wPGSA

Download TF binding peak data

The detailed data of TF binding peak including location of the location of the peaks and the distance to the nearest transcription start site (TSS) annotated using the Bioconductor package ChIPpeakAnno and TSS annotation data “TSS.mouse.NCBIM37”.

TF: The Uniprot symbol of transcription factor

peak file: The name of the peak file. The corresponding TF and cell types can be found in the meta data (wPGSA_data_info.xlsx)

space: The name of the chromosome

start: The starting position of the peak in the chromosome

end: The ending position of the peak in the chromosome

width: The width of the peak

strand: Either ‘+’ or ‘-‘. If ‘-‘, then the alignment of the feature is to the reverse-complemented source (usually ‘+')

feature: The Ensemble Gene ID of the nearest gene

start_position: The starting position of the nearest gene

end_position: The ending position of the nearest gene

feature_strand: The strand of the nearest gene

insideFeature:

upstream: peak resides upstream of the gene gene

downstream: peak resides down-stream of the gene

inside: peak resides inside the gene

overlapStart: peak overlaps with the start of the gene

overlapEnd: peak overlaps with the end of the gene

includeFeature: peak include the gene (impractical)

distancetoFeature: distance between the start of the peak and the TSS of the nearest gene