micca (MICrobial Community Analysis) is a software pipeline for the
processing of amplicon sequencing data, from raw sequences to
OTU tables, taxonomy classification and phylogenetic tree
inference. The pipeline can be applied to a range of highly conserved
genes/spacers, such as 16S rRNA gene, Internal Transcribed
Spacer (ITS)18S and 28S rRNA. micca is an open-source, GPLv3-licensed
software.