Oryza sativa Japonica Group vs Oryza glaberrima LastZ Results

Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Oryza glaberrima (Oryza glaberrima, Oryza_glaberrima_V1) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release 76. Oryza sativa Japonica Group was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 183,406

Genome coverage (bp)

Coding exon coverage (bp)

Oryza sativa Japonica Group

Uncovered: 104,102,970 out of 374,424,240Covered: 270,321,270 out of 374,424,240

Uncovered: 1,592,815 out of 34,124,807Matches: 31,069,594 out of 34,124,807Mismatches: 1,255,998 out of 34,124,807Insertions: 206,400 out of 34,124,807

Oryza glaberrima

Uncovered: 88,192,351 out of 316,419,574Covered: 228,227,223 out of 316,419,574

Uncovered: 4,000,029 out of 36,293,721Matches: 31,972,353 out of 36,293,721Mismatches: 268,429 out of 36,293,721Insertions: 52,910 out of 36,293,721