Sorghum bicolor vs Zea mays LastZ Results

Sorghum bicolor (Sorghum bicolor, Sorghum_bicolor_NCBIv3) and Zea mays (Zea mays, B73_RefGen_v4) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release . Sorghum bicolor was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 424,040

Genome coverage (bp)

Coding exon coverage (bp)

Sorghum bicolor

Uncovered: 587,941,044 out of 708,735,318Covered: 120,794,274 out of 708,735,318

Uncovered: 5,702,055 out of 39,785,927Matches: 29,188,522 out of 39,785,927Mismatches: 4,143,836 out of 39,785,927Insertions: 751,514 out of 39,785,927

Zea mays

Uncovered: 1,996,176,118 out of 2,135,083,061Covered: 138,906,943 out of 2,135,083,061

Uncovered: 13,778,591 out of 48,442,923Matches: 31,282,322 out of 48,442,923Mismatches: 2,924,734 out of 48,442,923Insertions: 457,276 out of 48,442,923