Probably only the new ones at first, I suspect. Yoshi P had said he hoped entire linkshells would choose to move to the new servers along with their friends who got stuck on other servers so they could play together there.

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FFXI: Catwho on Bismarck: Retired December 2014

Thayos wrote:

I can't understand anyone who skips the cutscenes of a Final Fantasy game. That's like going to Texas and not getting barbecue.