Amborella trichopoda (Amborella trichopoda, AMTR1.0) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were aligned using the Translated Blat alignment algorithm (Kent W, Genome Res., 2002;12(4):656-64)
in Ensembl Plants release 75. Amborella trichopoda was used as the reference species. After running Translated Blat, the raw Translated Blat alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 256,615

Genome coverage (bp)

Coding exon coverage (bp)

Amborella trichopoda

Uncovered: 684,744,466 out of 706,332,640Covered: 21,588,174 out of 706,332,640

Uncovered: 15,604,303 out of 25,807,211Matches: 7,192,380 out of 25,807,211Mismatches: 3,007,568 out of 25,807,211Insertions: 2,960 out of 25,807,211

Oryza sativa Japonica Group

Uncovered: 359,427,246 out of 374,424,240Covered: 14,996,994 out of 374,424,240

Uncovered: 22,446,627 out of 34,124,807Matches: 8,240,647 out of 34,124,807Mismatches: 3,433,851 out of 34,124,807Insertions: 3,682 out of 34,124,807