Structural Similarities for the Entities in PDB 1GC1

The following structural similarities have been found using the jFATCAT-rigid algorithm
[1,2].
To reduce the number of hits, a 40% sequence
identity clustering has been applied and a representative chain taken from each cluster.
If the representative chain consists of multiple domains, each domain is
included in the search. If available, the SCOP 1.75 domain assignment [3] is used.
Otherwise algorithmic domain assignments are computed
using the ProteinDomainParser [4].

Entity #1: Chains: G

Description:

ENVELOPE PROTEIN GP120 protein

Length:

321

No structure alignment results are available for
1GC1.G
explicitly.

It is
represented by chain
2NXY.A
which has more than 95% sequence identity.

%ID:
% sequence identity in the
alignment. A 40% sequence identity
filter is applied before the structure
alignments are calculated, so most
results show low similarity. If the
sequences are of vastly different
lengths, the clustering procedure will group
them in different clusters, even if they share
a region of high sequence similarity.

%Cov1: The coverage, or %, of aligned residues in chain 1

%Cov2: The coverage, or %, of aligned residues in chain 2

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