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Configuring NMAP scans in fastrack

Is there a way to configure the type of scan that nmap does when running fasttrack in bt4 final. It seems that possibly all the scripts are not running and most of the ports come up as filtered or blocked, where a SYN scan -sS or a xmas scan -sX or a custom scan --scanflags could be used.

If you really like to go more advanced with network scanning, I wouldn't use nmap as primary
scanning tool - don't forget without modification of default settings, all your scans are simple
detetced by all known IPS/IDS sensors (nmap traffic patterns are too obvious!).
Use tools like unicornscan, hping2/3, scapy2