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FLAMES Summer School

9 - 20 September 2019

Gent, Belgium

FLAMES Summer Schoolhttps://www.flames-statistics.com/summer-school/https://tess.elixir-europe.org/events/flames-summer-schoolFLAMES (Flanders Training Network for Methodology and Statistics) organizes a two-week Summer School aiming at providing practical methodological and statistical training to young researchers (particularly PhD students) from all disciplines.
After the success of the FLAMES Summer School in 2013 (at KULeuven), 2014 (at UGent), 2015 (at VUB), 2016 (at UHasselt) , 2017 (at UAntwerp) and 2018 (at KULeuven) we are going to offer and even broader variety of courses from top lecturers around the world.
Whether you are a complete dummy, a starter with a limited knowledge, or a more experienced researcher with a broad basic knowledge in the world of methodology and statistics, the FLAMES summer school offers courses at your level, which emphasizes everyday research practice.
The program consists of 23 courses (called modules) from which participants can choose. Each module seamlessly connects theory with hands-on exercises or lab sessions, focusing on various disciplines and software packages whenever possible. The basic courses are combined in 2 recommended tracks, that directly connect to the prior knowledge of the participant. This year the FLAMES Summer School will take place at Gent University, De Sterre.2019-09-09 09:00:00 UTC2019-09-20 17:00:00 UTCKrijgslaan 281, Gent, BelgiumKrijgslaan 281GentOost-VlaanderenBelgiumGhent Universitysummerschool@flames-statistics.com[][]workshops_and_coursesregistration_of_interest[]

Bulk RNASeq analysis for differential expression

9 - 20 September 2019

Leuven, Belgium

Bulk RNASeq analysis for differential expressionhttps://training.vib.be/product/91https://tess.elixir-europe.org/events/bulk-rnaseq-analysis-for-differential-expressionDuring this training you will:
execute a complete workflow at command line or in GenePattern to go from raw fastq files to count files
execute a complete workflow in R to detect differential expression between two conditions
initiate functional annotation and interpretation of the list of differentially expressed genes
2019-09-09 09:00:00 UTC2019-09-20 00:00:00 UTCVIB Bioinformatics CorePark Inn by Radisson Leuven, Leuven, BelgiumPark Inn by Radisson LeuvenLeuvenBelgium3010[][][][][][]

A tour of machine learning: classification

13 - 14 January 2020

Gent, Belgium

A tour of machine learning: classificationhttps://training.vib.be/product/136https://tess.elixir-europe.org/events/a-tour-of-machine-learning-classification-b217275f-0a31-4994-b5c6-be3d999cc9f7Machine learning has become ubiquitous in biotechnology (as in many other fields), fueled largely by the increasing availability and amount of data. Learning algorithms can figure out how to perform important tasks by generalizing examples. Typical applications are diagnoses/prognoses, gene/protein annotation, drug design, image recognition, text mining and many others. However, building successful machine learning models requires a substantial amount of “black art” that is hard to find in textbooks. This course is an interactive Jupyter Notebook (Python) that will teach you how to build successful machine learning models. No background in machine learning is assumed, just a keen interest.2020-01-13 09:00:00 UTC2020-01-14 00:00:00 UTCVIB Bioinformatics CoreiGent, Gent, BelgiumiGentGentBelgium9052[][][][][][]

Hands on introduction to ChIP-seq and ATAC-seq analysis

17 February 2020

Leuven, Belgium

Hands on introduction to ChIP-seq and ATAC-seq analysishttps://training.vib.be/product/129https://tess.elixir-europe.org/events/hands-on-introduction-to-chip-seq-and-atac-seq-analysisThe aim is to:
have an understanding of the nature of ChIP-seq and ATAC-seq data
perform a complete analysis workflow including QC, read mapping, visualization in a genome browser and peak-calling using command line and open source software for each each step
have an overview of possible downstream analyses
perform a motif analysis with online web programs
This training does not cover all methods available today. It does not aim at bringing users to a professional NGS analyst level but provides enough information to allow biologists understand what DNA sequencing practically is and to communicate with NGS experts for more in-depth needs.2020-02-17 09:00:00 UTC2020-02-17 00:00:00 UTCVIB Bioinformatics CorePark Inn by Radisson Leuven, Leuven, BelgiumPark Inn by Radisson LeuvenLeuvenBelgium3010[][][][][][]

Mass spectrometry data processing

2 - 3 June 2020

Gent, Belgium

Mass spectrometry data processinghttps://training.vib.be/product/135https://tess.elixir-europe.org/events/mass-spectrometry-data-processing-f80a1c34-fcd4-40bf-83df-1ba4b05dd38e
Obtain a good understanding of the origins and properties of mass spec data
Obtain an understanding of the processing of mass spec data, aimed at identifying and quantifying peptides and proteins
Gain sufficient understanding of the software tools and database used, and of the issues and caveats involved, to critically analyse and assess results from mass spectrometry based proteomics experiments
2020-06-02 09:00:00 UTC2020-06-03 00:00:00 UTCVIB Bioinformatics CoreiGent, Gent, BelgiumiGentGentBelgium9052[][][][][][]

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