Flutters, known in this game as Wiggler Flies, are only seen in "GO! GO! MARIO!!". Just before the goal, a swarm of them appear over a flat turf, they fly up and down and charge towards Yoshi if an egg is thrown at them or jumped on. They are defeated if hit by Yoshi's tongue or a Ground Pound.

A Wiggler Fly, under the name Flying Wiggler, appears in Tetris Attack, which depicts it as a friend of Yoshi rather than an enemy. Flying Wiggler is playable in Time Trial mode, and can be fought and rescued on the Flower Stage in the main Vs. Com mode. In the SNES version, it is paired with the similarly-themed Eggo-Dil.

An individual Flutter also appears in Mario Party Advance, where she resides on the third floor of the Mushroom Condo. Two of the game's quests directly involve her. In one (Hearts A-Flutter), Flutter tells the player that she has a crush on Mr. I, and the player has to tell him that she loves him, as she is too shy. However, after learning that he said no, she still gives the player a Gaddget, Love Me Not. The other involves the lovestruck Petal Guy getting the player to deliver her a love poem (Blossom of My Heart), but, upon arriving at the condo, Petal Guy arrives and confesses his love to Flutter, but she doesn't understand what he is saying and leaves. The ending says that Flutter continues to search for a boyfriend.

Flutters were originally going to appear in World-e of Super Mario Advance 4: Super Mario Bros. 3, but were left unused likely due to the discontinuation of the e-Reader. They were to have the same behavior to that in Super Mario World 2: Yoshi's Island.