Laitinen, Jarmo, Rehell, Sakari and Oksanen, Jari. Community and species responses to water level fluctuations with reference to soil layers in different habitats of mid-boreal mire complexes. Plant Ecology. 2008; 194(1):17-36.

Nagaoka T, Hirata K. Reconstruction of paleodemographic characteristics from skeletal age at death distributions: Perspectives from Hitotsubashi, Japan. American Journal of Physical Anthropology 2007; 134: 301-311. (MLE with R 1.1.1 and the R function written by Frankenberg and Konigsberg 2006)

Toedling, J., Rhein, P., Ratei, R. et al. (2006) Automated in-silico detection of cell populations in flow cytometry readouts and its application to leukemia disease monitoring. BMC Bioinformatics. 7(282). http://www.biomedcentral.com/content/pdf/1471-2105-7-282. Note: "All computational methods were implemented in the statistical programming language R. Analyses were conducted using custom functions, which depend on released R packages. We used the SVM implementation of thepackage e1071. Our custom functions have been assembled into a new R-package, called cytomics, which is available from the authors upon request".

Elvidge, G.P., Price, T.S., Glenny, L. et al. (2005) Development and evaluation of real competitive PCR for high-throughput quantitative applications. Analytical Biochemistry. 339:231-41. Note: "To aid the analysis, we have created a public licence software package called TITAN (www.well.ox.ac.uk/~tprice/titan) that runs in the R statistical environment and on a variety of operating systems."

Fukuyama S, Inaoka T, Matsumura Y, Yamauchi T, Natsuhara K, Kimura R and Ohtsuka R (2005) Anthropometry of 5-19 year old Tongan children with special interest in the high prevalence of obesity among adolescent girls. Annals of Human Biology, 32(6):714-723.

Hickey, E., Abruzzo, G., Bowman, J. et al.(2005) Caspofungin versus amphotericin B treatment of Aspergillus fumigatus in kidneys of chronically immunosuppressed infected mice. Therapy. 2(4): 615-21. The R environment was used for all calculations and the production of graphs. Note: "The built-in Trellis-style library (lattice/grid), the boot library, and the Modern Applied Statistics with S (MASS) library provided function commands in addition to the standard R system calls."

Cummings, Michael P. and Segal, Mark R.(2004) Few amino acid positions in rpoB are associated with most of the rifampin resistance in Mycobacterium tuberculosis. BMC Bioinformatics. 5(137) http://www.biomedcentral.com/1471-2105/5/137. Note: Analyses were done with rpart (recursive partitioning) using the rpart library.