How much does a Applications Development & Systems Analyst at Fermilab make in Chicago, IL? The typical salary for a Fermilab Chicago Applications Development & Systems Analyst ranges from $98,960-$108,658, with an average salary of $102,834. Salary estimates based on 3 salary report(s) submitted anonymously to Glassdoor by Fermilab Applications Development & Systems Analyst employees in Chicago, IL or estimated based upon statistical methods.