X-ray study reveals long-sought insights into potential drug target

Results suggest new directions for research on medications for heart conditions, pain relief and tissue growth

New high brilliant X-ray sources such free-electron lasers (XFEL) provide innovative new opportunities in the field of structure determination of membrane bound proteins.

Date:

April 5, 2017

Source:

Arizona State University

Summary:

Researchers hope to design a new generation of drugs against an array of deadly diseases. One of the key challenges is understanding a particular class of proteins adorning cell surfaces, which are the targets of the majority of pharmaceutical drugs. Scientists have now examined one promising drug target in luminous detail, using a device known as an X-ray free electron laser, or XFEL.

Image: Researchers use powerful X-rays to reveal molecular structures at the site where drug compounds interact with cell receptors. These structures help point the way to designing medicines of the future. (Greg Stewart/SLAC National Accelerator Laboratory)

Researchers hope to design a new generation of drugs against an array of deadly diseases. The task, however, is costly, arduous and often ineffective. One of the key challenges is understanding a particular class of proteins adorning cell surfaces, which are the targets of the majority of pharmaceutical drugs.

Now Wei Liu and his colleagues at ASU's Biodesign Institute, along with a team led by Haitao Zhang and Vadim Cherezov of USC have examined one promising drug target in luminous detail, using a device known as an X-ray free electron laser, or XFEL.

Their results, which appear in the advanced online edition of the journal Nature, shed new light on AT2R, a critical cell receptor, whose range of functions researchers have only begun to tease out. The group's findings could speed the development of new compounds addressing cardiovascular conditions, neuropathic pain and tissue growth.

AT2R belongs to a family of cell receptors known as GPCRs (for G-protein coupled receptor), the largest family of cell membrane receptors in the human genome. As Liu explains, GPCRs are such attractive candidates for targeting by new drugs because they provide essential lines of communication between a cell's external environment and its interior workings.

"Humans have over 800 GPCRs," Liu says "and every single one of them is important, because they recognize thousands of different entities from outside the cell, including small molecules, peptides, proteins and even photons." The light-sensitive GPCR rhodopsin, for example, is critical for vision, olfactory receptors account for the sense of smell, while the caffeine in coffee acts by binding with adenosine receptors, and so forth.

In addition to their vital housekeeping roles, GPCRs provide drug targets for the treatment of a myriad of human illnesses. "For almost any disease we are struggling with, GPCR proteins could be the potential drug targets: chemokine receptors for HIV, serotonin receptors for Alzheimer's, dopamine receptors for drug addiction and Parkinson's," Liu says.

Using powerful X-rays from SLAC's Linac Coherent Light Source (LCLS) and Argonne National Laboratory's Advanced Photon Source (APS), scientists discovered new structural details of the angiotensin II receptor AT2R that have puzzled researchers for two decades. AT2R is one of two angiotensin II receptors, and its pair, AT1R, has been successfully used as a target for high blood pressure medications.

Image: Although the two angiotensin II receptors are thought to be very similar, an X-ray study showed clear differences in the pockets where the receptors bind to drug-like compounds. This illustration shows details in the pocket structures of AT2 (left) and AT1 (right). (Greg Stewart/SLAC National Accelerator Laboratory)

The information revealed by the study could give drug developers a new path for compounds that combat pain and inflammation or promote tissue regeneration by docking snugly into a pocket in AT2R's elaborate 3-dimensional shape.

"Unlike its sibling AT1R, the AT2 receptor has not been fully understood," said Cherezov, professor of chemistry at the University of Southern California and principal investigator of the study. "Through this study we uncovered many important details about the AT2 receptor structure and how it binds to chemical compounds, information that will stimulate further studies of the receptor's function and could enable an exciting next step in drug discovery."

Two Receptors, Many Mysteries

Both angiotensin II receptors, AT1 and AT2, are key components of a hormone system that helps regulate blood pressure and sodium levels in the blood. They are known as "membrane proteins" because they straddle the plasma membranes of cells, where they receive signals from hormones outside the cell and pass them along to soluble partners inside the cell, such as G proteins or ?-arrestins, setting off a cascade of events that spread the signal cell-wide.

Many hypertension medications currently on the market target the AT1 receptor because of its well-understood role in blood pressure regulation; they block AT1 in order to reduce blood pressure. The AT2 receptor, on the other hand, is still an elusive drug target despite multiple studies of its function. Some, but not all, have shown it counteracts the effects of AT1; others point to its potential for tissue protection and regeneration; and still others suggest it could play a role in blocking pain.

While there are no approved drugs yet that act on AT2 receptors, pharmaceutical companies are aggressively pursuing compounds that will either activate or block them. One such compound, called EMA401, is being tested in patients for the treatment of neuropathic pain.

The latest study addresses two goals: understanding how AT2 differs from AT1, in order to selectively target it ; and exploring why AT2 -which has all the classic features of a GPCR, just like AT1 -- fails to activate G-proteins, which spread signals inside cells, or interact with arrestin, turning those signals off.

Biology Under X-Ray Light

In the experiments, the researchers looked at two different kinds of samples, which were formed into crystals for examination with X-rays. In one, the AT2 receptor was bound to a selective compound, one that binds only to AT2. These crystals were so small that they could only be studied at SLAC's X-ray free-electron laser LCLS, where they were streamed across a beam of ultrafast X-ray pulses.

In the other, a non-selective compound was bound to both AT1 and AT2. These samples, which formed larger crystals, were probed at Argonne's APS synchrotron light source.

Unexpected Outcomes

The results of the experiments were surprising in several ways. First, although both compounds were designed to block and deactivate the receptors, they left AT2 in a state that appeared to be active. In addition, although AT1 and AT2 were thought to be very similar, the pockets where the receptors bind to the compounds exhibited marked differences.

"This is something we have never seen with GPCRs," Cherezov said. "The idea was always that receptors that bind to the same compounds would have very similar pockets, so efforts to develop drugs that act on AT2 started with the same basic structures as drugs that act on AT1. Now we see that we may have to start with entirely different drug-like molecules that are tailored to fit the AT2 receptor, which could set the drug discovery process in a different direction."

The ASU participants assisted with data analysis as well as sample preparation and characterization. Liu, formerly a member of the team at USC, also helped with receptor construct design, purification and crystallization.

Liu stresses that many important GPCR proteins suitable for drug targets are only able to form very small crystals (under 100 microns in length) in the laboratory. Historically, the ability to grow large protein crystals in the laboratory were a prerequisite for studying their 3d structure at high resolutions, since smaller crystals would be destroyed by synchrotron radiation. Now however, the study of these molecules has been revolutionized through the use of XFEL technology, which exposes the micron-sized crystals to such short bursts of radiation that they remain intact.

ASU is a frontrunner in this new domain of study, combining their expertise in producing small crystals adequate for analysis of GPCR proteins with the capacity to image such samples at extremely high resolution using XFEL.

The Biodesign Institute has recently undertaken an audacious project to build a first-of-its-kind compact XFEL, capable of carrying out this type of high-resolution protein structural analysis, radically reducing cost and improving accessibility. (Currently, only 3 large XFEL machines are in existence, the SLAC facility at Stanford, DESY in Hamburg, Germany and the SACLA XFEL, in Harima, Japan.)

"XFEL opens the door to all of these membrane protein targets," Liu says, emphasizing that the field of X-ray crystallography is now poised for brisk advancement.