Where's AUTORUN.INF, dvd-rom.exe, and go.exe after an iso shrink using DVD Shrink 3.2

Where's AUTORUN.INF, dvd-rom.exe, and go.exe after an iso shrink using DVD Shrink 3.2. They are in the pre-shrink. Will moving them from the pre-shrunk iso to the shrunk iso cure the startup problem and how can I move them?