Compounds in the medium listed by their compound names. Gram & Mol amounts are per Liter of medium. Trace metabolites & gases usually do not have amounts

Name

Semi unique name

Unique Name

Gram Amount

Mol Amount

KH2PO4

Potassium dihydrogen phosphate

SEED-cpd00009#cpd00205##

0.49

0.00

CoCl2 x 6 H2O

CoCl2

SEED-cpd00099#cpd00149##

1.87E-4

7.88E-7

HCl

HCl

SEED-cpd00099###

6.65E-4

1.90E-5

CaCl2 x 2 H2O

Calcium chloride

SEED-cpd00063#cpd00099##

0.05

0.00

Na2S x 9 H2O

Sodium sulfide hydrate

SEED-cpd00239#cpd00971##

0.49

0.00

ZnCl2

ZnCl2

SEED-cpd00034#cpd00099##

6.91E-5

5.12E-7

2-Methylbutyric acid

2-methylbutyric acid

2-methylbutyric acid#

0.49

0.00

CO2

CO2

SEED-cpd00011###

null

null

NH4Cl

Ammonium chloride

SEED-cpd00013#cpd00099##

0.40

0.01

CuCl2 x 2 H2O

CuCl2

SEED-cpd00058#cpd00099##

1.97E-6

1.17E-8

Na2MoO4 x 2 H2O

Na2MoO4

SEED-cpd00971#cpd11145##

3.55E-5

1.47E-7

H3BO3

Boric acid

SEED-cpd09225###

5.92E-6

9.55E-8

Isovaleric acid

Isovaleric acid

SEED-cpd05178###

0.49

0.00

NiCl2 x 6 H2O

NiCl2

SEED-cpd00099#cpd00244##

2.37E-5

9.95E-8

Isobutyric acid

isobutyric acid

SEED-cpd01711###

0.49

0.01

MgSO4 x 7 H2O

Magnesium sulfate

SEED-cpd00048#cpd00254##

0.40

0.00

H2O

H2O

SEED-cpd00001###

null

null

Cysteine-HCl x H2O

Cysteine-HCl

SEED-cpd00084#cpd00099##

0.49

0.00

Resazurin

Resazurin

SEED-cpd08053###

9.89E-4

4.32E-6

Na-formate

Na-formate

SEED-cpd00047#cpd00971##

1.98

0.03

NaHCO3

sodium bicarbonate

SEED-cpd00242#cpd00971#cpd09249#

3.96

0.05

Yeast extract

Yeast extract

rich-peptone#

1.19

null

MnCl2 x 4 H2O

MnCl2

SEED-cpd00030#cpd00099##

9.87E-5

4.99E-7

Valeric acid

Valeric acid

SEED-cpd00597###

0.49

0.00

Na-acetate

Na-acetate

SEED-cpd00029#cpd00971##

0.99

0.01

FeSO4 x 7 H2O

Iron sulfate

SEED-cpd00048#cpd10515##

1.98E-3

7.09E-6

H2

H2

SEED-cpd11640###

null

null

Distilled water

H2O

SEED-cpd00001###

null

null

FeCl2 x 4 H2O

Iron chloride

SEED-cpd00099#cpd10516##

1.48E-3

7.45E-6

NaCl

NaCl

SEED-cpd00099#cpd00971##

0.40

0.01

NaOH

Sodium hydroxide

SEED-cpd09244###

null

null

sludge from an anaerobic digester

Sludge fluid

rich-rumen#

49.46

0.05

Seed Metabolites list

All SEED compounds in the medium, listed with molar concentrations (mol/L). Some SEED compounds appear in multiple
compound names in the 'metabolite list' -- here, they are combined for final molar concentrations.

Seed ID

Name

Mol Concentration

cpd00058

Cu2+

1.1655676914997813E-8

cpd00244

Ni2+

9.95362472488842E-8

cpd00242

H2CO3

0.04710093730865244

cpd01711

Isobutyrate

0.005684595882078742

cpd00030

Mn2+

4.993183455741725E-7

cpd09249

Sodium bicarbonate

0.0

cpd00034

Zn2+

5.115978782208855E-7

cpd00011

CO2

0.0

cpd09244

Sodium hydroxide

0.0

cpd00013

NH3

0.007465054214956236

cpd09225

Boric acid

9.548255330850626E-8

cpd00029

Acetate

0.01206243516441099

cpd00009

Phosphate

0.0036634062351174118

cpd00239

H2S

0.002032298507256423

cpd08053

Resazurin

4.319299927867691E-6

cpd00149

Co2+

7.879952907203335E-7

cpd00971

Na+

0.09914153312880543

cpd11145

Sodium molybdate

1.4659310701925027E-7

cpd00063

Ca2+

3.3804500460755336E-4

cpd10515

Fe2+

7.0891932161383355E-6

cpd10516

fe3

7.452062317632666E-6

cpd00048

Sulfate

0.00160857825774834

cpd11640

H2

0.0

cpd00084

L-Cysteine

0.0028398497946646602

cpd00047

Formate

0.029091755396520622

cpd05178

Isovaleric acid

0.004896632096444065

cpd00001

H2O

0.9505415491932878

cpd00099

Cl-

0.017840226480072066

cpd00205

K+

0.0036634062351174118

cpd00254

Mg

0.0016014890645322018

cpd00597

Valerate

0.004896632096444065

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