Blog post prepared jointly by Andrew Doxey (@acdoxey) and Josh Neufeld (@joshdneufeld) The “aquariome” Back in 2013, as part of a project assessing aquarium microbial communities and their role in nutrient cycling, Laura Sauder (graduate student in the Neufeld lab) sequenced a shotgun metagenomic library from a freshwater aquarium biofilter that was installed on this …

The idea for GenomePeek began two years ago when I was working with Karl Klose, Liz Dinsdale, and Rob Edwards to assemble a P. salmonis genome that was being particularly difficult, even though we had 9 gigabases of sequencing. To check whether it was a single isolated genome I pulled out all the 16S reads …

POSTDOCTORAL FELLOWSHIPS IN FUNGAL TAXONOMY AND GENOMICS. Keith Seifert is looking for two post-docs, one interested in the identification of microfungi, and the other interested in participating in a genome project, for two-year positions in Ottawa, Canada. The first position is funded by the A.P. Sloan Foundation. A large and diverse collection of 6000-7000 strains isolated by …