Anopheles gambiae vs Anopheles farauti LastZ Results

Anopheles gambiae (Anopheles gambiae, AgamP4) and Anopheles farauti (Anopheles farauti, AfarF2) were aligned using the LastZ alignment algorithm (LastZ)
in VectorBase release 1506. Anopheles gambiae was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 189,452

Genome coverage (bp)

Coding exon coverage (bp)

Anopheles gambiae

Uncovered: 170,800,136 out of 273,109,044Covered: 102,308,908 out of 273,109,044

Uncovered: 676,310 out of 20,801,863Matches: 15,789,352 out of 20,801,863Mismatches: 3,858,497 out of 20,801,863Insertions: 477,704 out of 20,801,863

Anopheles farauti

Uncovered: 90,735,154 out of 183,103,254Covered: 92,368,100 out of 183,103,254

Uncovered: 625,795 out of 20,229,039Matches: 15,405,667 out of 20,229,039Mismatches: 3,767,823 out of 20,229,039Insertions: 429,754 out of 20,229,039