Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )

Length:

51

Sequences:

442

Seq/Len:

8.67

HH_delta:

0.825 (20Jul13)

GREMLIN Results:
Residue pairs sorted by strength in covariance:Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

i

j

Raw Score

Scaled Score

9_G

35_G

0.50365

2.817

30_N

34_V

0.3442

1.925

6_L

43_L

0.32404

1.813

17_W

45_F

0.30842

1.725

13_I

32_V

0.30775

1.722

5_N

42_A

0.2695

1.508

3_W

45_F

0.24306

1.360

2_E

31_N

0.23777

1.330

10_L

16_P

0.23154

1.295

28_A

32_V

0.22519

1.260

16_P

21_F

0.22331

1.249

19_L

28_A

0.21757

1.217

25_A

34_V

0.21515

1.204

17_W

21_F

0.20855

1.167

2_E

21_F

0.20581

1.151

38_V

42_A

0.20394

1.141

9_G

39_A

0.20066

1.122

14_V

18_V

0.2

1.119

6_L

39_A

0.19584

1.096

6_L

42_A

0.19442

1.088

4_L

37_L

0.19048

1.066

7_L

20_G

0.18222

1.019

39_A

43_L

0.17907

1.002

3_W

44_W

0.17638

0.987

3_W

37_L

0.17196

0.962

8_L

23_A

0.17004

0.951

17_W

31_N

0.16625

0.930

26_A

30_N

0.16274

0.910

22_S

36_I

0.15958

0.893

24_T

43_L

0.15525

0.868

10_L

15_S

0.15475

0.866

13_I

35_G

0.15468

0.865

26_A

29_W

0.15426

0.863

29_W

33_I

0.15411

0.862

27_A

39_A

0.1541

0.862

5_N

38_V

0.15364

0.859

13_I

36_I

0.15289

0.855

10_L

26_A

0.15168

0.848

2_E

14_V

0.15095

0.844

26_A

37_L

0.15027

0.841

8_L

34_V

0.14961

0.837

14_V

26_A

0.14936

0.836

13_I

37_L

0.14799

0.828

33_I

40_L

0.1469

0.822

11_W

32_V

0.1459

0.816

7_L

37_L

0.14308

0.800

8_L

42_A

0.14306

0.800

7_L

29_W

0.1404

0.785

3_W

18_V

0.13927

0.779

17_W

41_L

0.1363

0.762

18_V

27_A

0.13587

0.760

22_S

26_A

0.13417

0.751

29_W

32_V

0.13242

0.741

20_G

25_A

0.13122

0.734

4_L

40_L

0.12905

0.722

15_S

18_V

0.12869

0.720

24_T

40_L

0.12846

0.719

15_S

38_V

0.12786

0.715

8_L

33_I

0.12779

0.715

8_L

41_L

0.12669

0.709

13_I

29_W

0.12548

0.702

4_L

36_I

0.12542

0.702

15_S

20_G

0.12518

0.700

12_L

42_A

0.12462

0.697

20_G

42_A

0.12428

0.695

14_V

19_L

0.12376

0.692

Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.