This movie is an alternative version of the TV series; it is composed of the two 2007 OVAs, edited to improve the pacing of the plot, and an extra segment akin to a TV episode where the cast are given the task of studying flowers. The plot has several differences to the TV series, most important being Sirius's death at the beginning, Apollo's different childhood and the more marked focus on the events of 12000 years ago, particularly Apollonius' death and Reika's previous incarnation's involvement.

As a pair of towers in Tokyo are being prepared for their grand opening, there is a series of murders of people connected to the towers. Conan suspects that the mysterious Syndicate may also be involved.

Takizawa prevented Japan's destruction - and then he vanished. Six months later, clues lead Saki to the Big Apple in search of her missing friend. Meanwhile, the remaining Selecao are plotting their final move. Some of them would prefer Takizawa dead and out of the way. Some might even be willing to help him achieve his goals. Unfortunately, some are prepared to destroy everything if it means claiming checkmate in Mr. Outside's puzzling game.

After a mysterious prisoner with only a few weeks left on his sentence breaks out of prison in Central City, the Elric brothers attempt to track him down. The search leads them to Table City in the southwestern country of Creta, where Alphonse rescues a young alchemist named Julia from the very man they are trying to capture. In the thick of the fight, they literally tumble into Julia's home turf, the slums of Milos Valley, and are embroiled in the grassroots rebellion of her people.

The year is 2030. Six months passed since the Laughing Man Incident was solved. About 3 million refugees are living in Japan, invited to fill the labor shortage. However, the emergent presence of the invited-refugees intensified their confrontation with the "Individualists", who called for national isolation, which then led to the increased incidences of terrorist attacks. Under these circumstances, a terrorist group called the Individual Eleven carries out a suicide attack. But there was a greater scheme behind their action. When Section 9 learns this, they attempt to nail down the mastermind of the incident. Meanwhile, Kuze, a surviving member of the Individual Eleven, becomes a charismatic leader of the invited-refugees and intensifies the confrontation against the government. And Motoko starts feeling a strange sense of fate connecting her with Kuze...

The story takes place in the year 2034, two years after the events in Ghost in the Shell: S.A.C. 2nd GIG. Female cyborg Major Motoko Kusanagi has left Public Security Section 9, an elite counter-terrorist and anti-crime unit specializing in cyber-warfare, which has expanded to a team of 20 field operatives with Togusa acting as the field lead.

The royal life of Princess Angelise Ikaruga Misurugi was as idyllic as the life of a sixteen-year-old princess could be. Beautiful, talented, athletic, loved by her people, and soon to be baptized in honor of her ascension to the throne of the Misurugi Empire, Angelise had everything. Even her kingdom was in a blissful age of peace and prosperity thanks to the utilization of an extremely advanced technology materialization force known as "mana."However, everything Angelise has come to know soon crashes to the ground around her after she is revealed to be a "norma," a member of society resistant to the effects of mana and unable to use it herself. Just like the rest of the norma, Angelise is arrested and removed from society. Now she's being forced to work as a soldier based out of the prison camp, Arzenal, and fly a transforming robotic vehicle called a "Paramail."To survive, Angelise will have to adapt to several different aspects of her new life: coping with prison society, relationships with other "norma" women, and piloting her Paramail against giant beasts known as DRAGONs.

Pretty Soldier Sailor Moon - Usagi Tsukino is an ordinary teenage girl who discovers that she is "Sailor Moon", The Pretty Soldier of love and justice. Guided by her guardian cat Luna, Usagi must find the moon princess and protect Earth from the Dark Kingdom. Joining Usagi are her new Sailor Senshi friends and the mysterious Tuxedo Mask.

Throughout time, mankind has chased after the dream of immortality.The Phoenix, in the form of a bird of fire, is said to hold the key to eternal life. Great warriors, greedy princesses, ambitious scientists and ordinary people desire its power. Great wars are fought in a vain attempt to possess it and, as a result, civilizations rise and fall. Phoenix is a collection of five stories from the past, present and future. Many will perish because of their desires, and they are the lucky ones. True pain comes for those who find immortality and experience the burden of living forever.

A catastrophic earthquake has left Tokyo, and most of the Earth for that matter, under the sea. Aika is a salvager who retrieves various remains from the watery ruins. When Aika accepts the dangerous mission of locating and obtaining the mysterious Lagu, she discovers that she's not the only one after it

In the future when technological enhancements and robotics are a way of life, Major Motoko Kusanagi and Section 9 take care of the jobs that are too difficult for the police. Section 9 employs hackers, sharpshooters, detectives and cyborgs all in an effort to thwart cyber criminals and their plans to attack the innocent.