I have figured out how to send data from my local Galaxy to my local
GBrowse. Thanks for the help!

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Now I would also like to go in the other direction and send data from
GBrowse to Galaxy.
galaxy incoming = http://localhost/cgi-bin/gbrowse
When I export data to Galaxy I get the main page of galaxy but do not see
any data.
The url in my browser is
http://localhost:8080/?URL=http://localhost/cgi-bin/gbrowse
Any ideas as to why I can't see the actual data? Shoudn't the url contain
ref;start;end;type?
Thanks for your help,
Liisa
From:
Nicki Gray <nicki.g...@imm.ox.ac.uk>
To:
Liisa Koski <liisa.ko...@dnalandmarks.ca>
Cc:
"galaxy-dev@lists.bx.psu.edu" <galaxy-dev@lists.bx.psu.edu>
Date:
2011-02-10 11:40
Subject:
Re: [galaxy-dev] Send data to GBrowse
Hi Liisa
When setting this up on our own local instance to get bigwig files to
display in Gbrowse we edited:
1. universe_wsgi.ini
2. tool-data/shared/gbrowse/gbrowse_build_sites.txt
3. datatypes_conf.xml
so that it includes
<display file="gbrowse/gbrowse_wig.xml" />
4. and in display_applications/gbrowse/ make sure you have the relevant
xml files
eg gbrowse_wig.xml, gbrowse_bigwig.xml
Nicki Gray
MRC Molecular Haematology Unit
On 7 Feb 2011, at 19:03, Liisa Koski wrote:
Hi,
I have just installed Galaxy and am trying to configure it to allow
display of data on my local installation of GBrowse.
I have edited tool-data/shared/gbrowse/gbrowse_build_sites.txt (species
http://domain.ca/cgi-bin/gbrowse/species species)
As well as universe_wsgi.ini (gbrowse_display_sites = species)
However I do not see a link in history items after I stop and start the
server.
Is there something else I'm missing?
Thanks in advance for your help,
Liisa<ATT00001.txt>

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