Secondary Analysis

Most of the “secondary” analysis (which I consider playing with large text files) I try to do within my IPython Notebook or SQLShare. I put BLAST in this category and this is accomplished locally on 16 core machine (hummingbird) for big jobs or 4 core machine (greenbird) for light jobs. See example above for how I try to go from IPython to SQLShare.

These files are housed on a Synology NAS. My folder is public here. This is where I write and read working files to and from.

Pretty Pictures

After the secondary analysis, pretty pictures need to be made. Some examples of how this might be done…