Allows you to easily visualize your next-generation sequencing (NGS) samples at functional genomic regions. ngs.plot is a useful tool to help fill the gap between massive datasets and genomic information in this era of big sequencing data. ngs.plot is now available on the Galaxy tool shed.

Type:

Desktop

ngs.plot specifications

Unique identifier:

OMICS_00922

Interface:

Command line interface, Graphical user interface

Operating system:

Unix/Linux, Mac OS, Windows

License:

GNU General Public License version 2.0

Stability:

Stable

Maintained:

Yes

Software type:

Package/Module

Restrictions to use:

Academic or non-commercial use

Programming languages:

Python, R

Computer skills:

Advanced

Requirements:

doMC, BSgenome, Rsamtools, ShortRead

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1 user review

I use it to generate heatmaps and average profiles. Works good. You can choose to center your plots on TSS or on genebody and even enhancers (but works worse because of the incomplete database, of course). Usefull to quickly see if your reads or peaks are located where you expect them or not.