WHM problems compiling apache on Fedora Core 3

We have a problem here. We have a server with fedora core 3 installed and whm.

When we try to compile apache, using easyapache, even specifying we want to compile with libraries and modules, and with php using GD, etc... the script ignores all the options and compiles with barely none selected.

I believe your getting the cannot open httpd.conf file because you upgraded to an EDGE release in cPanel then re-upgraded to a STABLE or RELEASE version. Try going back to an EDGE release and see if it helps, by default EDGE is not for production but I have found it to work just fine.