The viewer is interactive. You can drag-and-drop nodes and zoom in and out using the
navigation tool on the bottom right. Click a node for more details.
Note: Large modules may take a while to display.

Visualized Using

Legend

Red Nodes: When filtering the module
by trait, the nodes adjacent to or contained by genetic features

Blue Edges: Inversely correlated relationship.

Genome View

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The network visualized using a circular genome plot. When filtering the module by trait,
the edges connecting nodes adjacent to or contained by genetic features are colored red.

When traits are selected, red edges are those where at least one node in the edge is contained within (QTL) or adjacent to (SNP) a genetic feature associated with the selected trait.

Network Edges

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The following edges exist in this module. When filtering the module by trait, this
report will change to indicate which edges overlap with the genetic features selected.

Please select a Module

Module Nodes

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The following nodes exist in this module. Annotations assigned to each node are listed.
This list does not change as traits are filtered.

Please select a Module

Function

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The following terms are enriched, or over-represented in comparison to the genome backgroud,
within the selected module.
The p-values associated with these terms were calculated in a prior analysis.
Therefore,
this report does not change as the module is filtered for traits.

Please select a Module

Overlap with Genetic Features

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Genes in this module are 'contained by' (e.g. QTL) or 'adjacent to' (e.g. SNP) the
following genetic features. This report will change automatically when the trait filters are changed.

Please select a Module

Filter By Trait

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The following form allows you to adjust this report by
selected values in the form below. Please note, that
updates to the reports may be slow for large modules.

Select Traits

Select a trait or map to filter the report below. Additionally, the
traits for the selected maps will be drawn on the genome view (click "Genome View"
tab above). You may select multiple traits or maps.

Genetic Feature Type:

Select a genetic feature type.

Traits:

Select traits to filter results.

Maps for the selected trait(s):

Select maps to filter results

Genetic Overlap:

By default a trait is shown in the report if a node in an edge
overlaps with at least one genetic feature. Change this number to require that an
edge overlap with more than just one feature.

Potential Markers

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Use this form to generate potential biomarkers for the nodes in this module. If
you have entered a trait filter then only those nodes that overlap the filter will be
used for finding nearby biomarkers. If no filter is provided then all nodes will be used.

Marker Range (bp):

Please provide the flanking region in base pairs around genes.
Potential markers within this flanking region of genes within the module will be
listed below. For example, enter 100 to include a marker that is 100bp up or downstream of
any gene in the module. Enter 0 to only include markers that lie between the start and
stop positions of genes.