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Dragon Ball GT: Transformation sports multiple modes of play, but the story mode is the only one available from the beginning. The other gameplay modes must be unlocked by the player by purchasing them with acquired zeni, which is rewarded to the player at the end of each stage, based on their performance. The player's total points are converted into zeni, and bonuses are rewarded based on multiple factors such as time, combos, and power-ups obtained.

This is the main mode of the game. The first level is Immecka, the first planet that Goku, Trunks, and Pan visit during their quest to find the elusive Black Star Dragon Balls. Throughout the course of the game, players collect the rest of the Dragon Balls and return to Earth, which has been completely taken over by the Tuffle parasite known as "Baby". The final stage takes place on New Planet Plant, the Tuffle home world, which was wished back to existence using the Black Star Dragon Balls by Baby Vegeta. In the final boss battle, Super Saiyan 4 Goku faces off against a Golden Great Ape Baby Vegeta.

Similar to Story Mode, only with the between-stage discussion scenes removed. However, the benefit of this mode is that the player is able to choose from up to three of the nine available characters that they have unlocked to create their own team. Despite the fact that Goku (with tail) and Golden Great Ape Goku are playable briefly during the story mode, they are not available in any other mode.

Similar to the previous endurance modes, this single player or multiplayer mode has the player(s) choose a time limit of their choice, and try to defeat as many miniature robots as they can within the chosen limit.

Dragon Ball GT: Transformation received average reviews, like an average 68% on Game Ratings. A sequel was appearantly planned, as the game left off at the joining of Dr. Gero and Dr. Myuu in Hell, but it was not released due to its very minimal success, and as such the 2006 announced game Dragon Ball GT: Transformation 2 was never made by either Webfoot or Atari.