The "Project Management" allows users to easily manage projects
including input files and results from all tasks of the Genomatix Software Suite.
The project management page can be accessed by selecting
"Projects & Accounts -> Projects & Results"
from the top menu of each page.

Note: A working project management requires JavaScript to be activated
in your browser!
Additionally, users of Internet Explorer need at least version IE9.

Overview

Projects and results are presented in a master-detail view.
Projects are listed in the left panel. Expanding a project by clicking on its name will show an
overview of the associated input files (BAM, BigBed, VCF etc.) and available results for the various Genomatix tasks.
The number of available files/results of each type are given in a small box on the left.
Selecting a type of input or a task with results on the left side
will display all available files or results in the table on the right side.
Double-clicking a file or result will open it, whereas a single click will select the file
for further actions (see below).Note: If an input file appears in red, the file might not be available
(for reasons see below, special treatment of BAM files).

The application stays responsive, i.e. even while it is loading some information due to a user interaction, further interactions are still possible.

Note: There is always one default project called MyProject which cannot be deleted or renamed.

The section 'shared with' lists all users the project is shared with. Clicking on one of the users allowes to revoke the project from that specific user.
Different colors are used to indicate the permission the project was shared with.

You can also revoke the shared project from all users.
For that, simply click the button at the bottom of the info view.

If any new results become available the page will automatically update, and the results will be added to the view.

In addition, a notification popup will be displayed in the upper right corner when a new result becomes available.

Note: Unfortunately this feature won't work in any version of the Internet Explorer. Supported browsers are: Chrome 6.0+, Firefox 6.0+, Safari 5.0+, Opera 11.5+. Users of Internet Explorer need to reload the page manually to see any new results.

BAM files can be very(!) large. Therefore, when importing them via the 'GMS' or 'GGA'
option of the BAM file upload dialog, only meta information will be stored
in the Project Management, e.g. the path to the original BAM file, but the files won't be copied
to the Project Management. Each GGA tool/program
that accepts BAM files as input will fetch the BAM data directly
from the original BAM file location. If you delete the original BAM file on the GMS or
the GGA, then it will not be available for the GGA tools/programs any longer.
On the other hand, the original BAM file won't be changed when you delete the corresponding
BAM file entry in the Project Management!
The BAM file import via the 'local' option works just like the BED file import,
i.e. the BAM file itself will be stored in the Project Management.