EMBASSY HMMERNEW is a suite of application wrappers to the original hmmer v2.3.2 applications written by Sean Eddy. hmmer v2.3.2 must be installed on the same system as EMBOSS and the location of the hmmer executables must be defined in your path for EMBASSY HMMER to work.

The MIRA package is a fragment assembly program from Bastien Chevreux. The program was converted to EMBOSS by Alan Bleasby as two applications, one for EST assembly and one for shotgun fragment assembly