Eleven colleges amongst these were earlier affiliated to University of Rajasthan Jaipur and later on their affiliation shifted to RAU with its establishment. Remaining 33 institutions were emerged after establishment of RAU through permission of state Govt, CCIM and RAU.

As per decision of the Board of Management, there is uniform fee structure for students in all AYUSH institutions of the State. Admissions in BAMS, BHMS and BUMS degree courses are made on merit basis through joint entrance test conducted by the RAU merit of senior secondary examination is the solo base for the admission in DAN&P course. The affiliated colleges are being periodically inspected for 'Quality Audit' to enforce needed educational standards.