Commercial Sequence Alignment--for Windows?

Dylan Bulseco (bulsecod at ucs.orst.edu) wrote:
: Any suggestions for a good commercial DNA Sequence analysis software package
: for windows...MUST include some type of sequence alignment protocol (and
: handle more than 2 sequences), import databases (both sequences and
: restriction enzymes), conduct restriction digests, and manage sequencing
: projects.
: If you have any suggestions for commercial packages that you have tried and
: can recommend (or possibly warn me to stay away from!) please let me know!
I use MACAW for protein alignments and it works great because it looks
for structurally conserved regions and alignments. It also aligns DNA
sequences, but I've never used it for this.
Reno