Allows to bin and annotate short paired-end reads. MetaCluster-TA is an assembly-assisted approach which, instead of annotating each read or assembled contig separately, bins similar reads/contigs into the same cluster and annotates the whole cluster. The software consists of three phases: (i) construction of long virtual contigs from assembly and probabilistic grouping of short reads, (ii) q-mer distribution estimation and clustering and (iii) cluster annotation and merging.

Type:

Desktop

MetaCluster-TA specifications

Unique identifier:

OMICS_01473

Interface:

Command line interface

Operating system:

Unix/Linux

Stability:

Stable

Software type:

Package/Module

Restrictions to use:

None

Computer skills:

Advanced

Maintained:

Yes

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