Bioinformatics Jobs - Stack Overflow Careershttp://careers.stackoverflow.com/jobsBioinformatics Jobs - Stack Overflow Careers16http://careers.stackoverflow.com/jobs/93233/software-engineer-embl-ebihttp://careers.stackoverflow.com/jobs/93233/software-engineer-embl-ebiEMBL-EBIbioinformaticsjavaspringlucenesolrSoftware Engineer at EMBL-EBI (Hinxton, UK)<p>We are seeking to&nbsp;recruit an experienced&nbsp;Software Engineer to join the UniProt protein resources team at the European Bioinformatics Institute (EMBL-EBI) located on the Wellcome Genome Campus near Cambridge in the UK.</p><br /><p>UniProt is one of the most internationally used protein databases serving a large and diverse research community in genomics, proteins and proteomics.&nbsp;UniProt is an international Consortium, a collaboration between the EBI, the Swiss Institute of Bioinformatics (SIB) and the Protein Information Resource (PIR).</p><br /><p>You will&nbsp;manage and develop software supporting the automatic annotation pipelines for complete genomes in UniProt.&nbsp;You will be responsible for the design, development and maintenance of software for the Java data services providing protein annotations to the scientific community and computational biologists.&nbsp;The role involves close interaction with the UniProt international consortium and team members.&nbsp;You are expected to be innovative and work with the team in the extension of the current software components as well as to evaluate and promote new software methods, tools and programming models for a robust and interoperable programming framework.</p><br /><p>The primary responsibilities include:</p><br /><ul><br /><li>Design, development and maintenance of software for the automatic annotation of large data sets</li><br /><li>Design, development and maintenance of software for the provision of data services, including the Java API for the scientific community</li><br /><li>Assist with programming standards to promote best practices</li><br /><li>Support the databases and develop and execute production release pipelines of the UniProt resources</li><br /><li>Assist with innovative programming technologies.</li><br /></ul><br /><p>The EBI is part of the European Molecular Biology Laboratory (EMBL) and it is a world-leading bioinformatics centre providing biological data to the scientific community with expertise in data storage, analysis and representation. EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academic and industry.</p>Fri, 17 Jul 2015 08:15:00 Z2015-07-17T08:15:00ZHinxton, UKhttp://careers.stackoverflow.com/jobs/92579/lead-software-engineer-for-the-nih-nci-genomic-the-university-of-chicagohttp://careers.stackoverflow.com/jobs/92579/lead-software-engineer-for-the-nih-nci-genomic-the-university-of-chicagoThe University of Chicago, Center for Data Intensive SciencecloudpythonbigdatabioinformaticshpcLead Software Engineer for the NIH/NCI Genomic Data Commons Project at The University of Chicago, Center for Data Intensive Science (Chicago, IL)<p>The&nbsp;Center for Data Intensive Science (CDIS) is looking for a Lead Software Engineer for the National Cancer Institute (NCI) <a href="http://sciencelife.uchospitals.edu/2014/12/02/transforming-cancer-research-the-genomic-data-commons/" rel="nofollow" rel="nofollow" rel="nofollow" rel="nofollow" rel="nofollow" rel="nofollow" rel="nofollow">Genomic Data Commons</a> (GDC) project. Alongside our team of experts, the Lead Software Engineer will develop the scalable and interoperable software stack for the GDC, supporting upwards of 5 petabytes of centralized and harmonized cancer genomic data.</p><br /><p>The GDC will provide a open source, scalable, modern informatics framework that uses community standards to make raw and processed genomic data broadly accessible. The GDC will harmonize and centralize existing petabyte-scale cancer genomics datasets through cutting edge approaches to data storage and analysis similar to what is used by successful companies. The GDC will eliminate a major chokepoint, streamlining access to data for researchers regardless of their institution's size or budget, effectively democratizing access to the material. It will also enable previously infeasible collaborative efforts between scientists. <br>The GDC serves as a key step toward the development of precision medicine, targeted treatments that are tailored to individual patients. Once fully developed, it will provide an interactive system for researchers and clinicians to upload genomics data and use it to identify the molecular subtype of cancer and potential therapeutic targets. Genetic data will be linked to extensive clinical information from patients and their response to treatment.</p><br /><p>The Lead Software Engineer in the Center for Data Intensive Science manages all aspects of programming projects, including requirements, design, implementation, deployment/delivery, and support. Leads team efforts and oversees the work of other software engineers. Provides technical oversight and develops standards, guidelines, and processes for applications. Reviews the design and code development of key architectural components. Contributes to decisions on project and infrastructure needs, including the evaluation of server technologies, languages, platforms, and frameworks. Develops timelines, technical diagrams, project plans, and resources allocation in an agile methodology. Works with cloud computing infrastructures including OpenStack, Amazon AWS and Google Cloud to design, develop, maintain, and evaluate software applications to meet business and technical requirements. Works in Linux-based systems primarily with Python and C/C++, with the ability to work with other programming languages as the need arises. Oversees code testing and ensures appropriate standards are met. Works with users, collaborators, and technical staff to resolve problems and respond to feedback regarding potential improvements and enhancements. Ensures appropriate documentation. Serves as a liaison with internal and external collaborators on multiple research projects.</p><br /><p>Research includes the full stack from systems to algorithms to user interfaces. Research projects span management, sharing, and provenance of large data sets; resource allocation and scheduling for cloud computing, large scale pipelining of next-generation sequence analysis, transfer programs/protocols for high-speed networks and resource visualization. <br>Perform other duties as assigned. <br><br><em>This position is grant supported and longevity of the position is dependent upon future funding. &nbsp;</em></p>Thu, 09 Jul 2015 14:15:00 Z2015-07-09T14:15:00ZChicago, ILhttp://careers.stackoverflow.com/jobs/92655/java-software-engineer-embl-ebihttp://careers.stackoverflow.com/jobs/92655/java-software-engineer-embl-ebiEMBL-EBIjavaspringjspjqueryhtmlJava Software Engineer at EMBL-EBI (Hinxton, UK)<p>We are seeking to recruit an experienced Software Engineer/Developer to work on the PhenoMeNal H2020 project, to create an e-infrastructure for large-scale computing with medical metabolomics data. You will join the Cheminformatics team at the European Bioinformatics Institute (EMBL-EBI) located at the Wellcome Genome Campus near Cambridge in the UK.<br><br>You will lead the further development, scaling and integration of existing bioinformatics solutions into a European e-infrastructure for analysing medical metabolomics data. This will lead into the development of virtual machine images (VMIs) to sustain various levels of data storage, pre-processing, integration, analysis, and visualisation. The use of VMIs will enable a flexible architecture that can run on local systems within participating and collaborating organisations, and maintain a high level of data security/integrity. Tools, services and associated software included in the different VMI&rsquo;s will be developed and integrated. The project will integrate well established stand-alone bioinformatics tools and a significant amount of research is necessary to investigate the requirements for interoperability of those tools in a coherent practically useful processing pipeline.</p><br /><p>The initial contract is for a period of 3 years with the possibility of a fixed-term extension.<br><br>The EBI is part of the European Molecular Biology Laboratory (EMBL) and it is a world-leading bioinformatics centre providing biological data to the scientific community with expertise in data storage, analysis and representation. EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academic and industry.</p>Fri, 10 Jul 2015 13:15:00 Z2015-07-10T13:15:00ZHinxton, UKhttp://careers.stackoverflow.com/jobs/94411/software-engineer-fulgent-therapeutics-llchttp://careers.stackoverflow.com/jobs/94411/software-engineer-fulgent-therapeutics-llcFulgent Therapeutics, LLCnode.jsjqueryjavascripthtml5sqlSoftware Engineer at Fulgent Therapeutics, LLC (Temple City, CA)<p>Fulgent Diagnostics is a rapidly growing CLIA-certified &amp; CAP-accredited diagnostics laboratory. We offer comprehensive next generation genetic testing and great customer service for a wide spectrum of genetic disorders for diagnosis, genetic counseling, and prenatal testing. We are seeking a full-time Node.js/Web developer to join our fast growing bioinformatics team.</p><br /><br /><p>Short Description:&nbsp;</p><br /><br /><p>"Full-time Node.js/UI Web Developer. Technologies: SQL, NodeJS, JQuery with knowledge in transaction processing. Minimum 2-years working experience. BA/BS in Computer Science.</p><br /><br /><p>Full Description:</p><br /><br /><p>Full-time Node.js/UI Web Developer</p><br /><br /><p>You'll be building web applications to enable our customers and enable our team members. You'll be thanked by both of them for improving our workflow, our turn-around-times, and for making their lives easier. You'll be building custom interfaces, work queues, weekly reports, dashboards, and integrating with several in-bound/out-bound interfaces. Above that, you'll be learning about bioinformatics and aiding in the diagnostic process of improving the lives of the customers we serve.</p><br /><br /><p>Must haves:</p><br /><ul><br /><li>Exceptional ability with node.js, jQuery, Javascript</li><br /><li>Exceptional ability with CSS, HTML5</li><br /><li>Exceptional ability with SQL, PL/SQL</li><br /><li>Exceptional ability with User Interface Design</li><br /><li>Experience&nbsp;building&nbsp;PDF Documents</li><br /><li>Experience building Reports and Dashboards</li><br /><li>Experience with GIT Source Control</li><br /><li>Experience with Windows and Linux</li><br /><li>Experience with Transaction Processing</li><br /><li>Experience manipulating data in JSON, XML, CSV, XLSX</li><br /><li>Deep understanding of Web Security and User Authentication</li><br /><li>Understanding of Browser Limitations</li><br /><li>Understanding of Locus of Control</li><br /><li>Strong communication skills</li><br /><li>Works well in teams and also works well alone</li><br /><li>Minimum 2 years working experience</li><br /><li>Minimum BA or BS in Computer Science or equivalent&nbsp;</li><br /></ul><br /><p>Nice to have:</p><br /><ul><br /><li>Experience&nbsp;with&nbsp;C/C++/Java/Scala</li><br /><li>Experience&nbsp;with&nbsp;python, bash, regular expression</li><br /></ul><br /><p>Must be willing to take a remote programming test as part of the application process. No independent contractors and no free-lancers.</p>Sat, 01 Aug 2015 19:15:00 Z2015-08-01T19:15:00ZTemple City, CAhttp://careers.stackoverflow.com/jobs/58544/front-end-developer-for-bioinformatics-and-doctor-evidencehttp://careers.stackoverflow.com/jobs/58544/front-end-developer-for-bioinformatics-and-doctor-evidenceDoctor Evidencecoffeescriptsingle-page-applicationrestlessbigdataFront End Developer for Bioinformatics and Evidence-Based Medicine at Doctor Evidence (Santa Monica, CA) (allows remote)<p>Doctor Evidence builds&nbsp;solutions used by doctors, educators, scientists, researchers, biomedical informaticians and manufacturers that will enables enormous advances for the improvement of human health.&nbsp;We are looking for an experienced Front End Web Developer to contribute to our next generation of web applications. You should have a good eye for design and detail, and an aptitude for tackling user interface and workflow challenges unique to big data analyses and complex scientific workflows.</p><br /><p>As a Javascript/Front End developer, you will be working on the front end development of the client application and user interface. You will work closely with our scientific product leads, bioinformaticians, and back end developers on developing tools and visualizations that support large-scale, sophisticated data analysis and interpretation.&nbsp;</p><br /><p>A good fit would be a developer who can execute quickly while still following best practices and who thrives on new technology and has an avid interest in bioinformatics and big data. You will be expected to help make decisions on front-end library usage, front-end architecture, third-party libraries, and lead implementation of design, styling and coding. You are a talented front-end developer who writes clean, modular code and composes higher level classes and modules beyond helper libraries like JQuery.</p><br /><p>Experience with healthcare, bioinformatics or life sciences is nice to have, but not required, but experience building web-based user interfaces and applications with complex, data-driven visualizations is a must.</p>Thu, 16 Jul 2015 23:15:00 Z2015-07-16T23:15:00ZSanta Monica, CAhttp://careers.stackoverflow.com/jobs/93547/systems-administrator-university-of-oxford-ndormshttp://careers.stackoverflow.com/jobs/93547/systems-administrator-university-of-oxford-ndormsUniversity of Oxford, NDORMS, Kennedy Institute of RheumatologylinuxvmwaremysqlpythonperlSystems Administrator at University of Oxford, NDORMS, Kennedy Institute of Rheumatology (Oxford, UK)<p>Do you have excellent understanding and experience of Linux/Unix Systems Administration? Would you like to be responsible for a implementing and managing a significant new high performance compute and storage facility which will provide cutting-edge bioinformatics capabilities to underpin the Kennedy Institutes&rsquo; world-leading research at the University of Oxford?</p><br /><p>You should be enthusiastic about working in at team where quality of service, attention to detail, and a willingness to respond positively to new challenges are all important.<br> <br> The successful candidate will be able to integrate into the team quickly, developing and maintaining the new HPC facility as well as being responsible for existing VMware and Equallogic IT infrastructure within the Institute. Doing so will require a Bachelor degree in a related discipline such as computer science, significant experience of managing systems in a Linux environment, of using configuration management solutions and of incorporating security into management of systems and infrastructure.</p><br /><p>If appointed you will work with the Kennedy IT Manager and Group Leader in Computational Genomics to provide support for computational biology researchers using the new HPC facility and to cover front line IT support for Institute members.</p><br /><p>In this role you will have the opportunity to acquire and develop skills - the University of Oxford is committed to supporting and developing its staff. Any previous experience or interest in bioinformatic and genomic sciences will be a bonus as this will allow them to interact effectively with the Institute scientists using the new platform.</p><br /><p>This is a full time, fixed term appointment for 2 years in the first instance. You will be required to upload a CV and a supporting statement. Please read the accompanying job description carefully and ensure that you have addressed each of the selection criteria in your supporting statement.</p><br /><p>The closing date for applications is 12 noon on Monday 17 August 2015.</p><br /><p>To apply for this role and for further details, including the job description and selection criteria, please click on the link below:</p><br /><p><a href="https://www.recruit.ox.ac.uk/pls/hrisliverecruit/erq_jobspec_version_4.jobspec?p_id=116706" rel="nofollow" rel="nofollow" rel="nofollow" rel="nofollow" rel="nofollow" rel="nofollow" rel="nofollow" rel="nofollow" rel="nofollow">https://www.recruit.ox.ac.uk/pls/hrisliverecruit/erq_jobspec_version_4.jobspec?p_id=116706</a></p>Wed, 22 Jul 2015 10:15:00 Z2015-07-22T10:15:00ZOxford, UKhttp://careers.stackoverflow.com/jobs/92922/product-manager-recombinehttp://careers.stackoverflow.com/jobs/92922/product-manager-recombineRecombineagile-project-managementuser-interfaceuser-experiencemathcomputer-scienceProduct Manager at Recombine (New York, NY)<p>Recombine seeks an individual to align our business objectives with our engineering roadmap as we expand our vision to new products. You will be responsible for designing new product features, working alongside the engineering team to integrate the most technologically advanced molecular medicine into routine clinical care.</p><br /><p><strong>Your Role</strong></p><br /><ul><br /><li>Manage and organize product backlog and roadmap for Recombine's suite of applications, spanning bioinformatics, lab management, and billing functionality</li><br /><li>Work with product stakeholders to identify key priorities and develop product strategy</li><br /><li>Orchestrate product roll-outs and plan/communicate releases across company</li><br /><li>Create and communicate product requirements, design ideas, user scenarios, and market analysis to bring the product strategy and roadmap to life</li><br /><li>Plan/prioritize epics, user-stories, and release cycles, ensuring that features and defects are prioritized in accordance with the long term goals of the company</li><br /><li>Identify, track, and analyze user behavior and trends and provide business updates to senior leadership</li><br /><li>Gather and interpret feedback from users (internal and external), to help shape and justify product decisions</li><br /><li>Articulate the clinical value of Recombine products to prospective partners, executives, and healthcare professionals</li><br /><li>Become an expert on competitors&rsquo; products in the marketplace</li><br /></ul>Tue, 14 Jul 2015 17:15:00 Z2015-07-14T17:15:00ZNew York, NYhttp://careers.stackoverflow.com/jobs/93113/sql-analyst-data-guru-equinixhttp://careers.stackoverflow.com/jobs/93113/sql-analyst-data-guru-equinixEquinixsqltableauexcelcomputer-sciencerSQL Analyst / Data Guru at Equinix (Redwood City, CA)<p>Do you want to leverage your technical data analytic skills to help a department of 400 people serving thousands of most demanding internet, network and financial companies manage their business, understand their performance and make better decisions?</p><br /><p>We are looking for people with strong analytical and SQL skills who would be able work closely with business partners, understand their requirements, find the right data source, identify the right analysis, write correct SQL code, format the results nicely and present them to the internal customers.</p><br /><p>If you ever wanted to move from "more technical" to "more business-oriented" side of data analysis, this is an opportunity for you!</p><br /><p>The position reports to Director, Client Service Operations and offer competitive compensation and growth path.</p>Thu, 16 Jul 2015 01:15:00 Z2015-07-16T01:15:00ZRedwood City, CAhttp://careers.stackoverflow.com/jobs/80468/senior-intermediate-cloud-devops-engineer-biomattershttp://careers.stackoverflow.com/jobs/80468/senior-intermediate-cloud-devops-engineer-biomattersBiomatterslinuxamazon-web-servicesjavasecuritydatabaseSenior/Intermediate Cloud DevOps Engineer at Biomatters (Auckland, New Zealand)<p>Our user base is growing fast and we are looking for an intermediate-senior DevOps engineer who can harness the latest in cloud infrastructure technologies to create scalable and secure applications in the area of computational biology and bioinformatics.</p><br /><p>This role will be fundamental to the development of our next generation cloud platform for bioinformatics analysis. You will be working closely with a number of developers with a varied collection of functional and technical objectives; this role requires prioritisation, communication and negotiation skills. The integrative nature of the role requires attention to detail, routine documentation, creative thinking, and a solutions-focused approach.</p><br /><ul><br /><li>Minimum 3 years commercial experience or equivalent</li><br /><li>Tertiary qualification in relevant field or equivalent</li><br /></ul><br /><p><em><strong>We are on the hunt for somebody to...</strong></em></p><br /><ul><br /><li>Be a founding member of the DevOps team Biomatters, working closely with our resident DevOps guru</li><br /><li>Help us choose technologies and establish process for the development, configuration, and deployment of our cloud-based infrastructure</li><br /><li>Deploy and administer Linux systems, and the associated virtual infrastructure, in a cloud environment.&nbsp;<br><em>NOTE: &nbsp;Cloud DevOps requires a different approach than traditional sysadmin, including managing virtual infrastructure through code and API calls</em></li><br /><li>Communicate frequently with development, executive and management teams to prioritise development and deployment activities</li><br /></ul>Mon, 20 Jul 2015 04:15:00 Z2015-07-20T04:15:00ZAuckland, New Zealandhttp://careers.stackoverflow.com/jobs/93156/software-developer-embl-ebihttp://careers.stackoverflow.com/jobs/93156/software-developer-embl-ebiEMBL-EBISoftware Developer at EMBL-EBI (Hinxton, UK)<p>The Vertebrate Genomics Team seeks an enthusiastic developer to work on the eHive pipeline management system for the Ensembl team at the European Bioinformatics Institute (EBI).<br><br>Ensembl is one of the most successful large-scale bioinformatics projects. Ensembl processes massive amounts of data from various genomic archives and also creates new resources for genome analysis. Most of its production workflows are driven by the eHive system. eHive is a task manager that keeps track of all jobs to be performed within a pipeline, and schedules them in the appropriate order, whilst allowing a high level of concurrency. It runs on top of bare job-scheduling systems (Platform LSF, Grid Engine, etc) and uses a relational database (MySQL, PostreSQL or SQLite) to synchronise jobs. The Ensembl team maintains about 50 pipelines that are frequently run on compute clusters of Sanger Institute and EBI for a total of 250 CPU years in 2014. eHive system can handle pipelines composed of 6 million jobs organised in 200 analyses; for some analyses the system can maintain at least 4,000 jobs running in parallel.<br><br>To improve modularisation of eHive pipelines, Remote Procedure Call (RPC) interface will have to be built into the system. It will allow one pipeline to trigger workflow execution in another pipeline (potentially on a different compute cluster) and receive the results, via a predefined interface. Such an interface will allow us to expose some of the Ensembl tools as components that users will be able to plug into their own analysis workflows. On the other hand, it will simplify integration of external compute resources implementing the other side of the interface into eHive pipelines. The first task for the successful candidate will be to design and implement RPC support for eHive in collaboration with the current eHive developer. In particular, this role will involve:<br>&bull; developing a method to efficiently track remote jobs<br>&bull; developing an interface for transferring parameters and data between pipelines<br>&bull; developing a method for transferring events (for example, job failure) back to the calling pipeline<br><br>Besides this, the candidate will participate in further developments of eHive, such as improving the graphical user interface, adding tools to ease designing pipelines, and adding new capabilities to the system to follow the requirements of the users. Engaging with collaborators and potential users, for example by giving talks and running workshops, will also be an essential part of the position.</p>Thu, 16 Jul 2015 14:15:00 Z2015-07-16T14:15:00ZHinxton, UKhttp://careers.stackoverflow.com/jobs/85823/senior-software-developer-build-a-large-scale-ontario-institute-for-cancerhttp://careers.stackoverflow.com/jobs/85823/senior-software-developer-build-a-large-scale-ontario-institute-for-cancerOntario Institute for Cancer Researchrestamazon-web-servicesangularjsjavahadoopSenior Software Developer - Build a large-scale cloud to improve cancer research at Ontario Institute for Cancer Research (Toronto, ON, Canada)<p><strong><span><span>Position:&nbsp; Senior Software Developer<br>Site:&nbsp;&nbsp; MaRS Centre&nbsp;<br>Department:&nbsp; Informatics &amp; Biocomputing&nbsp;&nbsp;<br>Reports To:&nbsp; Managing Director, Cloud Projects<br>Salary:&nbsp; Commensurate with level of experience<br>Hours: 35 Hrs/week&nbsp;<br>Status:&nbsp; Full-time, Permanent</span></span></strong></p><br /><p><span><span>The Ontario Institute for Cancer Research (OICR) is looking for a Senior Software Developer to contribute to the technical development of the Informatics and Biocomputing platform. This full-time position is primarily focused designing and building the software stack laying on top of the Cancer Genome Collaboratory infrastructure.&nbsp; Collaboratory will create a cloud-based computing facility for integrating and advancing technologies for manipulating, managing, and analyzing huge genomic data from thousands of individuals taken from the International Cancer Genome Consortium and other sequencing projects. This position will create secure and scalable, cloud-based software tools to support the analysis of upwards of 15 petabytes of cancer genomics data corresponding to 50,000 genomes.</span></span></p><br /><p><span><span>More details about collaboratory can be found at this address:</span></span><a href="http://oicr.on.ca/news/portal-newsletter/fighting-cancer-cloud-new-project-open-genomic-analysis-cancer-genomes-scientists-worldwide" rel="nofollow" rel="nofollow" rel="nofollow" rel="nofollow" rel="nofollow"><span><span>http://oicr.on.ca/news/portal-newsletter/fighting-cancer-cloud-new-project-open-genomic-analysis-cancer-genomes-scientists-worldwide</span></span></a></p><br /><p><strong><span><span>Starting from scratch, Collaboratory project is currently divided into 4 main modules:</span></span></strong></p><br /><ul><br /><li><span><span><strong>Infrastructure</strong>: Building the underlying infrastructure providing compute and storage resources.</span></span></li><br /><li><span><span><strong>Storage</strong>: Building the software stack to upload / download large amount of data into object storage solutions (S3, Ceph). Design the ID Service as well as authentication and authorization to perform such activities and access the data.</span></span></li><br /><li><span><span><strong>Data model</strong>: Building the data model used to index large amount of data as well as building the software stack supporting (and enforcing) this data model.</span></span></li><br /><li><span><span><strong>VM/Docker</strong>: Building the software stack to allow user to create (and manage) virtual machines (and docker containers) and share those with other researchers.</span></span></li><br /></ul><br /><p><span><span>Joining a team composed of architects, senior developers, bioinformaticians, business analysts, a successful candidate will participate in the design and implementation of software modules mentioned above (Infrastructure excl.).</span></span></p><br /><p><span><span>Collaboratory project rely on (or will possibly rely on) the following technologies: Openstack, Swift, AWS, Docker, Vagrant, Ansible, JClouds, Java, Spring, AWS, AngularJS, Hadoop, Elastic Search, Ubuntu, Ceph, Sensu, Graphite/Grafana...<br>This project is still in an early stage and the candidate will have its word in selecting and evaluating new technologies to be used.</span></span></p><br /><p><span><strong><span>Role responsibilities include:</span></strong></span></p><br /><ul><br /><li><span><span>Create RESTful microservices for the backend components</span></span></li><br /><li><span><span>Create frameworks and use existing cloud frameworks for managing fleets of Docker containers and/or VMs</span></span></li><br /><li><span><span>Create toolsets for managing the processing of data in cloud environments including AWS and a local OpenStack environment</span></span></li><br /><li><span><span>Create workflow systems and ETL for processing biological data efficiently, 10-15 PB of data will need to be analyzed yearly with enhanced community-based tools optimized for performance</span></span></li><br /><li><span><span>Research appropriate big data and cloud tools for use in our software stack</span></span></li><br /><li><span><span>Follow excellent coding practices for open source development (manage code in source control, write unit and regression tests, provide documentation on both public and private sites)</span></span></li><br /></ul>Fri, 10 Jul 2015 18:15:00 Z2015-07-10T18:15:00ZToronto, ON, Canadahttp://careers.stackoverflow.com/jobs/88172/sr-linux-storage-system-administrator-complete-genomicshttp://careers.stackoverflow.com/jobs/88172/sr-linux-storage-system-administrator-complete-genomicsComplete GenomicslinuxunixpythonperlsysadminSr Linux & Storage System Administrator at Complete Genomics (Mountain View, CA)<p><span>The Senior Linux &amp; Storage System Administrator is responsible for designing, implementing, and operating infrastructure and systems automation for HPC Linux/CentOS clusters and multi-petabyte storage systems. Requires working closely with the development and production engineering teams to define goals and solutions.</span></p><br /><p><span>To be considered, candidates must demonstrate an ability to provide high levels of customer service, experienced in supporting application development environments and production rollouts within a corporate computing environment. Additionally, requires candidate to participate in a 24x7 rotational coverage.</span></p>Sun, 12 Jul 2015 18:15:00 Z2015-07-12T18:15:00ZMountain View, CAhttp://careers.stackoverflow.com/jobs/88173/sr-windows-system-administrator-complete-genomicshttp://careers.stackoverflow.com/jobs/88173/sr-windows-system-administrator-complete-genomicsComplete GenomicswindowsnagiospuppetsplunkpowershellsysadminSr. Windows System Administrator at Complete Genomics (Mountain View, CA)<p>This is a senior-level Windows System Administrator that will play a key role in building a global Windows infrastructure to support the future of human genome sequencing. They will evaluate leading and emerging server technologies and set standards for the enterprise. The Sr. Windows Systems Administrator will implement infrastructure, automate and orchestrate services, deploy OS and application security including managing roles, access rights for LDAP and single sign-on.&nbsp; This is a critical IT function, so the candidate must have extensive experience in virtual environments, Windows server software, storage systems, and data center server infrastructure and operations.</p><br /><p>To be considered, candidates must demonstrate an ability to provide high levels of customer service, have built end to end application environment experienced in supporting application development environment and production rollout within a corporate computing environment. Additionally, requires candidate to participate in a 24x7 rotational coverage.</p>Sun, 12 Jul 2015 18:15:00 Z2015-07-12T18:15:00ZMountain View, CAhttp://careers.stackoverflow.com/jobs/93282/computational-biology-software-developer-database-great-lakes-bioenergyhttp://careers.stackoverflow.com/jobs/93282/computational-biology-software-developer-database-great-lakes-bioenergyGreat Lakes Bioenergy Research Centerruby-on-railsoraclemysqljavascriptrsysadminComputational Biology Software Developer/Database Designer at Great Lakes Bioenergy Research Center (Madison, WI)<p>The Great Lakes Bioenergy Research Center (GLBRC) is housed at the University of Wisconsin with collaborators at Michigan State University and other universities and national labs. The GLBRC is one of three Department of Energy centers established to conduct fundamental, genomics-based research on microbial and plant systems required to realize the national need for low-cost biofuels.</p><br /><p>As a member of a research team of faculty, staff and post docs, the Computational Biology Software Developer/Database Designer will be part of an Informatics team supporting the research objectives of the GLBRC in scientific computing and computational infrastructure. The position requires a highly motivated team player who will participate in the design and implementation of custom web-based and desktop applications and databases for use by GLBRC scientists. Specific duties may include database design and implementation, user requirements gathering, software analysis, design, implementation, testing and support. This will require effective communication and collaboration with end users (including researchers and bench scientists), bioinformaticians, software developers, and operational IT personnel.</p><br /><p>The candidate will design, develop, maintain and operate scientific and analytical software, databases and knowledgebases required by GLBRC. The well-qualified candidate will have knowledge of and experience in developing and maintaining medium-to-large scale strategic solutions in a research environment, using best practices and with minimal supervision, and will be sensitive to the needs of a collaborative but geographically dispersed research environment. The candidate will also help in developing and managing user training courses and sessions and should be comfortable communicating in a variety of formats to scientists, management and staff at all levels of a research institution.</p><br /><p>This position requires the ability to work both in a team and independently and the ability to communicate and collaborate with members of an inter-disciplinary team. The willingness and ability to rapidly learn new skills, concepts and technologies is vital.<br><br>This position offers an opportunity to play an important role in creating a keystone research center for the first great national challenge of the 21st century, sustainable energy independence. For additional information regarding the GLBRC, visit our website: http://www.glbrc.org.</p>Fri, 17 Jul 2015 18:15:00 Z2015-07-17T18:15:00ZMadison, WIhttp://careers.stackoverflow.com/jobs/89930/senior-software-engineer-abcamhttp://careers.stackoverflow.com/jobs/89930/senior-software-engineer-abcamAbcamscalapythonsqlSenior Software Engineer at Abcam (Cambridge, MA)<p>Come work for a growing biotech company and put your skills to use for a compnay that is helpiing scientists further important and life-saving reserach.</p><br /><p>We are seeking an in-house, full-stack, senior software developer to join our team of master craftsmen that are building a highly scalable, highly available, next generation platform for microfluidics and bioassay development. We will challenge you with some of the most difficult technical problems to solve and your reward -- beyond great pay and great benefits -- will be the satisfaction to contributing your talents to further important research being done. Here's your chance to make a difference! The successful candidate will work on the latest Scala open-source stack.</p><br /><p>You will be leading the development of our microfluidic production software systems that leverage signal processing and image analysis algorithms, as well as microcontrollers for hardware interaction. You will also have opportunity to make a difference working on liquid handling robotics and text analysis algorithms for our customer-facing literature search engine. Our culture is one that empowers individuals, with responsibility given at an early stage. We place great emphasis on knowledge and experience. The working environment is fun and fast-paced, with everybody working together as a team to deliver great service and the best products to our customers. In addition to competitive salaries we can offer an attractive flexible benefits package which includes share options. &nbsp;</p><br /><p><strong>Essential Responsibilities:</strong> &nbsp;</p><br /><ul><br /><li>Create and maintain software as required by internal and external customers</li><br /><li>Actively participate in any projects requiring a software component</li><br /><li>Troubleshoot issues, find and apply solutions within software and databases</li><br /><li>Design and integrate with business-critical systems, work on scalability, reliability, and improve performance</li><br /><li>Partner with the team to develop and implement technology solutions determined by the business needs.</li><br /><li>Provide support and knowledge in various techniques, trends, and methods.</li><br /><li>Document source code and usage procedures</li><br /><li>Collaborate with customers to ensure high customer satisfaction</li><br /><li>Continually think of, suggest, and help implement process improvements</li><br /><li>Actively participate in team meetings and discussions</li><br /><li>Improves operations by conducting systems analysis; recommending changes in policies and procedures.</li><br /><li>Updates job knowledge by studying state-of-the-art development tools, programming techniques, and computing equipment; participating in educational opportunities; reading professional publications; maintaining personal networks; participating in professional organizations.</li><br /></ul>Sun, 05 Jul 2015 16:15:00 Z2015-07-05T16:15:00ZCambridge, MAhttp://careers.stackoverflow.com/jobs/88374/information-security-engineer-code2cure-bina-technologieshttp://careers.stackoverflow.com/jobs/88374/information-security-engineer-code2cure-bina-technologiesBina TechnologiesencryptionsecuritynosqlhadoopsparkInformation Security Engineer - Code2Cure! at Bina Technologies (Redwood City, CA)<p><strong>Information Security Engineer </strong> <br>Are you interested in the intersection of genomics, bioinformatics and big data? &nbsp;Would you like to apply your security, design, and software skills to help define the next generation of medical genomic advances that accelerate the science of personalized medicine? Join us at the intersection of Computer Science and Life Science.&nbsp; #code2cure</p><br /><p>We are looking for a technical and hands-on information security expert who can help Bina software team spec out and implement various security capabilities as required by compliance standards and regulations as well as industry best practices. &nbsp;You will work with talented engineers and compliance team members to understand the product and apply your knowledge and skills for domain that improves human health.</p><br /><p><strong>How you will spend your time:</strong></p><br /><ul><br /><li>Application/Database Security Assessments</li><br /><li>Architecture/Software Security Architecture Planning/Review</li><br /><li>Secure Code Review</li><br /><li>Static/Dynamic Security Analysis</li><br /><li>Development and Implementation of Security SOPs</li><br /><li>Secure Practice SDLC Implementation</li><br /><li>Security Solution Implementation Support</li><br /><li>Compliance/Governance Support</li><br /><li>Incident Response</li><br /><li>FISMA NIST 800-37 Information Assurance</li><br /></ul>Wed, 15 Jul 2015 02:15:00 Z2015-07-15T02:15:00ZRedwood City, CA