02masterfalse2NORMALthe master Jenkins node2This job generates the annotation data-files. The annotations are pulled from:
(1) manually annotated files from monarch-github-repo (created with Phenote)
(2) Orphanet (orphadata.org)
One file is generated which contains only the contents of the monarch-data. (Phenote-annotated by HPO-team) Note that negative annotations are separated in this step!
In the second file the datasets (phenotype-commons and orphanet) are merged and integrated into one big file.
BEFORE downloading: see http://human-phenotype-ontology.github.io/license.html
These files are then offered to all users as the build artifact.
Old builds are available on 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stability: No recent builds failed.icon-health-80plushealth-80plus.png100falsefalse1263http://compbio.charite.de/jenkins/job/hpo.annotations/1263/1263http://compbio.charite.de/jenkins/job/hpo.annotations/1263/1253http://compbio.charite.de/jenkins/job/hpo.annotations/1253/1263http://compbio.charite.de/jenkins/job/hpo.annotations/1263/1263http://compbio.charite.de/jenkins/job/hpo.annotations/1263/1253http://compbio.charite.de/jenkins/job/hpo.annotations/1253/1264falsehpo.annotations.monthlyhttp://compbio.charite.de/jenkins/job/hpo.annotations.monthly/blueNew annotation 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stability: 1 out of the last 5 builds failed.icon-health-60to79health-60to79.png80falsefalse5076http://compbio.charite.de/jenkins/job/hpo.annotations.2018/5076/5076http://compbio.charite.de/jenkins/job/hpo.annotations.2018/5076/5074http://compbio.charite.de/jenkins/job/hpo.annotations.2018/5074/5076http://compbio.charite.de/jenkins/job/hpo.annotations.2018/5076/5076http://compbio.charite.de/jenkins/job/hpo.annotations.2018/5076/5074http://compbio.charite.de/jenkins/job/hpo.annotations.2018/5074/5077falseThis monthly job generates the data that is based on HPO-obo-file and the annotation-file. The generated data includes files that map genes to HPO-terms (and vice versa) and a SQL-dump of the MYSQL-database version of the HPO and its annotations.
before downloading: see http://human-phenotype-ontology.github.io/license.html
artefacts of builds before #100 are available upon request from sebastian.koehler@charite.de
hpo.annotations.monthlyhpo.annotations.monthlyhpo.annotations.monthlyhpo.annotations.monthlyhttp://compbio.charite.de/jenkins/job/hpo.annotations.monthly/true153http://compbio.charite.de/jenkins/job/hpo.annotations.monthly/153/152http://compbio.charite.de/jenkins/job/hpo.annotations.monthly/152/149http://compbio.charite.de/jenkins/job/hpo.annotations.monthly/149/146http://compbio.charite.de/jenkins/job/hpo.annotations.monthly/146/142http://compbio.charite.de/jenkins/job/hpo.annotations.monthly/142/141http://compbio.charite.de/jenkins/job/hpo.annotations.monthly/141/140http://compbio.charite.de/jenkins/job/hpo.annotations.monthly/140/139http://compbio.charite.de/jenkins/job/hpo.annotations.monthly/139/blue139http://compbio.charite.de/jenkins/job/hpo.annotations.monthly/139/Build stability: No recent builds failed.icon-health-80plushealth-80plus.png100falsefalse153http://compbio.charite.de/jenkins/job/hpo.annotations.monthly/153/153http://compbio.charite.de/jenkins/job/hpo.annotations.monthly/153/153http://compbio.charite.de/jenkins/job/hpo.annotations.monthly/153/153http://compbio.charite.de/jenkins/job/hpo.annotations.monthly/153/154falsehpo.annotationshttp://compbio.charite.de/jenkins/job/hpo.annotations/blueInactivated. The artefacts of the latest build of this job are available at: http://compbio.charite.de/tl_files/HPO/uberphenohpo.ontology.uberphenohpo.ontology.uberphenohpo.ontology.uberphenohpo.ontology.uberphenohttp://compbio.charite.de/jenkins/job/hpo.ontology.uberpheno/falsedisabledfalsefalse1falseGenerate the zp.owl file and associated data.zp-owlzp-owlzp-owlzp-owlhttp://compbio.charite.de/jenkins/job/zp-owl/true30http://compbio.charite.de/jenkins/job/zp-owl/30/blue30http://compbio.charite.de/jenkins/job/zp-owl/30/Build stability: No recent builds failed.icon-health-80plushealth-80plus.png100falsefalse30http://compbio.charite.de/jenkins/job/zp-owl/30/30http://compbio.charite.de/jenkins/job/zp-owl/30/30http://compbio.charite.de/jenkins/job/zp-owl/30/30http://compbio.charite.de/jenkins/job/zp-owl/30/31falsebuilding from https://github.com/drseb/zebrafish-phenotype-ontologyzp-owl-jarzp-owl-jarzp-owl-jarzp-owl-jarhttp://compbio.charite.de/jenkins/job/zp-owl-jar/true6http://compbio.charite.de/jenkins/job/zp-owl-jar/6/5http://compbio.charite.de/jenkins/job/zp-owl-jar/5/blue5http://compbio.charite.de/jenkins/job/zp-owl-jar/5/Build stability: No recent builds failed.icon-health-80plushealth-80plus.png100falsefalse6http://compbio.charite.de/jenkins/job/zp-owl-jar/6/6http://compbio.charite.de/jenkins/job/zp-owl-jar/6/6http://compbio.charite.de/jenkins/job/zp-owl-jar/6/6http://compbio.charite.de/jenkins/job/zp-owl-jar/6/7falseGenerate the zp.owl file and associated data.zp-owl-newzp-owl-newzp-owl-newzp-owl-newhttp://compbio.charite.de/jenkins/job/zp-owl-new/true4http://compbio.charite.de/jenkins/job/zp-owl-new/4/3http://compbio.charite.de/jenkins/job/zp-owl-new/3/2http://compbio.charite.de/jenkins/job/zp-owl-new/2/1http://compbio.charite.de/jenkins/job/zp-owl-new/1/blue1http://compbio.charite.de/jenkins/job/zp-owl-new/1/Build stability: 3 out of the last 4 builds failed.icon-health-20to39health-20to39.png25falsefalse4http://compbio.charite.de/jenkins/job/zp-owl-new/4/4http://compbio.charite.de/jenkins/job/zp-owl-new/4/3http://compbio.charite.de/jenkins/job/zp-owl-new/3/4http://compbio.charite.de/jenkins/job/zp-owl-new/4/4http://compbio.charite.de/jenkins/job/zp-owl-new/4/3http://compbio.charite.de/jenkins/job/zp-owl-new/3/5falsehpo.annotationshttp://compbio.charite.de/jenkins/job/hpo.annotations/bluehpo.annotations.2018http://compbio.charite.de/jenkins/job/hpo.annotations.2018/bluehpo.annotations.monthlyhttp://compbio.charite.de/jenkins/job/hpo.annotations.monthly/bluehpo.ontology.uberphenohttp://compbio.charite.de/jenkins/job/hpo.ontology.uberpheno/disabledzp-owlhttp://compbio.charite.de/jenkins/job/zp-owl/bluezp-owl-jarhttp://compbio.charite.de/jenkins/job/zp-owl-jar/bluezp-owl-newhttp://compbio.charite.de/jenkins/job/zp-owl-new/blueallhttp://compbio.charite.de/jenkins/false0falsetruehpo.annotationshttp://compbio.charite.de/jenkins/job/hpo.annotations/bluehpo.annotations.2018http://compbio.charite.de/jenkins/job/hpo.annotations.2018/bluehpo.annotations.monthlyhttp://compbio.charite.de/jenkins/job/hpo.annotations.monthly/bluehpo.ontology.uberphenohttp://compbio.charite.de/jenkins/job/hpo.ontology.uberpheno/disabledzp-owlhttp://compbio.charite.de/jenkins/job/zp-owl/bluezp-owl-jarhttp://compbio.charite.de/jenkins/job/zp-owl-jar/bluezp-owl-newhttp://compbio.charite.de/jenkins/job/zp-owl-new/blueallhttp://compbio.charite.de/jenkins/