OPTIONS

--imethod<str>
Method to use for interpolation during reconstruction. ["NN" (nearest neighbour),
"lwNN" (linear weighted nearest neighbor), "swNN" (square weighted nearest
neighbor), "MS" (Modified Shepard´s method)"CS" (Cubic spline)] (str; default:
´CS´). The full name of this option for the EsoRex configuration file is
kmos.kmos_sci_red.imethod [default = CS].
--smethod<str>
Method to use for interpolation during shifting. ["NN" (nearest neighbour), "CS"
(Cubic spline)] (str; default: ´CS´). The full name of this option for the EsoRex
configuration file is kmos.kmos_sci_red.smethod [default = CS].
--method<str>
The shifting method: ´none´: no shifting, combined directly, ´header´: shift
according to WCS (default), ´center´: centering algorithm, ´user´: read shifts from
file (str; default: ´header´). The full name of this option for the EsoRex
configuration file is kmos.kmos_sci_red.method [default = header].
--fmethod<str>
The fitting method (applies only when method=´center´): ´gauss´: fit a gauss
function to collapsed image (default), ´moffat´: fit a moffat function to collapsed
image (str; default: ´gauss´). The full name of this option for the EsoRex
configuration file is kmos.kmos_sci_red.fmethod [default = gauss].
--name<str>
Name of the object to combine. (str; default: ´´). The full name of this option for
the EsoRex configuration file is kmos.kmos_sci_red.name [default = ].
--ifus<str>
The indices of the IFUs to combine. "ifu1;ifu2;..." (str; default: ´´). The full
name of this option for the EsoRex configuration file is kmos.kmos_sci_red.ifus
[default = ].
--oscan<bool>
Apply Overscan Correction (bool; default: True). The full name of this option for
the EsoRex configuration file is kmos.kmos_sci_red.oscan [default = True].
--pix_scale<float>
Change the pixel scale [arcsec]. Default of 0.2" results into cubes of 14x14pix, a
scale of 0.1" results into cubes of 28x28pix, etc. (float; default: 0.2). The full
name of this option for the EsoRex configuration file is
kmos.kmos_sci_red.pix_scale [default = 0.2].
--suppress_extension<bool>
Suppress arbitrary filename extension.(TRUE (apply) or FALSE (don´t apply) (bool;
default: False). The full name of this option for the EsoRex configuration file is
kmos.kmos_sci_red.suppress_extension [default = False].
--neighborhoodRange<float>
Defines the range to search for neighbors in pixels (float; default: 1.001). The
full name of this option for the EsoRex configuration file is
kmos.kmos_sci_red.neighborhoodRange [default = 1.001].
--filename<str>
The path to the file with the shift vectors.(Applies only to method=´user´) (str;
default: ´´). The full name of this option for the EsoRex configuration file is
kmos.kmos_sci_red.filename [default = ].
--flux<bool>
TRUE: Apply flux conservation. FALSE: otherwise (bool; default: False). The full
name of this option for the EsoRex configuration file is kmos.kmos_sci_red.flux
[default = False].
--background<bool>
TRUE: Apply background removal. FALSE: otherwise (bool; default: False). The full
name of this option for the EsoRex configuration file is
kmos.kmos_sci_red.background [default = False].
--fast_mode<bool>
FALSE: cubes are shifted and combined,TRUE: cubes are collapsed and then shifted
and combined (bool; default: False). The full name of this option for the EsoRex
configuration file is kmos.kmos_sci_red.fast_mode [default = False].
--extrapolate<bool>
Applies only to ´smethod=CS´ when doing sub-pixel shifts: FALSE: shifted IFU will
be filled with NaN´s at the borders,TRUE: shifted IFU will be extrapolated at the
borders (bool; default: False). The full name of this option for the EsoRex
configuration file is kmos.kmos_sci_red.extrapolate [default = False].
--xcal_interpolation<bool>
TRUE: Interpolate xcal between rotator angles. FALSE: otherwise (bool; default:
True). The full name of this option for the EsoRex configuration file is
kmos.kmos_sci_red.xcal_interpolation [default = True].
--edge_nan<bool>
Set borders of cubes to NaN before combining them.(TRUE (apply) or FALSE (don´t
apply) (bool; default: False). The full name of this option for the EsoRex
configuration file is kmos.kmos_sci_red.edge_nan [default = False].
--no_combine<bool>
Don´t combine cubes after reconstruction.(TRUE (apply) or FALSE (don´t apply)
(bool; default: False). The full name of this option for the EsoRex configuration
file is kmos.kmos_sci_red.no_combine [default = False].
--no_subtract<bool>
Don´t sky subtract object and references.(TRUE (apply) or FALSE (don´t apply)
(bool; default: False). The full name of this option for the EsoRex configuration
file is kmos.kmos_sci_red.no_subtract [default = False].
--sky_tweak<bool>
Use modified sky cube for sky subtraction.(TRUE (apply) or FALSE (don´t apply)
(bool; default: False). The full name of this option for the EsoRex configuration
file is kmos.kmos_sci_red.sky_tweak [default = False].
--discard_subband<bool>
Ignore last sub-band in the sky tweaking (bool; default: False). The full name of
this option for the EsoRex configuration file is kmos.kmos_sci_red.discard_subband
[default = False].
--tbsub<bool>
Subtract thermal background from input cube.(TRUE (apply) or FALSE (don´t apply)
(bool; default: True). The full name of this option for the EsoRex configuration
file is kmos.kmos_sci_red.tbsub [default = True].
--b_samples<long>
The number of samples in wavelength for the reconstructed cube (long; default:
2048). The full name of this option for the EsoRex configuration file is
kmos.kmos_sci_red.b_samples [default = 2048].
--b_start<float>
The lowest wavelength [um] to use when reconstructing. Derived by default,
depending on the band (float; default: -1.0). The full name of this option for the
EsoRex configuration file is kmos.kmos_sci_red.b_start [default = -1.0].
--b_end<float>
The highest wavelength [um] to use when reconstructing. Derived by default,
depending on the band (float; default: -1.0). The full name of this option for the
EsoRex configuration file is kmos.kmos_sci_red.b_end [default = -1.0].
--obj_sky_table<str>
The path to the file with the modified obj/sky associations. (str; default: ´´).
The full name of this option for the EsoRex configuration file is
kmos.kmos_sci_red.obj_sky_table [default = ].
--velocity_offset<float>
Specify velocity offset correction in km/s for lambda scale (float; default: 0.0).
The full name of this option for the EsoRex configuration file is
kmos.kmos_sci_red.velocity_offset [default = 0.0].
--save_interims<bool>
Save interim object and sky cubes. Can only be used together with --sky_tweak
(bool; default: False). The full name of this option for the EsoRex configuration
file is kmos.kmos_sci_red.save_interims [default = False].
--collapse_reconstructed<bool>
Flag to collapse the reconstructed images (bool; default: False). The full name of
this option for the EsoRex configuration file is
kmos.kmos_sci_red.collapse_reconstructed [default = False].
--collapse_combined<bool>
Flag to collapse the combined images (bool; default: False). The full name of this
option for the EsoRex configuration file is kmos.kmos_sci_red.collapse_combined
[default = False].
--cmethod<str>
Apply "average", "median", "sum", "min_max." or "ksigma". (str; default: ´ksigma´).
The full name of this option for the EsoRex configuration file is
kmos.kmos_sci_red.cmethod [default = ksigma].
--cpos_rej<float>
The positive rejection threshold for kappa-sigma-clipping (sigma). (float;
default: 3.0). The full name of this option for the EsoRex configuration file is
kmos.kmos_sci_red.cpos_rej [default = 3.0].
--cneg_rej<float>
The negative rejection threshold for kappa-sigma-clipping (sigma). (float;
default: 3.0). The full name of this option for the EsoRex configuration file is
kmos.kmos_sci_red.cneg_rej [default = 3.0].
--citer<long>
The number of iterations for kappa-sigma-clipping. (long; default: 3). The full
name of this option for the EsoRex configuration file is kmos.kmos_sci_red.citer
[default = 3].
--cmax<long>
The number of maximum pixel values to clip with min/max-clipping. (long; default:
1). The full name of this option for the EsoRex configuration file is
kmos.kmos_sci_red.cmax [default = 1].
--cmin<long>
The number of minimum pixel values to clip with min/max-clipping. (long; default:
1). The full name of this option for the EsoRex configuration file is
kmos.kmos_sci_red.cmin [default = 1].
Note that it is possible to create a configuration file containing these options, along
with suitable default values. Please refer to the details provided by the 'esorex --help'
command.

AUTHOR

BUGREPORTS

LICENSE

This file is part of the CRIRES Instrument Pipeline Copyright (C) 2002,2003 European
Southern Observatory
This program is free software; you can redistribute it and/or modify it under the terms of
the GNU General Public License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program;
if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
MA 02111-1307 USA