Fusion

STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:query proteins and first shell of interactors

white nodes:second shell of interactors

Node Content

empty nodes:proteins of unknown 3D structure

filled nodes:some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

glr0498

DNA-damage-inducible protein (440 aa)

Predicted Functional Partners:

glr0497

Hypothetical protein (393 aa)

0.871

gll3611

Phosphate starvation-inducible protein PhoH-like protein (323 aa)

0.638

gll0496

Hypothetical protein (290 aa)

0.602

gll1172

Hypothetical protein (241 aa)

0.438

infB

Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (925 aa)

0.404

rbfA

Ribosome binding facror A; Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5’-terminal helix region of 16S rRNA (129 aa)

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1

node2

node1 accession

node2 accession

node1 annotation

node2 annotation

score

gll0496

glr0497

gll0496

glr0497

Hypothetical protein

Hypothetical protein

0.602

gll0496

glr0498

gll0496

glr0498

Hypothetical protein

DNA-damage-inducible protein

0.602

gll1172

glr0498

gll1172

glr0498

Hypothetical protein

DNA-damage-inducible protein

0.438

gll3611

glr0498

gll3611

glr0498

Phosphate starvation-inducible protein PhoH-like protein

DNA-damage-inducible protein

0.638

glr0497

gll0496

glr0497

gll0496

Hypothetical protein

Hypothetical protein

0.602

glr0497

glr0498

glr0497

glr0498

Hypothetical protein

DNA-damage-inducible protein

0.871

glr0498

gll0496

glr0498

gll0496

DNA-damage-inducible protein

Hypothetical protein

0.602

glr0498

gll1172

glr0498

gll1172

DNA-damage-inducible protein

Hypothetical protein

0.438

glr0498

gll3611

glr0498

gll3611

DNA-damage-inducible protein

Phosphate starvation-inducible protein PhoH-like protein

0.638

glr0498

glr0497

glr0498

glr0497

DNA-damage-inducible protein

Hypothetical protein

0.871

glr0498

glr0820

glr0498

glr0820

DNA-damage-inducible protein

Hypothetical protein

0.404

glr0498

infB

glr0498

gvip372

DNA-damage-inducible protein

Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex

0.404

glr0498

rbfA

glr0498

glr4032

DNA-damage-inducible protein

Ribosome binding facror A; Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5’-terminal helix region of 16S rRNA

0.404

glr0820

glr0498

glr0820

glr0498

Hypothetical protein

DNA-damage-inducible protein

0.404

glr0820

infB

glr0820

gvip372

Hypothetical protein

Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex

0.404

glr0820

rbfA

glr0820

glr4032

Hypothetical protein

Ribosome binding facror A; Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5’-terminal helix region of 16S rRNA

0.404

infB

glr0498

gvip372

glr0498

Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex

DNA-damage-inducible protein

0.404

infB

glr0820

gvip372

glr0820

Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex

Hypothetical protein

0.404

infB

rbfA

gvip372

glr4032

Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex

Ribosome binding facror A; Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5’-terminal helix region of 16S rRNA

0.753

rbfA

glr0498

glr4032

glr0498

Ribosome binding facror A; Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5’-terminal helix region of 16S rRNA

DNA-damage-inducible protein

0.404

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Network Stats

Network Stats analysis is still ongoing, please wait ...

Functional enrichments in your networkNote: some enrichments may be expected here (why?)

Enrichment analysis is still ongoing, please wait ...

Statistical background

For the above enrichment analysis, the following statistical background is assumed: