setRadius will use default radius if element not known (instead of null pointing)