Oryza sativa Japonica Group vs Musa acuminata LastZ Results

Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Musa acuminata (Musa acuminata subsp. malaccensis, ASM31385v1) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release 76. Oryza sativa Japonica Group was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 113,251

Genome coverage (bp)

Coding exon coverage (bp)

Oryza sativa Japonica Group

Uncovered: 334,810,010 out of 374,424,240Covered: 39,614,230 out of 374,424,240

Uncovered: 10,040,575 out of 34,124,807Matches: 16,405,846 out of 34,124,807Mismatches: 7,002,088 out of 34,124,807Insertions: 676,298 out of 34,124,807

Musa acuminata subsp. malaccensis

Uncovered: 444,986,636 out of 472,960,417Covered: 27,973,781 out of 472,960,417

Uncovered: 19,900,890 out of 37,920,568Matches: 12,458,091 out of 37,920,568Mismatches: 5,139,140 out of 37,920,568Insertions: 422,447 out of 37,920,568