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If you want to load only certain accounts, you need to skip the rest. And this can be really difficult to maintain in BPC conversion.

Since you are using NW, it would be easier to do this restriction in BW itself. You can have a cube with the same structure of you BPC application. Load the data from original cube to this BW cube. Use start or end routines or transformations using BADI, to do all the data massaging, and then finally load this data to BPC application.