Information about vdjtools
--------------------------
This package was debianized using the mh_make command
from the maven-debian-helper package.
The build system uses Maven but prevents it from downloading
anything from the Internet, making the build compliant with
the Debian policy.

control file for libvdjtools-java_1.2.1+git20190311-1_all.deb (click to toggle)

Java library of vdjtools
The VDJtools are interacting with the R statistics environment
to characterize the constitution of the immune repertoire
of B and T cells.
This package provides the Java library.

copyright of libvdjtools-java_1.2.1+git20190311-1_all.deb (click to toggle)

Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: VDJtools
Source: https://github.com/mikessh/vdjtools/releases
Files: *
Copyright: 2015-2019 Bolotin Dmitry Chudakov <Dmitrychudakovdm@mail.ru, chudakovdm@gmail.com>,
Shugay Mikhail
License: non-free
Files: debian/*
Copyright: 2018, Steffen Moeller <moeller@debian.org>
License: non-free
License: non-free
.
All Rights Reserved
.
Permission to use, copy, modify and distribute any part of this program for
educational, research and non-profit purposes, by non-profit institutions
only, without fee, and without a written agreement is hereby granted,
provided that the above copyright notice, this paragraph and the following
three paragraphs appear in all copies.
.
Those desiring to incorporate this work into commercial products or use for
commercial purposes should contact the Inventors using one of the following
email addresses: chudakovdm@mail.ru, chudakovdm@gmail.com
.
IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
ARISING OUT OF THE USE OF THIS SOFTWARE, EVEN IF THE INVENTORS HAS BEEN
ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
.
THE SOFTWARE PROVIDED HEREIN IS ON AN "AS IS" BASIS, AND THE INVENTORS HAS
NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR
MODIFICATIONS. THE INVENTORS MAKES NO REPRESENTATIONS AND EXTENDS NO
WARRANTIES OF ANY KIND, EITHER IMPLIED OR EXPRESS, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY OR FITNESS FOR A
PARTICULAR PURPOSE, OR THAT THE USE OF THE SOFTWARE WILL NOT INFRINGE ANY
PATENT, TRADEMARK OR OTHER RIGHTS.

control file for vdjtools_1.2.1+git20190311-1_all.deb (click to toggle)

framework for post-analysis of B/T cell repertoires
VDJtools is an open-source Java/Groovy-based framework designed
to facilitate analysis of immune repertoire sequencing (RepSeq)
data. VDJtools computes a wide set of statistics and is able to perform
various forms of cross-sample analysis. Both comprehensive tabular
output and publication-ready plots are provided.
.
The main aims of the VDJtools Project are:
.
* To ensure consistency between post-analysis methods and results
* To save the time of bioinformaticians analyzing RepSeq data
* To create an API framework facilitating development of new RepSeq
analysis applications
* To provide a simple enough command line tool so it could be used by
immunologists and biologists with little computational background

NOTE: Copyright is the same as libvdjtools-java (libvdjtools-java_1.2.1+git20190311-1_all.deb).

Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: VDJtools
Source: https://github.com/mikessh/vdjtools/releases
Files: *
Copyright: 2015-2019 Bolotin Dmitry Chudakov <Dmitrychudakovdm@mail.ru, chudakovdm@gmail.com>,
Shugay Mikhail
License: non-free
Files: debian/*
Copyright: 2018, Steffen Moeller <moeller@debian.org>
License: non-free
License: non-free
.
All Rights Reserved
.
Permission to use, copy, modify and distribute any part of this program for
educational, research and non-profit purposes, by non-profit institutions
only, without fee, and without a written agreement is hereby granted,
provided that the above copyright notice, this paragraph and the following
three paragraphs appear in all copies.
.
Those desiring to incorporate this work into commercial products or use for
commercial purposes should contact the Inventors using one of the following
email addresses: chudakovdm@mail.ru, chudakovdm@gmail.com
.
IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS,
ARISING OUT OF THE USE OF THIS SOFTWARE, EVEN IF THE INVENTORS HAS BEEN
ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
.
THE SOFTWARE PROVIDED HEREIN IS ON AN "AS IS" BASIS, AND THE INVENTORS HAS
NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR
MODIFICATIONS. THE INVENTORS MAKES NO REPRESENTATIONS AND EXTENDS NO
WARRANTIES OF ANY KIND, EITHER IMPLIED OR EXPRESS, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY OR FITNESS FOR A
PARTICULAR PURPOSE, OR THAT THE USE OF THE SOFTWARE WILL NOT INFRINGE ANY
PATENT, TRADEMARK OR OTHER RIGHTS.