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Abstract

Escherichia hermannii is an extremely rare etiological agent of
invasive infection, and thus, the bacterium was initially considered
non-pathogenic. However, in five previously reported case reports E.
hermannii has been implicated as the sole pathogen. Our case report
describes blood stream infection with E.hermannii in a
haemodialysis patient with persisting symptoms, high fever and inflammatory
markers despite appropriate antibiotic treatment until replacement of the
dialysis catheter. We suspect biofilm formation to be a crucial pathogenic
feature for E. hermannii in the maintenance of an infection, which
stresses the necessity of antibiotic treatment along with catheter replacement
in bloodstream- and catheter-related infection with E. hermannii.

INTRODUCTION

Escherichia hermannii is part of the bacilli family Enterobacteriaceae and was initially described as an E. coli-like biogroup. In 1982 Brenner et al. proposed E. hermannii as a distinct new species within the genus Escherichia based on DNA relatedness and phenotypic data. Primarily, the bacterium has been found in environmental sources, wounds, sputum, and stool - and was initially considered to be non-pathogenic [1, 2]. However, in five previously reported case reports comprising six patients, E. hermannii was the sole pathogen found; in purulent conjunctivitis, an infected cephalohematoma, two catheter-related bloodstream infections, sepsis, and pyelonephritis, respectively [3-8].

Case history

A 65-year-old male was admitted with fever, chills and sweating after a regular haemodialysis session. Furthermore, he had a 3-day history of diarrhoea. His medical record included dialysis-dependent end-stage renal disease, secondary to hypertensive nephropathy, and arthritis urica. Haemodialysis with a tunnelled haemodialysis catheter had been initiated 3 months earlier due to recurrent peritonitis during peritoneal dialysis. The tunnelled catheter was used as a temporary dialysis access until transition to an arteriovenous fistula, which had been inserted a couple of days prior to hospitalization. Due to arthritis urica, the patient was treated with prednisolone 25 mg once daily.

The empirical treatment was piperacillin-tazobactam 8 gram once daily intravenously (IV). In total 8 of 8 blood
culture bottles collected peripherally and from the tunnelled catheter and culture from the removed catheter tip grew
Gram-negative rods - thus, IV metronidazole 1.5 gm once daily was added to the treatment. The culture was identified as E. hermannii, and the isolate was found resistant to ampicillin but sensitive to mecillinam, cefuroxime, ceftazidime, meropenem, gentamicin, piperacillin-tazobactam and ciprofloxacin. On day 4 of hospitalization the patient evolved fever (42°C) and chills during haemodialysis. On day 6, the tunnelled catheter was replaced due to suspicion of biofilm formation. Thereafter, the patient experienced improvement in symptoms, lysis of fever, and decrease in CRP. The patient was discharged on day 8 and completed a 2-week antibiotic course with oral mecillinam. The patient has been followed up for 6 months, has been subscribed to ScandiaTransplant waiting list and is doing well.

Methods

Blood culture was performed using BacT/ALERT SA (aerobic) and BacT/ALERT SN (anaerobic) bottles incubated in the BacT/Alert 3D blood culture instrument (bioMérieux, Ballerup, Denmark). Positive blood cultures were Gram stained and inoculated on 5% horse blood agar plates and on modified Conradi Drigalski agar plates and incubated o/n. Colonies were identified by MALDI-TOF as E. hermannii with a logscore of 2.4 using a Microflex LT (Bruker Daltonics) with database version MBT-DB-56275. Susceptibility testing was performed by disc diffusion using Oxoid disc and interpreted using EUCAST breakpoints (http://www.eucast.org). Identification was verified by partial sequencing of 468 nt of the 16S rRNA gene, showing 100% similarity to E. hermannii type strain CIP 103176 (NR 104940.2). In short, PCR for the 16S rRNA gene was performed as described by Wilmotte et al. 1983 with some modifications (Wilmotte et al. 1993, FEBS, vol 317, s. 96-100). DNA was extracted from a fresh bacterial culture using the EasyMag Nuclisense system (Biomeriéux, Ballerup Denmark). In regard to PCR amplification we used the Thermo Scientific Fusion HF polymerase and a Bioer LifePro Termocycler, with the following amplification profile; 98oC for 30 s, followed by 25 cycles at 98oC for 10 s, 53oC for 20 s, and 72oC for 30 s, and final extension at 72oC for 5 min. Presence of a PCR product was verified using the QIAxcel capillary gel electrophoresis system (Qiagen, Copenhagen, Denmark). The PCR product was purified using the Qiagen MinElute PCR-purification kit before it was sequenced at Macrogene® (Macrogene, Amsterdam, Netherland). Forward and reverse sequences were aligned and visually checked using MicroSeq v. 2.1.1. Finally, the edited consensus sequence was used to query the NCBI bacterial database using BLASTn (http://blast.ncbi.nlm.nih.gov) for the species identification.

Results and Discussion

Initially, E. hermannii was considered non-pathogenic - but this case reported along with previously reported cases shows that it might be a pathogen. E. hermannii is an extremely rare etiological agent for invasive infections, and the bacterium is primarily an opportunistic pathogen, which causes disease in immunocompromised hosts or through use of a central catheter, as in the present case. Yamanaka et al. suggests that contributing factors to pathogenicity are the ability to produce mannose-rich exopolysaccharides and to form meshwork-like structures. Exopolysaccharide production and the presence of cell surface-associated meshwork-like structures are some of the common features associated with biofilm-forming bacteria [9].

To our knowledge, only 3 other case reports with E. hermannii causing bloodstream infection are reported. In the current case report we suspect biofilm formation to be a crucial pathogenic feature for E. hermannii, because of the lack of clinical improvement until removal of the dialysis catheter. However, biofilm formation and its potential role in infections with E. hermannii still have to be confirmed in other studies. Furthermore, E. hermannii has a natural resistance to penicillin, ampicillin, and carbenicillin because of its β-lactamase production - which complicates treatment [10]. Currently, there is insufficient clinical data on the optimal antibiotic treatment - but mostly various β-lactams and quinolones with in vivo susceptibility have been used.

CONFLICT OF INTEREST

The authors confirm that this article content has no conflict of interest.

About the Editor

Biography of Irina V. Kiseleva

Dr. Kiseleva obtained her MS in Microbiology from St Petersburg (SPb) State University, RF, PhD in Virology from Institute of Influenza, SPb, RF and DSci in Virology in Institute of Experimental Medicine (IEM), SPb, RF. She holds a position of Section Chief in IEM. She is also a Professor of SPb University, RF. She published over 280 publications including 40 RF patents. Currently she is the Editor-in-Chief of TOMICROJ, published by Bentham Science Publishers.

Department of Virology, Institute of Experimental Medicine, St. Petersburg, Russia

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Thomson Reuters has selected the following Journals published by Bentham Science Publishers for coverage in The Emerging Sources Citation Index (ESCI). ESCI is a new index launched by Thomson Reuters, extending the universe of publications in Web of Science to include high-quality, peer-reviewed publications of regional importance and in emerging scientific fields.

The Emerging Sources Citation Index (ESCI) is a new index launched by Thomson Reuters, extending the universe of publications in Web of Science to include high-quality, peer-reviewed publications of regional importance and in emerging scientific fields.

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Current Molecular Pharmacology publishes the latest developments in cellular and molecular pharmacology with a major emphasis on the mechanism of action of novel drugs under development, innovative pharmacological technologies, cell signaling, transduction pathway analysis, genomics, proteomics, and metabonomics applications to drug action.

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Current Psychiatry Reviews publishes frontier review articles and guest edited issues dedicated to clinical research on all the latest advances on clinical psychiatry and its related areas e.g. pharmacology, epidemiology, clinical care and therapy. The journal is essential reading for all clinicians, psychiatrists and researchers in psychiatry.

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