A python toolkit providing best-practice pipelines for fully automated high throughput sequencing analysis. You write a high level configuration file specifying your inputs and analysis parameters. This input drives a parallel pipeline that handles distributed execution, idempotent processing restarts and safe transactional steps. The goal is to provide a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.

Type:

Desktop

bcbio-nextgen specifications

Unique identifier:

OMICS_01121

Interface:

Command line interface

Operating system:

Unix/Linux, Mac OS, Windows

Parallelization:

MapReduce

Computer skills:

Advanced

High performance computing:

Yes

Software type:

Pipeline/Workflow

Restrictions to use:

None

Programming languages:

Python

License:

MIT License

Stability:

Stable

Maintained:

Yes

versioning

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