Articles tagged with: e-notebook

DUE TO SEVERE COMMENT SPAM ON THIS POST I HAVE CLOSED IT TO COMMENTS
On February 28/29 we held a workshop on our Blog Based notebook system at the Cosener’s House in Abingdon, Oxfordshire. This was a small workshop with 13 people including biochemists (from Southampton, Cardiff, and RAL), social scientists (from Oxford Internet Institute and Computing Laboratory), developers from the MyGrid and MyExperiment family and members of the the Blog development team. The purpose of the workshop was to try and identify both the key problems that need to be …

I have got very behind. I’ve only just realised just how far behind but my excuse is that I have been rather busy. How far behind I was was brought home by the fact that I hadn’t actually commented as yet that the proposal for an Open Science session at PSB that was driven primarily by Shirley Wu has gone in and the proposal is now up at Nature Precedings. The posting there has already generated some new contacts.
On Tuesday I gave a talk at UKOLN at the University of …

On Wednesday and Thursday this week I was lucky to be able to attend a conference on Electronic Laboratory Notebooks run by an organization called SMI. Lucky because the registration fee was £1500 and I got a free ticket. Clearly this was not a conference aimed at academics. This was a discussion of the capabilities and implications for Electronic Laboratory Notebooks used in industry, and primarily in big pharma.
For me it was very interesting to see these commercial packages. I am often asked how what we do compares to these …

There were lots of helpful comments on my previous post as well as some commiseration from Peter Murray-Rust. Also Jean-Claude Bradley’s group is starting to face some similar issues with the combi-Ugi project ramping up. All in the week that the Science Commons Open Data protocol is launched. I just wanted to bring out a few quick points:
The ease with which new data types can be incorporated into UsefulChem, such as the recent incorporation of a crystal structure (see also JC’s Blog Post), shows the flexibility and ease provided by …

Our laboratory blog system has been doing a reasonable job of handling protocols and simple pieces of analysis thus far. While more automation in the posting would be a big benefit, this is more a mechanical issue than a fundamental problem. To re-cap our system is that every “item” has its own post. Until now these items have been samples, or materials. The items are linked by posts that describe procedures. This system provides a crude kind of triple; Sample X was generated using Procedure A from Material Z. …

In a recent post I extolled the possible virtues of Open Notebook Science in avoiding or ameliorating the risk of being scooped. I also made a virtue of the fact that being open encourages you to take a more open approach; that there is a virtuous circle or positive feedback. However much of this is very theoretical. We don’t have good case studies to point at that show that Open Notebook Science generates positive outcomes in practice. To take a more cynical perspective where is the evidence that I am …

This morning I got to sit down with Bill Flanagan, Barry Canton, Austin Che, and Jason Kelly and throw some ideas around about electronic notebooks. This is an approximate summary of some of the points that came out of this. This may be a bit of brain dump so I might re-edit later.

Neither Wikis nor Blogs provide all the functionality required. Wikis are good at providing a framework that within which to organise information where as blogs are good at logging information and providing it in a journal …

Given that most people reading this probably also read the UsefulChem Blog I would guess that they have already figured out I am visiting the States. However as I am now here and due to jet lag have a few hours to kill before breakfast I thougt I might detail the intinerary for anyone interested.

I am in the process of preparing the talk I am giving at Drexel next month and have been going over the early versions of our Lab Blog and getting a clearer picture of how our usage has evolved. I wanted to record this so will write some notes as I go.

Peter Murray-Rust is going to take an Open Notebook Science approach to a project on checking whether NMR spectra match up with the molecules they are asserted to represent. The question he poses is how best to organise this. The form of an open notebook seems to be a theme at the moment with both discussions between myself and Jean-Claude Bradley (see also the ONS session at SFLO and associated comments) as well as an initiative on OpenWetWare to develop their Wiki notebook platform with more features. There are many …