... Hello,
I´am trying to use a specific component in Anduril (http://csbi.ltdk.helsinki.fi/pub/anduril/microarray/doc/index.html?q=CN2GECollection).
I have used just R language, now I am really lost with Anduril. It is of course a very basic question, but how can I run this components??? To me this ...

... I would like to select specific rows in a dataframe when I get a value in some row. These selected lines (plus initial selected line) must compose a new dataframe and the dataframe name must be = $Name in initial selected line.
The logic:
1 - The initial selected lines must have $FC=> 0.7.
2 - ...

... I would like analyze 17 probes separately, and each of them can be in a different chromosome. Then I have two levels: probes and chr:
probes <- c("BovineHD0500029561","BovineHD1100020616","BTB-00266062","BovineHD0200040828","BovineHD0100013622","BovineHD0100009413","BovineHD0300027356","Bovi ...

... You are right! Now it works, but.... I put 4 more lines:
data <- fData(eset)
outfile <- paste0("chr",k,"FCadjusted.txt")
setwd("/home/proj/MT_Nellore/R/eBrowser/Adjusted/FC")
write.table(data, outfile, quote = FALSE, col.names = FALSE)}}
And now the problem is that just files 1 to 8 were ...

... I would like to create a loop to load this files through `read.eset`of bioconductor. I have one file per chromosome (29) files.
I tried that:
{for(k in 1:29){
expr <- paste0("/home/proj/MT_Nellore/R/eBrowser/Adjusted/LRRadjustedextremes0.5kgchr",k,".txt")
pdat <- paste0("/home ...

... I would like to limit the number of decimals of SNP array signal when a data frame is imported. My .txt input have 16 decimals to each row in collumn "Value". In a same collumns it can have numbers and strings (Non called intensities = NC), at same time. My dataframe look like that:
Value
...