Posts by anioannides6

... Hello,
I have created a web service for a software that calculates Low Complexity Regions (LCRs) and masks a protein sequence. The service is controlled with Perl CGI; a user uses a form to paste the sequence, selects some options, and the result is displayed in the browser.
My question is: How c ...

... Hi all,
I have the following table(s) (showing a part here), where the position of aminoacid is shown in column 1 and the type (1 for lcr, -1 for disorder) is shown in column 2:
#AA Type
6 1
10 1
11 1
14 -1
15 -1
I would like your opinions on how to visualize ...

... I guess if you are to just check the pattern, it will be ok. If you are not interested in comparing the values directly maybe a heatmap will help you observe changes and similarities, although this is just a rough estimation. If you want to be more accurate I suppose you will have to perform statist ...

... I believe that the comparison of microarray and RNA-seq is not totally acceptable. In microarrays the signal, even when it's interpreted as value, has a max threshold that cannot surpass. It's an artifact due to the technique itself, because the microarray platforms can only measure up to a certain ...

... I have a table representing the presence/absence of proteins in different phyla and I've used MeV to create a binary heatmap where in X axis are all phyla and Y axis the proteins. My table has the following format:
Phylum 1 Phylum 2 Phylum 3
Protein 1 1 ...