Predation has been suggested to play a major role in the evolution of primate ecology, although reports of predation events are very rare. Mammalian carnivores, raptors, and snakes are known predators of Neotropical primates, and most reported attacks by snakes are attributed to Boa constrictor (terrestrial boas). Here, we document the predation of a squirrel monkey (Saimiri sciureus) by an Amazontreeboa (Corallus hortulanus), the first record of the predation of a platyrrhine primate by this boid. The event was recorded during a nocturnal herpetological survey in the Piratuba Lake Biological Reserve, in the north-eastern Brazilian Amazon. The snake was encountered at 20:00 hours on the ground next to a stream, at the final stage of ingesting the monkey. The C. hortulanus specimen was 1620 mm in length (SVL) and weighed 650 g, while the S. sciureus was a young adult female weighing 600 g, 92 % of the body mass of the snake and the largest prey item known to have been ingested by a C. hortulanus. The evidence indicates that the predation event occurred at the end of the afternoon or early evening, and that, while capable of capturing an agile monkey like Saimiri, C. hortulanus may be limited to capturing small platyrrhines such as callitrichines. PMID:27165689

Multiple tissues were evaluated from dead emerald treeboas, Corallus caninus, that were from a collection where chlamydiosis was diagnosed. To determine the strain of chlamydia infecting these snakes, tissue samples from 5 frozen snakes were tested by a TaqMan PCR test and a PCR-sequence analysis ...

The Boa constrictor is one of the world's largest vertebrate carnivores and is often found in urban areas in the city of Manaus, Brazil. The morphological identification of ticks collected from 27 snakes indicated the occurrence of Amblyomma dissimile Koch 1844 on all individuals sampled. In contrast, Amblyomma rotundatum Koch was found on only two snakes. An analysis of the 16S rRNA molecular marker confirmed the morphological identification of these ectoparasites. PMID:25517537

An adult Madagascar treeboa (Sanzinia madagascariensis) underwent coeliotomy for investigation of a coelomic mass. At surgery, a large mass originating from the peri-pancreatic adipose tissue and involving the gall bladder was removed. The snake did not recover from general anesthesia. A complete postmortem was performed, and samples were submitted to the University of Glasgow for histopathology. On histological examination, the mass was composed of adipose tissue infiltrated with a poorly demarcated spindle cell neoplasm. The neoplastic cells were highly pleomorphic with abundant cytoplasm and frequent clear cytoplasmic vacuoles, suggestive of adipocyte origin. Immunohistochemical characterization of the mass was inconclusive. Metastatic neoplastic cells were present within vessels in the liver, lungs, and brain. As an incidental finding, the gonads contained both maturing ovarian follicles and seminiferous tubules with intact germinal epithelium and evidence of spermatogenesis, along with other features of male and female gonad anatomy. The current report describes a rare neoplasm in snakes within an intersex Madagascar treeboa. PMID:23345276

Wetlands are the largest source of methane to the atmosphere, but emission estimates are highly uncertain leading to large discrepancies between emission inventories and much larger estimates of the Amazon methane source derived at larger scales. We examined methane emissions from all emission pathways including aquatic surfaces, emergent soils and herbaceous vegetation and more than 2000 trees from 13 locations across the central Amazon floodplain in 2014. Our data are the first measurements of stem emission from emergent portions of inundated trees in the Amazon and they demonstrate that regionally, tree stems are the dominant means of emissions for soil produced methane to the atmosphere. Emissions via the range of egress pathways varied substantially between sample locations and water-table exerted some control over emissions from ~2m below the soil surface upto 0.5-1m of inundation. Higher water (upto ~10m of inundation) exerted no further control over emissions. Applying our measurements to models of whole tree emission and scaling to the entire Amazon lowland basin demonstrates the significant contribution of trees to regional emissions that can close the Amazon basin methane budget.

The Amazon basin is a center of deep atmospheric convection and thus acts as a major engine for global hydrologic circulation. Yet despite its significance, a full understanding of Amazon rainfall variability remains elusive due to a poor historical record of climate. Temperate tree rings have been used extensively to reconstruct climate over the last thousand years, however less attention has been given to the application of dendrochronology in tropical regions, in large part due to a lower frequency of tree species known to produce annual rings. Here we present a tree ring record of drought extremes from the Madre de Dios region of southeastern Peru over the last 190 years. We confirm that tree ring growth in species Cedrela odorata is annual and show it to be well correlated with wet season precipitation. This correlation is used to identify extreme dry (and wet) events that have occurred in the past. We focus on drought events identified in the record as drought frequency is expected to increase over the Amazon in a warming climate. The Cedrela chronology records historic Amazon droughts of the 20th century previously identified in the literature and extends the record of drought for this region to the year 1816. Our analysis shows that there has been an increase in the frequency of extreme drought (mean recurrence interval = 5-6 years) since the turn of the 20th century and both Atlantic and Pacific sea surface temperature (SST) forcing mechanisms are implicated.

The increased frequency and severity of drought conditions in the Amazon Basin region have emphasized the question of rainforest vulnerability and resilience to heat and drought-induced stresses. However, what emerges from much research is that the impacts of droughts, essential controlling factors of the rainforest function, and variability of tree-scale strategies are yet to be fully understood. We present here a preliminary analysis of hydraulic relations of a seasonal Amazon rainforest using a set of ecohydrologic data collected through the GoAmazon project over dry and wet seasons. Expressions of different hydraulic strategies are identified that convey different implications for tree resilience during short- (diurnal) and longer-term (seasonal) stress periods. These hydraulic strategies appear to be inter-related with the tree growth and non-structural carbohydrate dynamics, contributing to the understanding of trait coordination at the whole-plant scale. Integration of individual responses is conducted over a range of wood density and exposure conditions. The results of this research thus shed light on the implication of variations in the rainforest function for future stresses, vital for predictive models of ecosystem dynamics of next generation.

Tropical rain forest has been a persistent feature in South America for at least 55 million years. The future of the contemporary Amazon forest is uncertain, however, as the region is entering conditions with no past analogue, combining rapidly increasing air temperatures, high atmospheric carbon dioxide concentrations, possible extreme droughts, and extensive removal and modification by humans. Given the long-term Cenozoic cooling trend, it is unknown whether Amazon forests can tolerate air temperature increases, with suggestions that lowland forests lack warm-adapted taxa, leading to inevitable species losses. In response to this uncertainty, we posit a simple hypothesis: the older the age of a species prior to the Pleistocene, the warmer the climate it has previously survived, with Pliocene (2.6–5 Ma) and late-Miocene (8–10 Ma) air temperature across Amazonia being similar to 2100 temperature projections under low and high carbon emission scenarios, respectively. Using comparative phylogeographic analyses, we show that 9 of 12 widespread Amazontree species have Pliocene or earlier lineages (>2.6 Ma), with seven dating from the Miocene (>5.6 Ma) and three >8 Ma. The remarkably old age of these species suggest that Amazon forests passed through warmth similar to 2100 levels and that, in the absence of other major environmental changes, near-term high temperature-induced mass species extinction is unlikely. PMID:23404439

Previous work has shown that tree turnover, tree biomass and large liana densities have increased in mature tropical forest plots in the late twentieth century. These results point to a concerted shift in forest ecological processes that may already be having significant impacts on terrestrial carbon stocks, fluxes and biodiversity. However, the findings have proved controversial, partly because a rather limited number of permanent plots have been monitored for rather short periods. The aim of this paper is to characterize regional-scale patterns of 'tree turnover' (the rate with which trees die and recruit into a population) by using improved datasets now available for Amazonia that span the past 25 years. Specifically, we assess whether concerted changes in turnover are occurring, and if so whether they are general throughout the Amazon or restricted to one region or environmental zone. In addition, we ask whether they are driven by changes in recruitment, mortality or both. We find that: (i) trees 10 cm or more in diameter recruit and die twice as fast on the richer soils of southern and western Amazonia than on the poorer soils of eastern and central Amazonia; (ii) turnover rates have increased throughout Amazonia over the past two decades; (iii) mortality and recruitment rates have both increased significantly in every region and environmental zone, with the exception of mortality in eastern Amazonia; (iv) recruitment rates have consistently exceeded mortality rates; (v) absolute increases in recruitment and mortality rates are greatest in western Amazonian sites; and (vi) mortality appears to be lagging recruitment at regional scales. These spatial patterns and temporal trends are not caused by obvious artefacts in the data or the analyses. The trends cannot be directly driven by a mortality driver (such as increased drought or fragmentation-related death) because the biomass in these forests has simultaneously increased. Our findings therefore indicate that

Blowdowns are a recurrent characteristic of Amazon forests and are produced, among others, by squall lines. Squall lines are aligned clusters (typical length of 1000 km, width of 200 km) of deep convective cells that produce heavy rainfall during the dry season and significant rainfall during the wet season. These squall lines (accompanied by intense downbursts from convective cells) have been associated with large blowdowns characterized by uprooted, snapped trees, and trees being dragged down by other falling trees. Most squall lines in Amazonia form along the northeastern coast of South America as sea breeze-induced instability lines and propagate inside the continent. They occur frequently (~4 times per month), and can reach the central and even extreme western parts of Amazonia. Squall lines can also be generated inside the Amazon and propagate toward the equator. In January 2005 a squall line propagated from south to north across the entire Amazon basin producing widespread forest tree mortality and contributed to the elevated mortality observed that year. Over the Manaus region (3.4 x104 km2), disturbed forest patches generated by the squall produced a mortality of 0.3-0.5 million trees, equivalent to 30% of the observed annual deforestation reported in 2005 over the same area. The elevated mortality observed in the Central Amazon in 2005 is unlikely to be related to the 2005 Amazon drought since drought did not affect Central or Eastern Amazonia. Assuming a similar rate of forest mortality across the basin, the squall line could have potentially produced tree mortality estimated at 542 ± 121 million trees, equivalent to 23% of the mean annual biomass accumulation estimated for these forests. Our results highlight the vulnerability of Amazontrees to wind-driven mortality associated with convective storms. This vulnerability is likely to increase in a warming climate with models projecting an increase in storm intensity.

ABSTRACT Inclusion body disease (IBD) is an infectious fatal disease of snakes typified by behavioral abnormalities, wasting, and secondary infections. At a histopathological level, the disease is identified by the presence of large eosinophilic cytoplasmic inclusions in multiple tissues. To date, no virus or other pathogen has been definitively characterized or associated with the disease. Using a metagenomic approach to search for candidate etiologic agents in snakes with confirmed IBD, we identified and de novo assembled the complete genomic sequences of two viruses related to arenaviruses, and a third arenavirus-like sequence was discovered by screening an additional set of samples. A continuous boa constrictor cell line was established and used to propagate and isolate one of the viruses in culture. Viral nucleoprotein was localized and concentrated within large cytoplasmic inclusions in infected cells in culture and tissues from diseased snakes. In total, viral RNA was detected in 6/8 confirmed IBD cases and 0/18 controls. These viruses have a typical arenavirus genome organization but are highly divergent, belonging to a lineage separate from that of the Old and New World arenaviruses. Furthermore, these viruses encode envelope glycoproteins that are more similar to those of filoviruses than to those of other arenaviruses. These findings implicate these viruses as candidate etiologic agents of IBD. The presence of arenaviruses outside mammals reveals that these viruses infect an unexpectedly broad range of species and represent a new reservoir of potential human pathogens. PMID:22893382

Wind disturbance has been a frequently overlooked abiotic cause of mass tree mortality in the Amazon basin. In the Peruvian Amazon these wind disturbances are produced by meteorological events such as convective systems. Downbursts for example produce short term descendent wind speeds that can be in excess of 30 m s-1. These are capable of producing tree blowdowns which have been reported to be as large as 33 km2 in the Amazon basin. We used the chronosequence of Landsat Satellite imagery to find and locate where these blowdowns have occurred in the Loreto region of the Peruvian Amazon. Spectral Mixture Analysis was used to estimate the proportion landcover of green vegetation, non-photosynthetic vegetation (NPV), soil and shade in each pixel. The change in NPV was calculated by subtracting the NPV signal in the Landsat image prior to the blowdown occurrence, from the image following the disturbance. Our prior research has established a linear relationship between tree mortality and change in NPV. It is hypothesized that these mass tree mortality events result in changes in the tree species assemblage of affected forests. Here we present preliminary tree species assemblage data from two sites in the Peruvian Amazon near Iquitos, Peru. The site (ALP) at the Allpahuayo Mishana reserve (3.945 S, 73.455 W) is 30 km south of Iquitos, Peru, and hosts the remnants of a 50 ha blowdown that occurred in either 1992 or 1993. Another site (NAPO) on the Napo river about 60 km north of Iquitos, is the location of an approximately 300 ha blowdown that occurred in 1998. At each site, a 3000 m x 10 m transect encompassing non disturbed and disturbed areas was installed, and trees greater than 10 cm diameter at breast height were measured for diameter, height and were identified to the species. Stem density of trees with diameter at breast height > 10 cm, and tree height appear to be similar both inside and outside the blowdown affected areas of the forests at both sites. At the ALP

In the state of Para, Brazil, in the eastern Amazon, the authors studied the potential for sustained fire events within four dominant vegetation cover types (undisturbed rain forest, selectively logged forest, second-growth forest, and open pasture), by measuring fuel availability, microclimate, and rates of fuel moisture loss. They also estimated the potential tree mortality that might result from a wide-scale Amazon forest fire by measuring the thermal properties of bark for all trees in a 5-ha stand of mature forest, followed by measurements of heat flux through bark during simulated fires. In pastures the average midday temperature was almost 10{degree}C greater and the average midday relative humidity was 30% lower than in primary forest. The most five-prone ecosystem was the open pasture followed by selectively logged forest, second growth forest, and undisturbed rain forest in which sustained combustion was not possible even after prolonged rainless periods. Even though the autogenic factors in primary forest of the eastern Amazon create a microclimate that virtually eliminates the probability of fire, they are currently a common event in disturbed areas of Amazonia. As many as 8 {times} 10{sup 6} ha burned in the Amazon Basin of Brazil in 1987 alone. In terms of current land-use patterns, altered microclimates, and fuel mass, there are also striking similarities between the eastern Amazon and East Kalimantan, Indonesia (the site of recent rain forest wildfires that burned 3.5 {times} 10{sup 6} ha).

Tropical forests have a great importance in the global carbon cycle, especially with regard to biomass. Some models predict that these forests can be vulnerable to carbon loss due to global warming-induced drought increases, while others contradict this theory. So, it is necessary to assess changes in carbon storage over time to better understand the future trends of this scenario. In this sense, this work has as its main objective the evaluation of tree diameter increment and the amount of litter, in a region of the eastern Amazon rainforest. 1000 dendometric trees bands were installed in different taxonomic families and size classes over four transects represent 4 ha each, as well as 60 collectors (litter traps). The trees of the forest had a higher growth in November and a smaller diameter increment in the month of September. The trees of the size class 55-90 cm were the most grown up followed by class > 90 cm trees. A likely factor that drove this episode was the height of the canopy of these trees. Pearson's correlation analysis showed correlation of 55-90 cm class with temperature and precipitation. The production of litter has an average production within the range found in the literature between 200 and 1700 kg.ha.ano-1. Further studies are needed in order to understand more clearly, what are the key factors that drive or limit the growth of tree species in the Amazon.

A new Penicillium species, P. excelsum, is described here using morphological characters, extrolite and partial sequence data from the ITS, β-tubulin and calmodulin genes. It was isolated repeatedly using samples of nut shells and flowers from the brazil nut tree, Bertolletia excelsa, as well as bees and ants from the tree ecosystem in the Amazon rainforest. The species produces andrastin A, curvulic acid, penicillic acid and xanthoepocin, and has unique partial β-tubulin and calmodulin gene sequences. The holotype of P. excelsum is CCT 7772, while ITAL 7572 and IBT 31516 are cultures derived from the holotype. PMID:26717519

A new Penicillium species, P. excelsum, is described here using morphological characters, extrolite and partial sequence data from the ITS, β-tubulin and calmodulin genes. It was isolated repeatedly using samples of nut shells and flowers from the brazil nut tree, Bertolletia excelsa, as well as bees and ants from the tree ecosystem in the Amazon rainforest. The species produces andrastin A, curvulic acid, penicillic acid and xanthoepocin, and has unique partial β-tubulin and calmodulin gene sequences. The holotype of P. excelsum is CCT 7772, while ITAL 7572 and IBT 31516 are cultures derived from the holotype. PMID:26717519

Climate change is expected to increase the intensity of extreme precipitation events in Amazonia that in turn might produce more forest blowdowns associated with convective storms. Yet quantitative tree mortality associated with convective storms has never been reported across Amazonia, representing an important additional source of carbon to the atmosphere. Here we demonstrate that a single squall line (aligned cluster of convective storm cells) propagating across Amazonia in January, 2005, caused widespread forest tree mortality and may have contributed to the elevated mortality observed that year. Forest plot data demonstrated that the same year represented the second highest mortality rate over a 15-year annual monitoring interval. Over the Manaus region, disturbed forest patches generated by the squall followed a power-law distribution (scaling exponent α = 1.48) and produced a mortality of 0.3-0.5 million trees, equivalent to 30% of the observed annual deforestation reported in 2005 over the same area. Basin-wide, potential tree mortality from this one event was estimated at 542 ± 121 million trees, equivalent to 23% of the mean annual biomass accumulation estimated for these forests. Our results highlight the vulnerability of Amazontrees to wind-driven mortality associated with convective storms. Storm intensity is expected to increase with a warming climate, which would result in additional tree mortality and carbon release to the atmosphere, with the potential to further warm the climate system.

Spectral properties of foliage express fundamental chemical interactions of canopies with solar radiation. However, the degree to which leaf spectra track chemical traits across environmental gradients in tropical forests is unknown. We analyzed leaf reflectance and transmittance spectra in 2567 tropical canopy trees comprising 1449 species in 17 forests along a 3400-m elevation and soil fertility gradient from the Amazonian lowlands to the Andean treeline. We developed quantitative links between 21 leaf traits and 400-2500-nm spectra, and developed classifications of tree taxa based on spectral traits. Our results reveal enormous inter-specific variation in spectral and chemical traits among canopy trees of the western Amazon. Chemical traits mediating primary production were tightly linked to elevational changes in foliar spectral signatures. By contrast, defense compounds and rock-derived nutrients tracked foliar spectral variation with changing soil fertility in the lowlands. Despite the effects of abiotic filtering on mean foliar spectral properties of tree communities, the spectra were dominated by phylogeny within any given community, and spectroscopy accurately classified 85-93% of Amazonian tree species. Our findings quantify how tropical tree canopies interact with sunlight, and indicate how to measure the functional and biological diversity of forests with spectroscopy. PMID:24942328

Reports of successful predator attacks on primates are rare. Primates from all major radiations are particularly susceptible to raptors, carnivores, and snakes. Among New World primates, reports of snake predation are limited to medium- and small-bodied species. Here, we report the first documented case of successful predation of an atelid by a snake-an adult female Purús red howler monkey, Alouatta puruensis, that was subdued by a ca. 2-m-long Boa constrictor in an arboreal setting at a height of 7.5 m above the ground. The victim belonged to a group composed of six individuals (one adult male, two adult females, two juveniles, and one infant) that inhabited a ca. 2.5-ha forest fragment in the State of Rondônia, western Brazilian Amazon. The boa applied the species' typical hunting behavior of striking and immediately coiling around its prey and then killing it through constriction (probably in less than 5 min), but the entire restraint period lasted 38 min. The attack occurred around noon. The howler was swallowed head-first in 76 min. The only group member to respond to the distress vocalization emitted by the victim was the other adult female, which was closest to the location where the attack occurred. This female ran toward the snake, also vocalizing, and hit it with her hands several times, but the snake did not react and she moved off to a nearby tree from where she watched most of the interaction. The remaining group members stayed resting at a height approximately 15 m above the victim in a nearby tree without showing any overt signs of stress, except for a single whimper vocalization. This event indicates that even large-bodied atelids are vulnerable to predation by large snakes and suggests that B. constrictor may be a more common predator of primates. PMID:23917944

Canopy gaps created by wind-throw events, or blowdowns, create a complex mosaic of forest patches varying in disturbance intensity and recovery in the Central Amazon. Using field and remote sensing data, we investigated the short-term (four-year) effects of large (>2000 m2) blowdown gaps created during a single storm event in January 2005 near Manaus, Brazil, to study (i) how forest structure and composition vary with disturbance gradients and (ii) whether tree diversity is promoted by niche differentiation related to wind-throw events at the landscape scale. In the forest area affected by the blowdown, tree mortality ranged from 0 to 70%, and was highest on plateaus and slopes. Less impacted areas in the region affected by the blowdown had overlapping characteristics with a nearby unaffected forest in tree density (583±46 trees ha−1) (mean±99% Confidence Interval) and basal area (26.7±2.4 m2 ha−1). Highly impacted areas had tree density and basal area as low as 120 trees ha−1 and 14.9 m2 ha−1, respectively. In general, these structural measures correlated negatively with an index of tree mortality intensity derived from satellite imagery. Four years after the blowdown event, differences in size-distribution, fraction of resprouters, floristic composition and species diversity still correlated with disturbance measures such as tree mortality and gap size. Our results suggest that the gradients of wind disturbance intensity encompassed in large blowdown gaps (>2000 m2) promote tree diversity. Specialists for particular disturbance intensities existed along the entire gradient. The existence of species or genera taking an intermediate position between undisturbed and gap specialists led to a peak of rarefied richness and diversity at intermediate disturbance levels. A diverse set of species differing widely in requirements and recruitment strategies forms the initial post-disturbance cohort, thus lending a high resilience towards wind disturbances at the

Canopy gaps created by wind-throw events, or blowdowns, create a complex mosaic of forest patches varying in disturbance intensity and recovery in the Central Amazon. Using field and remote sensing data, we investigated the short-term (four-year) effects of large (>2000 m(2)) blowdown gaps created during a single storm event in January 2005 near Manaus, Brazil, to study (i) how forest structure and composition vary with disturbance gradients and (ii) whether tree diversity is promoted by niche differentiation related to wind-throw events at the landscape scale. In the forest area affected by the blowdown, tree mortality ranged from 0 to 70%, and was highest on plateaus and slopes. Less impacted areas in the region affected by the blowdown had overlapping characteristics with a nearby unaffected forest in tree density (583 ± 46 trees ha(-1)) (mean ± 99% Confidence Interval) and basal area (26.7 ± 2.4 m(2) ha(-1)). Highly impacted areas had tree density and basal area as low as 120 trees ha(-1) and 14.9 m(2) ha(-1), respectively. In general, these structural measures correlated negatively with an index of tree mortality intensity derived from satellite imagery. Four years after the blowdown event, differences in size-distribution, fraction of resprouters, floristic composition and species diversity still correlated with disturbance measures such as tree mortality and gap size. Our results suggest that the gradients of wind disturbance intensity encompassed in large blowdown gaps (>2000 m(2)) promote tree diversity. Specialists for particular disturbance intensities existed along the entire gradient. The existence of species or genera taking an intermediate position between undisturbed and gap specialists led to a peak of rarefied richness and diversity at intermediate disturbance levels. A diverse set of species differing widely in requirements and recruitment strategies forms the initial post-disturbance cohort, thus lending a high resilience towards wind

New roads, agricultural projects, logging, and mining are claiming an ever greater area of once-pristine Amazonian forest. The Millennium Ecosystems Assessment (MA) forecasts the extinction of a large fraction of Amazonian tree species based on projected loss of forest cover over the next several decades. How accurate are these estimates of extinction rates? We use neutral theory to estimate the number, relative abundance, and range size of tree species in the Amazon metacommunity and estimate likely tree-species extinctions under published optimistic and nonoptimistic Amazon scenarios. We estimate that the Brazilian portion of the Amazon Basin has (or had) 11,210 tree species that reach sizes >10 cm DBH (stem diameter at breast height). Of these, 3,248 species have population sizes >1 million individuals, and, ignoring possible climate-change effects, almost all of these common species persist under both optimistic and nonoptimistic scenarios. At the rare end of the abundance spectrum, however, neutral theory predicts the existence of approximately 5,308 species with <10,000 individuals each that are expected to suffer nearly a 50% extinction rate under the nonoptimistic deforestation scenario and an approximately 37% loss rate even under the optimistic scenario. Most of these species have small range sizes and are highly vulnerable to local habitat loss. In ensembles of 100 stochastic simulations, we found mean total extinction rates of 20% and 33% of tree species in the Brazilian Amazon under the optimistic and nonoptimistic scenarios, respectively. PMID:18695228

We studied the tree-regeneration patterns in three distinct agricultural settlements in the Eastern Amazon to test the influence of land-use mosaics. The following questions are addressed: are the floristic structure and composition of regenerating trees affected by the various land-use types applied in the agricultural settlements? Do tree-regeneration patterns respond similarly to distinct land-use mosaics? Is there a relationship between tree regeneration and soil characteristics among the land-use types? The regeneration was inventoried at 45 sampling points in each settlement. At each sampling point, fourteen soil variables were analyzed. Nine different land-use types were considered. The floristic structure and composition of the settlements showed differences in the density of individuals and species and high species heterogeneity among the land-use types. The maximum Jaccard similarity coefficient found between land-use types was only 29%. Shade-tolerant species were the most diverse functional group in most land-use types, including pasture and annual crops, ranging from 91% of the number of species in the conserved and exploited forests of Travessão 338-S to 53% in the invaded pastures of Maçaranduba. The land-use types influenced significantly the floristic structure and composition of regenerating trees in two agricultural settlements, but not in third the settlement, which had greater forest cover. This finding demonstrates that the composition of each land-use mosaic, established by different management approaches, affects regeneration patterns. Tree regeneration was related to soil characteristics in all mosaics. Preparation of the area by burning was most likely the determining factor in the differences in soil characteristics between forests and agricultural areas. PMID:25948152

We studied the tree-regeneration patterns in three distinct agricultural settlements in the Eastern Amazon to test the influence of land-use mosaics. The following questions are addressed: are the floristic structure and composition of regenerating trees affected by the various land-use types applied in the agricultural settlements? Do tree-regeneration patterns respond similarly to distinct land-use mosaics? Is there a relationship between tree regeneration and soil characteristics among the land-use types? The regeneration was inventoried at 45 sampling points in each settlement. At each sampling point, fourteen soil variables were analyzed. Nine different land-use types were considered. The floristic structure and composition of the settlements showed differences in the density of individuals and species and high species heterogeneity among the land-use types. The maximum Jaccard similarity coefficient found between land-use types was only 29 %. Shade-tolerant species were the most diverse functional group in most land-use types, including pasture and annual crops, ranging from 91 % of the number of species in the conserved and exploited forests of Travessão 338-S to 53 % in the invaded pastures of Maçaranduba. The land-use types influenced significantly the floristic structure and composition of regenerating trees in two agricultural settlements, but not in third the settlement, which had greater forest cover. This finding demonstrates that the composition of each land-use mosaic, established by different management approaches, affects regeneration patterns. Tree regeneration was related to soil characteristics in all mosaics. Preparation of the area by burning was most likely the determining factor in the differences in soil characteristics between forests and agricultural areas.

In the Amazon basin the destruction of old growth forests has meant, for the most part, the expansion of pastures for livestock and destruction of a global carbon sink. As these pastures have grown in extent and age, questions about what happens to the biodiversity and carbon sequestration in these pastoral landscapes has assumed more importance. In the research reported here, we offer a preliminary answer to these questions. Our study focuses on the southern Ecuadorian Amazon, where there have recently been trends of spontaneous silvo-pastoral landscapes. These landscapes are a result of land managers allowing trees to grow in cattle pastures, potentially leading to seed sources for native species regeneration and carbon sequestration. This paper discusses demographic, economic and cultural shifts, potentially in light of the expansion of urban areas and off-farm employment, which could impact pasture management in Morona Santiago, Ecuador. Tree cover in pastures is modeled against household demographic, economic and environmental variables that demonstrate which variables affect tree cover in managed landscapes. This analysis sheds light into current processes affecting pasture management in the Amazon, and in turn important landscape outcomes such as dual management systems that include pastures and tree regeneration.

Forest biophysical structure - the arrangement and frequency of leaves and stems - emerges from growth, mortality and space filling dynamics, and may also influence those dynamics by structuring light environments. To investigate this interaction, we developed models that could use LiDAR remote sensing to link leaf area profiles with tree size distributions, comparing models which did not (metabolic scaling theory) and did allow light to influence this link. We found that a light environment-to-structure link was necessary to accurately simulate tree size distributions and canopy structure in two contrasting Amazon forests. Partitioning leaf area profiles into size-class components, we found that demographic rates were related to variation in light absorption, with mortality increasing relative to growth in higher light, consistent with a light environment feedback to size distributions. Combining LiDAR with models linking forest structure and demography offers a high-throughput approach to advance theory and investigate climate-relevant tropical forest change. PMID:25963522

Synthesis studies of old-growth tropical forest plot networks indicate a pantropical net carbon sink of more than 1 Pg C/yr. However a number of confounding factors limit our ability to attribute these changes to direct CO2 fertilization of tree growth and forest productivity. Of primary importance is determining if the plots adequately sample natural disturbance and recovery gradients, and the larger landscape successional mosaic. In addition, forest biomass dynamics which include tree growth, recruitment and mortality can interact in complex ways with changes in forest productivity and biomass accumulation. This study represents a novel approach to determine the sensitivity of different sampling strategies for detecting tropical forest CO2 fertilization while accounting for these confounding factors. Our approach, developed for Amazon forests in Brazil and Peru, combines extensive field plot data on biomass dynamics, remote sensing analyses to generate disturbance probability distribution functions, and individual-based simulation modeling for placing plot-level results into a landscape context. Results indicate that forest plots significantly larger than 10 ha are required to maximize the signal-to-noise ratio for detecting CO2 fertilization. We also present a field sampling strategy for quantifying site-to-site differences in forest biomass accumulation rates, which is useful for detecting regional differences in tropical forest sensitivity to rising atmospheric CO2 concentration. Overall, this approach is useful in developing field campaigns that explicitly account for landscape heterogeneity in testing key predictions of Earth system models.

Advanced recruitment and neutral processes play important roles in determining tree species composition in tropical forest canopy gaps, with few gaps experiencing clear secondary successional processes. However, most studies are limited to the relatively limited spatial scales provided by forest inventory plots, and investigations over the entire range of gap size are needed to better understand how ecological processes vary with tree mortality events. This study employed a landscape approach to test the hypothesis that tree species composition and forest structural attributes differ between large blowdown gaps and relatively undisturbed primary forest. Spectral mixture analysis on hyperspectral satellite imagery was employed to direct field sampling to widely distributed sites, and blowdown plots were compared with undisturbed primary forest plots. Tree species composition and forest structural attributes differed markedly between gap and non-gap sites, providing evidence of niche partitioning in response to disturbance across the region. Large gaps were dominated by classic Neotropical pioneer genera such as Cecropia and Vismia, and average tree size was significantly smaller. Mean wood density of trees recovering in large gaps (0.55 g cm(-3)) was significantly lower than in primary forest plots (0.71 g cm(-3)), a difference similar to that found when comparing less dynamic (i.e., tree recruitment, growth, and mortality) Central Amazon forests with more dynamic Western Amazon forests. Based on results, we hypothesize that the importance of neutral processes weaken, and niche processes strengthen, in determining community assembly along a gradient in gap size and tree mortality intensity. Over evolutionary time scales, pervasive dispersal among colonizers could result in the loss of tree diversity in the pioneer guild through competitive exclusion. Results also underscore the importance of considering disturbance processes across the landscape when addressing

In the past decade, two extreme droughts experienced by the Amazon rainforest led to a perturbation of carbon cycle dynamics and forest structure, partly through an increase in tree mortality. While there is a relatively strong consensus in CMIP5 projections for an increase in both frequency and intensity of droughts across the Amazon, the potential for forest die-off constitutes a large uncertainty in projections of climate impacts on terrestrial ecosystems and carbon cycle feedbacks. Two long-term through fall exclusion experiments (TFE) provided novel observations of Amazonian ecosystem responses under drought. These experiments also provided a great opportunity to evaluate and improve models' behavior under drought by comparing simulations and observations. While current DGVM use a wide array of algorithms to represent mortality, most are associated with large uncertainty for representing drought-induced mortality, and require updating to include current information of physiological processes. During very strong droughts, the leaves desiccate and stems may undergo catastrophic embolism. However, even before that point, stomata close, to minimize excessive water loss and risk of hydraulic failure, which reduces carbon assimilation. To maintain respiration and other functions, plants may eventually deplete stored non-structural carbon compounds (NSC), which may have negative impacts on plant and eventually increase the probability of mortality.Here, we describe a new parameterization of the mortality process induced by drought using the ORCHIDEE-CAN dynamic vegetation model and test it using the two TFE results. We first updated and evaluated both the representation of hydraulic architecture and the NSC pool dynamics using in situ data. We implemented a direct climate effect on mortality through catastrophic stem embolism, based on hydraulic vulnerability curves. In addition, we explored the role of NSC on hydraulic failure and mortality by coupling in the model

Canopy chemistry and spectroscopy offer insight into community assembly and ecosystem processes in high-diversity tropical forests. Results from one lowland site in the Peruvian Amazon suggests both an environmental and an evolutionary component of canopy trait development however, the degree to which larger environmental differences influence diversity in canopy traits and their respective spectroscopic signatures across remains poorly understood. The spectranomics approach explicitly connects phylogenetic, chemical and spectral patterns in tropical canopies providing the basis for analysis, while high-fidelity, airborne remote sensing measurements extend plot-level data to landscape-scale, achieving a comprehensive view of the region. In 2011, the Carnegie Airborne Observatory (CAO) was used to sample a large region of the Western Amazon Basin in southeastern Peru, extending from lowlands to tree line in the Andean mountains. The CAO Visible-Shortwave Imaging Spectrometer (VSWIR) collected 480-band high-fidelity imaging spectroscopy data of the forest canopy, while its high-resolution LiDAR captured information on canopy structure and the underlying terrain. The data were used to quantify relationships between environmental gradients and canopy chemical and spectral diversity. Results suggest strong environmental control with additional phylogenetic influence over canopy spectral and chemical properties, particularly those related to structure, defense and metabolic function. Data from CAO-VSWIR extends the large range in canopy chemical and spectral diversity related to environmental factors across the Western Amazon Basin.

Native fruiting plants are widely cultivated in the Amazon but only little information on their water use characteristics can be found in the literature. Due to the growing local consumption and the increasing popularity for new "exotic" fruits all over Brazil and worldwide, additional new plantations cultivating such fruit-bearing species might be established in the Amazon in the future. These new plantations will affect the water table of the cultivated areas, however, the impact of these changes on the regional hydrology are not known. We, therefore, decided to study plant water use characteristics of two native fruit plants commonly occurring in the Amazon region, a tree species (Cupuaçu, Theobroma grandiflorum, (Willd. ex Spreng.) Schum., Malvaceae) and a palm species (Açai, Euterpe oleraceae Mart., Arecaceae). This study was conducted in a fruit plantation close to the city of Manaus, in the Central Amazon, Brazil. The objectives of our study were 1) to compare variables controlling plant water use and 2) to identify differences in water use between woody monocot and dicot plant species. We chose three representative individuals with well-sun-exposed crowns for each species, which were equipped with Granier-type thermal dissipation probes to measure sap flux density continuously for six weeks from August 1st 2011 until September 6th 2011. We used a simple sap flux model with two environmental variables, photosynthetic photon flux density and vapor pressure deficit, to compare sap flux densities between species. We achieved a good model fit and modeled sap flux densities corresponded very well with the actual measured values. No significant differences among species in sap flux densities were indicated by the model. Overall, palms had a 3.5 fold higher water consumption compared to trees with similar diameter. Water use scaled independent from species with the size of the conductive xylem area (r2 = 0.85), so that the higher water use of the palms was

Boa constrictor is often referred to as a sit-and-wait or ambush forager that chooses locations to maximize the likelihood of prey encounters (Greene 1983. In Janzen [ed.], Costa Rica Natural History, pp. 380-382. Univ. Chicago Press, Illinois). However, as more is learned about the natural history of snakes in general, the dichotomy between active versus ambush foraging is becoming blurred. Herein, we describe an instance of diurnal active foraging by a B. constrictor, illustrating that this species exhibits a range of foraging behaviors.

Plant scaling models use measurements of architecture (i.e., length, width, and order of branch or xylem segments) to ultimately predict whole-plant metabolism via mass and water-use allometries. The application of plant scaling models is broad, and holds potential to simplify forest modelling efforts. However little is known regarding the influence of the environment (e.g., temperature, light, etc) on variation in branching architecture traits and how this variation affects scaling. Furthermore, scaling model assumptions of a self-similar and symmetric branching network have not been extensively tested, especially in tropical forests. As such, it is still unclear to what extent tree communities can be approximated by simple geometrical models, and where important functional divergences from theory exist. Here we analyse novel tree architecture data from diverse species along a 4000m elevational gradient spanning the Andes to the Amazon in Peru. Specifically, we calculate and compare inter- and intra-specific scaling exponents related to branch segment length and width within a hierarchical Bayesian framework. Preliminary results indicate that branching architecture significantly varies among and within species especially with respect to light environments. As such, we explore the role of light in driving tree geometry by also analysing differences in light environment and crown shape. Then, we attempt to link branch architecture and crown shape. Using 6 branch-level and whole-tree traits (path length fraction, crown depth, crown width, crown volume, crown depth/width and crown width/depth) we are able to cluster 68 species of trees into 6 unique groups related to architecture and explain ~60% variability in these data. In the future, it will be important to relate these architectural groups to variation in leaf-level traits and physiology. Lastly, we discuss the implications of using these results to understand tropical forest responses to environmental change.

We present a unique proxy for the reconstruction of variation in precipitation over the Amazon: oxygen isotope ratios in annual rings in tropical cedar (Cedrela odorata). A century-long record from northern Bolivia shows that tree rings preserve the signal of oxygen isotopes in precipitation during the wet season, with weaker influences of temperature and vapor pressure. Tree ring δ(18)O correlates strongly with δ(18)O in precipitation from distant stations in the center and west of the basin, and with Andean ice core δ(18)O showing that the signal is coherent over large areas. The signal correlates most strongly with basin-wide precipitation and Amazon river discharge. We attribute the strength of this (negative) correlation mainly to the cumulative rainout processes of oxygen isotopes (Rayleigh distillation) in air parcels during westward transport across the basin. We further find a clear signature of the El Niño-Southern Oscillation (ENSO) in the record, with strong ENSO influences over recent decades, but weaker influence from 1925 to 1975 indicating decadal scale variation in the controls on the hydrological cycle. The record exhibits a significant increase in δ(18)O over the 20th century consistent with increases in Andean δ(18)O ice core and lake records, which we tentatively attribute to increased water vapor transport into the basin. Taking these data together, our record reveals a fresh path to diagnose and improve our understanding of variation and trends of the hydrological cycle of the world's largest river catchment. PMID:23027960

Severe drought episodes such as those associated with El Niño Southern Oscillation (ENSO) events influence large areas of tropical forest and may become more frequent in the future. One of the most important forest responses to severe drought is tree mortality, which alters forest structure, composition, carbon content, and flammability, and which varies widely. This study tests the hypothesis that tree mortality increases abruptly during drought episodes when plant-available soil water (PAW) declines below a critical minimum threshold. It also examines the effect of tree size, plant life form (palm, liana, tree) and potential canopy position (understory, midcanopy, overstory) on drought-induced plant mortality. A severe, four-year drought episode was simulated by excluding 60% of incoming throughfall during each wet season using plastic panels installed in the understory of a 1-ha forest treatment plot, while a 1-ha control plot received normal rainfall. After 3.2 years, the treatment resulted in a 38% increase in mortality rates across all stems >2 cm dbh. Mortality rates increased 4.5-fold among large trees (>30 cm dbh) and twofold among medium trees (10-30 cm dbh) in response to the treatment, whereas the smallest stems were less responsive. Recruitment rates did not compensate for the elevated mortality of larger-diameter stems in the treatment plot. Overall, lianas proved more susceptible to drought-induced mortality than trees or palms, and potential overstory tree species were more vulnerable than midcanopy and understory species. Large stems contributed to 90% of the pretreatment live aboveground biomass in both plots. Large-tree mortality resulting from the treatment generated 3.4 times more dead biomass than the control plot. The dramatic mortality response suggests significant, adverse impacts on the global carbon cycle if climatic changes follow current trends. PMID:17918404

Respiration in tree stems strongly controls the tree carbon use efficiency. The rate of CO2 efflux from the stem has often been assumed to be a measure of stem respiration. However, recent work has demonstrated that stem CO2 efflux can either overestimate or underestimate respiration rate, because of emission or removal of CO2 by transport in xylem water. Here, we have used high precision measurements of O2 to estimate the ratio between local stem respiration and local CO2 efflux, in tropical forest trees. This approach is based on the much lower solubility of O2 in water relatively to CO2. The measured ratios between the stems CO2 efflux and O2 influx indicated that a large portion of the respired CO2 (~35% on average) is not emitted locally, and is probably transported upward in the stem. Our results indicate the existence of a considerable internal flux of CO2 in the stem. If the transported CO2 is used in the canopy as a substrate for photosynthesis, it could account for several percent of the carbon fixed by the tree, and perhaps serve as a mechanism that buffers the response of the tree to changing CO2 levels or to drought stress. We have also demonstrated that measurements of O2 uptake, while are more difficult to make, can be a more appropriate method to estimate stem respiration rates.

Researchers have argued that indigenous peoples preferably use the most apparent plant species, particularly for medicinal uses. However, the association between the ecological importance of a species and its usefulness remains unclear. In this paper we quantify such association for six use categories (firewood, construction, materials, food, medicines and other uses). We collected data on the uses of 58 tree species, as reported by 93 informants in 22 villages in the Tsimane’ territory (Bolivian Amazon). We calculated the ecological importance of the same species by deriving their importance value index (IVI) in 48 0.1-ha old-growth forest plots. Matching both data sets, we found a positive relation between the IVI of a species and its overall use value (UV) as well as with its UV for construction and materials. We found a negative relation between IVI and UV for species that were reportedly used for medicine and food uses, and no clear pattern for the other categories. We hypothesize that species used for construction or crafting purposes because of their physical properties are more easily substitutable than species used for medicinal or edible purposes because of their chemical properties. PMID:26097243

Respiration in tree stems is an important component of forest carbon balance. The rate of CO2 efflux from the stem has often been assumed to be a measure of stem respiration. However, recent work in temperate forests has demonstrated that stem CO2 efflux can either overestimate or underestimate respiration rate because of emission or removal of CO2 by transport in xylem water. Here, we studied gas exchange from stems of tropical forest trees using a new approach to better understand respiration in an ecosystem that plays a key role in the global carbon cycle. Our main questions were (1) is internal CO2 transport important in tropical trees, and, if so, (2) does this transport result in net release of CO2 respired in the roots at the stem, or does it cause the opposite effect of net removal of stem-respired CO2? To answer these questions, we measured the ratio of stem CO2 efflux to O2 influx. This ratio, defined here as apparent respiratory quotient (ARQ), is expected to equal 1.0 if carbohydrates are the substrate for respiration, and the net transport of CO2 in the xylem water is negligible. Using a stem chamber approach to quantifying ARQ, we found values of 0.66 ± 0.18. These low ARQ values indicate that a large portion of respired CO2 (~ 35%) is not emitted locally, and is probably transported upward in the stem. ARQ values of 0.21 ± 0.10 were found for the steady-state gas concentration within the stem, sampled by in-stem equilibration probes. These lower values may result from the proximity to the xylem water stream. In contrast, we found ARQ values of 1.00 ± 0.13 for soil respiration. Our results indicate the existence of a considerable internal flux of CO2 in the stems of tropical trees. If the transported CO2 is used in the canopy as a substrate for photosynthesis, it could account for up to 10% of the C fixed by the tree, and perhaps serve as a mechanism that buffers the response of the tree to changing CO2 levels. Our results also indicate, in

Respiration in tree stems is an important component of forest carbon balance. The rate of CO2 efflux from the stem has often been assumed to be a measure of stem respiration. However, recent work in temperate forests has demonstrated that stem CO2 efflux can either overestimate or underestimate respiration rate, because of emission or removal of CO2 by transport in xylem water. Here we used the ratio between CO2 efflux and O2 influx in stems of tropical forest trees to better understand respiration in an ecosystem that plays a key role in the global carbon cycle. This ratio, which we defined here as apparent respiratory quotient (ARQ), is expected to equal 1.0 if carbohydrates are the substrate for respiration, and the net transport of CO2 in the xylem water is negligible. However, using a stem chamber approach to quantifying ARQ we found values of 0.66 ± 0.18. These low ARQ values indicate that a large portion of respired CO2 (~35%) is not emitted locally, and is probably transported upward in the stem. ARQ values of 0.21 ± 0.10 were found for the steady-state gas concentration within the tree, sampled by in-stem equilibration probes. These lower values may result from the proximity to the xylem water stream. In contrast, we found ARQ values of 1.00 ± 0.13 for soil respiration. Our results indicate, for the first time, the existence of a~considerable internal flux of CO2in the stem of tropical trees. If the transported CO2 is used in the canopy as a substrate for photosynthesis, it could account for several percent of the C fixed by the tree, and perhaps serve as a mechanism that buffers the response of the tree to changing CO2 levels. Our results also indicate, in agreement with previous work, that the widely used CO2 efflux approach for determining stem respiration is unreliable. We demonstrate here a field applicable approach for measuring the O2 uptake rate, which we suggest to be a more appropriate method to estimate stem respiration rates.

Plant leaf waxes are well known biomarkers for terrestrial vegetation. Generally, their hydrogen isotopic composition (D/H) records the isotopic composition of precipitation, modulated by leaf water processes and a large biosynthetic fractionation. In addition, the D/H of methoxyl groups on tree wood lignin is an emerging technique thought to record the D/H of source waters, without leaf water complications. Using each of these biomarkers as proxies requires understanding D/H fractionations in plant systems, but few studies have directly studied hydrogen isotope biogeochemistry in tropical plants. An approach that has proven helpful is the paired analysis of plant waters and plant biomarkers: in order that fractionations can be directly computed rather than assumed. This presents logistical challenges in remote tropical forest environments. We report on a unique dataset collected by tree-climbers from 6 well-studied vegetation plots across a 4km elevation transect in the Peruvian Andes and Amazonia. We have measured the D/H of stem water and leaf water, and we compare these to precipitation isotopes and stream waters. The goal of the plant water studies is to understand plant water uptake and stem-leaf water isotopic offsets which can vary due to both transpiration and foliar uptake of water in tropical montane forests. We are in the process of measuring the D/H of plant biomarkers (n-alkanoic acids, n-alkanes and lignin methoxyl) in order to assess how these water isotopic signals are encoded in plant biomarkers. We compare the species-specific modern plant insights to the plant leaf wax n-alkanoic acid D/H that we have recently reported from soils and river sediments from the same region, in order to understand how signals of plant biogeochemistry are integrated into geological sedimentary archives. Progress and open questions in tropical isotope biogeochemistry will be discussed at the meeting.

We present a unique proxy for the reconstruction of variation in precipitation over the Amazon: oxygen isotope ratios in annual rings in tropical cedar (Cedrela odorata). A century-long record from northern Bolivia shows that tree rings preserve the signal of oxygen isotopes in precipitation during the wet season, with weaker influences of temperature and vapor pressure. Tree ring δ18O correlates strongly with δ18O in precipitation from distant stations in the center and west of the basin, and with Andean ice core δ18O showing that the signal is coherent over large areas. The signal correlates most strongly with basin-wide precipitation and Amazon river discharge. We attribute the strength of this (negative) correlation mainly to the cumulative rainout processes of oxygen isotopes (Rayleigh distillation) in air parcels during westward transport across the basin. We further find a clear signature of the El Niño-Southern Oscillation (ENSO) in the record, with strong ENSO influences over recent decades, but weaker influence from 1925 to 1975 indicating decadal scale variation in the controls on the hydrological cycle. The record exhibits a significant increase in δ18O over the 20th century consistent with increases in Andean δ18O ice core and lake records, which we tentatively attribute to increased water vapor transport into the basin. Taking these data together, our record reveals a fresh path to diagnose and improve our understanding of variation and trends of the hydrological cycle of the world's largest river catchment.

This paper presents a new reading of Franz Boas's philosophy of science and his approach to the understanding of culture and behavior. It points out that his approach had important parallels with the worldview of the major figures associated with pragmatism and suggests that a similar perspective can be useful today. PMID:14992220

Among the states that comprise the legally defined Amazon region of Brazil, Pará has presented the highest occurrences of acute cases of Chagas disease over the last two decades. These cases have been attributed to consumption of fruits from native palm trees. In surveys in rural and wild areas of the municipality of Oriximiná, Pará, triatomine fauna, their main ecotopes and the infection rate due to Trypanosoma cruzi were identified using active and passive search methods: manual capture and Noireau traps, respectively. A total of 582 ecotopes were surveyed using 1496 Noireau traps. Out of 442 specimens collected, 289 were identified as Rhodnius robustus and 153 as Rhodnius pictipes. The infection rate caused by T. cruzi was 17.4%. The food sources of the triatomines were found to be birds, hemolymph, horses, and rodents. The association between R. robustus and inajá palm trees (Attalea marita), which are abundant in rural areas, was confirmed. On the other hand, R. pictipes is found in several palm tree species, such as inajá (A. marita), mucajá (Acrocomia aculeata), murumuru (Astrocaryum murumuru) and patauá (Oenocarpus bataua), and in bromeliads in wild areas. These occurrences of triatomine species in regions with or without T. cruzi infection, in the vicinity of the main settlement of the municipality, suggest that there is a need for entomological and epidemiological surveillance in this region. PMID:22664419

We present a unique proxy for the reconstruction of variation in precipitation over the Amazon: oxygen isotope ratios in annual rings in tropical cedar (Cedrela odorata). A century-long record from northern Bolivia shows that tree rings preserve the signal of oxygen isotopes in precipitation during the wet season, with weaker influences of temperature and vapor pressure. Tree ring δ18O correlates strongly with δ18O in precipitation from distant stations in the center and west of the basin, and with Andean ice core δ18O showing that the signal is coherent over large areas. The signal correlates most strongly with basin-wide precipitation and Amazon river discharge. We attribute the strength of this (negative) correlation mainly to the cumulative rainout processes of oxygen isotopes (Rayleigh distillation) in air parcels during westward transport across the basin. We further find a clear signature of the El Niño-Southern Oscillation (ENSO) in the record, with strong ENSO influences over recent decades, but weaker influence from 1925 to 1975 indicating decadal scale variation in the controls on the hydrological cycle. The record exhibits a significant increase in δ18O over the 20th century consistent with increases in Andean δ18O ice core and lake records, which we tentatively attribute to increased water vapor transport into the basin. Taking these data together, our record reveals a fresh path to diagnose and improve our understanding of variation and trends of the hydrological cycle of the world’s largest river catchment. PMID:23027960

Ismar Boas is revered as one of the pioneers of modern gastroenterology. 75 years after his suicide due to Nazism it is appropriate to remember the great clinician and scientist. Moreover in a newly detected report from his hands some information on his thinking and handling of medical problems can be derived and his view of medial progress until today can be assessed. PMID:23585267

Snakes of the subfamily Boinae are found in Madagascar, the Papuan-Pacific Islands, and the Neotropics. It has been suggested that genera within each of these particular areas do not form monophyletic groups. Further, it was proposed that the New World Boa constrictor is more closely related to boine genera in Madagascar than to boines in the Neotropics. Along with inferring the relationship of all boine genera using data from the cytochrome b gene and morphology, the placement of Boa was also examined. Phylogenetic inferences using maximum likelihood and Bayesian (BI) methods for combined data analyses and separate analyses of DNA sequence and morphological data were conducted. Priors, parametric bootstraps, and the Shimodaira-Hasegawa test were used to examine the previously proposed placement of Boa with Madagascan taxa using these DNA data. DNA data and combined data analyses strongly reject the hypothesis that Boa is more closely related to Old World genera than to other New World genera. Additionally, strong tree support suggests that all species within Madagascar, the Papuan-Pacific Islands, and the Neotropics each form a monophyletic group with respect to their geographic region. PMID:15579390

In Amazon secondary forests are dominated by pioneer species that typically produce large amounts of small and dormant seeds that are able to form a persistent soil seed bank. Seed dormancy in this group of species is overcome by environmental conditions found in open areas, such as high irradiation or alternating temperatures. Nevertheless, a variety of germination responses to environmental factors is known among pioneers; some of them may germinate in diffuse light or in darkness condition at constant temperature. Seed mass can be considered as one of the factors that promotes this variety. Regarding species with very small seeds, it seems that the trigger for germination is light and for larger seeds temperature alternation may be a more important stimulus. In this study we established a relationship between seed mass and germination response to light and alternating temperature for a group of seven woody pioneer species from the Amazon forest. We found that an increase in seed mass was followed by a decrease in the need for light and an increase in the tolerance to alternating temperatures. Understanding germination strategies may contribute with the knowledge of species coexistence in high diverse environments and also may assist those involved in forest management and restoration. PMID:22886162

Understanding how indigenous peoples’ management practices relate to biological diversity requires addressing contemporary changes in indigenous peoples’ way of life. This study explores the association between cultural change among a Bolivian Amazonian indigenous group, the Tsimane’, and tree diversity in forests surrounding their villages. We interviewed 86 informants in six villages about their level of attachment to traditional Tsimane’ values, our proxy for cultural change. We estimated tree diversity (Fisher’s Alpha index) by inventorying trees in 48 0.1-ha plots in old-growth forests distributed in the territory of the same villages. We used multivariate models to assess the relation between cultural change and alpha tree diversity. Cultural change was associated with alpha tree diversity and the relation showed an inverted U-shape, thus suggesting that tree alpha diversity peaked in villages undergoing intermediate cultural change. Although the results do not allow for testing the direction of the relation, we propose that cultural change relates to tree diversity through the changes in practices and behaviors that affect the traditional ecological knowledge of Tsimane’ communities; further research is needed to determine the causality. Our results also find support in the intermediate disturbance hypothesis, and suggest that indigenous management can be seen as an intermediate form of anthropogenic disturbance affecting forest communities in a subtle, non-destructive way. PMID:26097240

In Amazonian non-flooded forests with a moderate dry season, many trees do not form anatomically definite annual rings. Alternative indicators of annual rings, such as the oxygen (δ(18)Owc) and carbon stable isotope ratios of wood cellulose (δ(13)Cwc), have been proposed; however, their applicability in Amazonian forests remains unclear. We examined seasonal variations in the δ(18)Owc and δ(13)Cwc of three common species (Eschweilera coriacea, Iryanthera coriacea, and Protium hebetatum) in Manaus, Brazil (Central Amazon). E. coriacea was also sampled in two other regions to determine the synchronicity of the isotopic signals among different regions. The annual cyclicity of δ(18)Owc variation was cross-checked by (14)C dating. The δ(18)Owc showed distinct seasonal variations that matched the amplitude observed in the δ(18)O of precipitation, whereas seasonal δ(13)Cwc variations were less distinct in most cases. The δ(18)Owc variation patterns were similar within and between some individual trees in Manaus. However, the δ(18)Owc patterns of E. coriacea differed by region. The ages of some samples estimated from the δ(18)Owc cycles were offset from the ages estimated by (14)C dating. In the case of E. coriacea, this phenomenon suggested that missing or wedging rings may occur frequently even in well-grown individuals. Successful cross-dating may be facilitated by establishing δ(18)Owc master chronologies at both seasonal and inter-annual scales for tree species with distinct annual rings in each region. PMID:26621690

article title: Mouth of the Amazon River View Larger Image ... over 6450 kilometers eastward across Brazil, the Amazon River originates in the Peruvian Andes as tiny mountain streams that eventually ...

A trophic network involving molds, invertebrates, and vertebrates, ancestrally adapted to the palm tree (Attalaea phalerata) microhabitat, maintains enzootic Trypanosoma cruzi infections in the Amazonian county Paço do Lumiar, state of Maranhão, Brazil. We assessed seropositivity for T. cruzi infections in the human population of the county, searched in palm trees for the triatomines that harbor these infections, and gathered demographic, environmental, and socioeconomic data. Rhodnius pictipes and R. neglectus in palm-tree frond clefts or in houses were infected with T. cruzi (57% and 41%, respectively). Human blood was found in 6.8% of R. pictipes in houses, and 9 of 10 wild Didelphis marsupialis had virulent T. cruzi infections. Increasing human population density, rain forest deforestation, and human predation of local fauna are risk factors for human T. cruzi infections. PMID:11266300

In many dynamic vegetation models, degradation of the tropical forests is induced because they assume that productivity falls rapidly when temperatures rise in the region of 30-40°C. Apart plant respiration, this is due to the assumptions on the temperature optima of photosynthetic capacity, which are low and can differ widely between models, where in fact hardly any empirical information is available for tropical forests. Even less is known about the possibility that photosynthesis will acclimate to changing temperatures. The objective of this study to is to provide better estimates for optima, as well as to determine whether any acclimation to temperature change is to be expected. We present both new and hitherto unpublished data on the temperature response of photosynthesis of Amazon rainforest trees, encompassing three sites, several species and five field campaigns. Leaf photosynthesis and its parameters were determined at a range of temperatures. To study the long-term (seasonal) acclimation of this response, this was combined with an artificial, in situ, multi-season leaf heating experiment. The data show that, on average for all non-heated cases, the photosynthetic parameter Vcmax weakly peaks between 35 and 40 ˚C, while heating does not have a clearly significant effect. Results for Jmax are slightly different, with sharper peaks. Scatter was relatively high, which could indicate weak overall temperature dependence. The combined results were used to fit new parameters to the various temperature response curve functions in a range of DGVMs. The figure shows a typical example: while the default Jules model assumes a temperature optimum for Vcmax at around 33 ˚C, the data suggest that Vcmax keeps rising up to at least 40 ˚C. Of course, calculated photosynthesis, obtained by applying this Vcmax in the Farquhar model, peaks at lower temperature. Finally, the implication of these new model parameters for modelled climate change impact on modelled Amazon

This is a thematic lesson plan for young learners about palm trees and the importance of taking care of them. The two part lesson teaches listening, reading and speaking skills. The lesson includes parts of a tree; the modal auxiliary, can; dialogues and a role play activity.

The contributions to physical anthropology with which Franz Boas is usually credited are in the areas of growth, plasticity of head and body form, and biometric genetics. Such a listing of Boas's contributions overlooks the tremendous amount of research he did with biological variability of Native American populations. The rediscovery of his anthropometric data documents the tremendous investment in time, money, and effort Boas devoted to the topic and provides the opportunity to rediscover his insights into a subject that is of continuing interest. The design of his massive anthropometric survey of native North Americans reveals a concern for population analyses and a rejection of the typological framework of the time. If Boas's ideas had been adopted at the turn of the century, the development of physical anthropology in America might have been much different. PMID:7607632

Franz Boas was responsible for obtaining anthropometric data from approximately 27,000 subjects living around the turn-of-the-century. The subjects are of Native American, Siberian and European ancestry. These data have been entered into databases and are available for research. This paper describes the circumstances under which these data were collected and discusses their research potential. PMID:15463979

The Navy Prototype Optical Interferometer (NPOI) is nearing the completion of the first phase of construction at the Lowell Observatory on Anderson Mesa, AZ. The NPOI comprises two sub- arrays, the Big Optical Array (BOA) and the USNO Astrometric Interferometer (AI), which share delay lines, the optics laboratory, the control system, and parts of the feed optics. We describe the design of and progress on the BOA, the imaging component of the NPOI. The AI is described elsewhere (Hutter, these proceedings). As of the date of this symposium, most of the civil engineering is complete, including the control and laboratory buildings and the concrete piers for the initial array. Three AI siderostats and associated feed pipes, three delay lines, the initial three-way beam combiner, and much of the control system are in place. First fringes are anticipated in April. By the end of 1994, four AI and two BOA siderostats, as well as three more delay lines, will be installed, making imaging with all six siderostats possible. The complete BOA will consist of six 50 cm siderostats and 30 siderostat stations in a Y with 251 m arms, with baseline lengths from 4 m to 437 m. Nearly redundant baseline lengths will allow fringe tracking on long baselines on which the visibilities are too low for detection in real time. A six-way beam combiner (Mozurkewich, these proceedings) will allow simultaneous measurements of 15 visibilities and nine of 10 independent closure phases. The output beams will feed 32-channel spectrometers covering the range from 450 to 900 nm. We anticipate tracking fringes on stars brighter than 10(superscript m), imaging surfaces of stars brighter than 4(superscript m), measuring stellar diameters to 0.18 milliarcsec (mas), and measuring binary orbits with major axes as small as 0.4 mas.

An Argentine boa (Boa constrictor occidentalis) of 5 yr 7 mo of age was presented for respiratory problems and regurgitation. Radiographs revealed evidence of cardiomegaly and pneumonia. Blood smear examination revealed the presence of intracytoplasmic inclusion bodies in peripheral lymphocytes, consistent with inclusion body disease. Cultures of a tracheal wash sample resulted in growth of Ochrobactrum intermedium and Pseudomonas putida. Echocardiographic examination revealed a large vegetative lesion on the right atrioventricular valve with valvular insufficiency, a mildly dilated right atrium, and pulmonary hypertension. Postmortem examination confirmed the presence of pneumonia and bacterial endocarditis with dystrophic mineralization of the right atrioventricular valve, associated with different bacteria than those cultured from the tracheal wash. The present case is the first report of endocarditis in a boa constrictor and contributes to the rare reports of cardiac disease in snakes. PMID:25831585

The BOA system is a mobile pipe-external robotic crawler used to remotely strip and bag asbestos-containing lagging and insulation materials (ACLIM) from various diameter pipes in (primarily) industrial installations. Steam and process lines within the DOE weapons complex warrant the use of a remote device due to the high labor costs and high level of radioactive contamination, making manual removal extremely costly and highly inefficient. Currently targeted facilities for demonstration and remediation are Fernald in Ohio and Oak Ridge in Tennessee.

Background The rising number of acute cases of Chagas disease in the State of Pará, reported in the past two decades, has been associated, in part, with the ingestion of juice of local palm tree fruits, mainly açaí berry and bacaba. Near the study area, in Santarém, Pará State, an outbreak of Chagas disease has been notified and investigations suggest the consumption of bacaba juice as the main source of infection with T. cruzi. The purpose of this study is to assess the aspects associated to the ecology of Rhodnius robustus in palm trees of three communities of the Tapajós region, in the State of Pará, Brazil. Methods Palm trees were cut down and dissected to search for triatomines. DNA from triatomines was extracted to investigate natural infection by Trypanosoma cruzi and T. rangeli. For statistical analyzes, data from infestation of palm trees, as well as the rates of natural infection by T. cruzi and T. rangeli were compared by Chi-square test. Triatomine density values were analyzed by the nonparametric Kruskal Wallis test and then comparisons between each pair of variables were made by the Mann–Whitney test assuming a confidence interval of 95%. Results We dissected 136 palm trees, 60 at the end of the rainy period and 76 at the end of the dry period. Seventy-three of them (53.7%) were infested with triatomines and three species were found, namely: Rhodnius robustus, Rhodnius pictipes and Panstrongylus lignarius. We collected 743 triatomines, and R. robustus was predominant (n = 739). The identification of natural infection of the insects by trypanosomatids revealed that 125 triatomines were infected by T. cruzi, 69 by T. rangeli and 14 presented both parasites, indicating the presence of mixed infection in the same vector. Conclusion The results suggest that São Tomé is the community with greater density of triatomines and infestation of palm trees; also, it demonstrates the existence of an intense sylvatic cycle in the region, which demands

A 17-yr-old boa constrictor (Boa constrictor constrictor) presented initially with diffuse gingival swelling, loose teeth, and loss of body condition. Examination under anesthesia revealed two firm pink masses within the oral cavity. The largest mass was removed for biopsy. Histopathology and Melan-A-positive immunohistochemistry labeling confirmed a diagnosis of amelanotic melanoma. Secondary stomatitis was treated with antibiotics to improve quality of life, but the snake's condition deteriorated quickly over the next 2 mo. Euthanasia was elected and a gross postmortem examination was performed. Gross postmortem examination and histopathology results demonstrated that the neoplastic cells had spread in an unusual symmetrical pattern along all four dental arcades: the right and left sides of both the mandible and maxilla. Histopathology confirmed metastasis throughout the liver and spleen, despite the lack of gross lesions. PMID:26352976

A 15-yr-old female Madagascar ground boa (Boa madagascariensis) presented with a history of anorexia, wheezing, and occasional open-mouth breathing. On oral examination, a firm, caseous mass was noted in the right caudoventral pharyngeal region, which was confirmed as a carcinoma on incisional biopsy. Advanced imaging (computed tomography and magnetic resonance imaging) was performed to evaluate local tumor invasion and to plan for palliative radiation therapy. However, following the second treatment (10 Gy), the mass had increased in size, and the snake was euthanatized. Radiation-associated vasculitis was noted within the soft tissues surrounding the mass and within muscles and the lung, which was verified on histopathology. The squamous cell carcinoma of the snake in this report was resistant to palliative radiation therapy. PMID:23505715

This paper examines Franz Boas as an aspiring professional geographer during the 1880s: his Baffin Land research, his publications, his participation in geography organizations, and his struggle to attain a university appointment in geography. Frustrated by a seeming lack of opportunity for advancement in Germany, Boas explored career opportunities as a geographer in America and launched a series of unsuccessful but meaningful attempts to dominate the intellectual direction of American geography. Finally, the article reviews the circumstances surrounding Boas's appointment as an anthropologist at Clark University in 1889. Through examining Boas's own words and actions, the paper demonstrates that his professional identification with geography was lengthier and stronger than earlier accounts have suggested. It also critiques the myth of a Baffin Land "conversion" to anthropology, and delineates the circumstances of his shift from German human geography to his Americanist recasting of anthropology after 1889. PMID:14724914

The effects of body biometrics on cardiac measurements and description of cardiac anatomy were performed in red-tailed boas (Boa constrictor constrictor) (n = 29) using real-time B-mode ultrasonography. Statistical comparison of measured cardiac metrics according to sex and body measurements demonstrated no significant difference between sexes but a highly significant linear increase between body length and mass and all cardiac metrics. PMID:25314841

The objective of this work was to identify the cellular types present in inflammatory processes in the Brazilian snake, Boa constrictor constrictor. Blood smears were first made from three normal snakes and stained by several methods to identify the cell types present, thus facilitating the identification of cells in inflammatory processes induced in 16 further snakes by the subcutaneous implantation of cotton suture threads and circular coverslips. Implanted threads induced migration of heterophils and monocytes after 4 h, more intense monocyte migration after 24 h, an intense granulocytic migration inside and around the thread after 48 h, heterophilic granulocytes, macrophages and giant cells after 7 days, and giant cells with a typical granuloma response and persistence of heterophilic cells after 15, 69 and 117 days. The cell population attached to the implanted coverslips after 4 h was composed of heterophils, thrombocytes, erythrocytes and macrophages; after 24 and 48 h heterophils predominated, and after 7 days heterophils, macrophages and giant cells predominated. PMID:11578134

In 1912, Franz Boas published a study demonstrating the plastic nature of the human body in response to changes in the environment. The results of this study have been cited for the past 90 years as evidence of cranial plasticity. These findings, however, have never been critiqued thoroughly for their statistical and biological validity. This study presents a reassessment of Boas' data within a modern statistical and quantitative genetic framework. The data used here consist of head and face measurements on over 8,000 individuals of various European ethnic groups. By using pedigree information contained in Boas' data, narrow sense heritabilities are estimated by the method of maximum likelihood. In addition, a series of t tests and regression analyses are performed to determine the statistical validity of Boas' original findings on differentiation between American and European-born children and the prolonged effect of the environment on cranial form. Results indicate the relatively high genetic component of the head and face diameters despite the environmental differences during development. Results point to very small and insignificant differences between European- and American-born offspring, and no effect of exposure to the American environment on the cranial index in children. These results contradict Boas' original findings and demonstrate that they may no longer be used to support arguments of plasticity in cranial morphology. PMID:12374854

Benzoxazolin-2(3H)-one (BOA) is a well known allelochemical that is being explored for its herbicidal activity. However, not much is known about its effect on crop plants. The present study investigated the effect of BOA on germination and early growth of four vegetable crops viz. Pisum sativum L., Raphanus sativus L., Brassica oleracea L. var. botrytis and Brassica oleracea L. var. capitata. At 1000 microM, germination of P. sativum, R. sativus and B. oleracea var. botrytis was reduced by more than 50%, whereas that of B. oleracea var. capitata was completely suppressed. Further, BOA reduced the root and shoot length of the test plants by approximately 40-82% and approximately 55-85%, respectively. In general, the effect was more pronounced on the root (approximately 82% in B. oleracea var. botrytis) than on the shoot growth (approximately 73% B. oleracea var, botrytis). 2-Benzoxazolinone significantly enhanced the contents of proteins (by 6-28%) and carbohydrates (by 61-189%) in B. oleracea var. capitata and decreased the activities of related enzymes like proteases (by 13-36%), alpha-amylases (19-60%) and beta-amylase (25-70%). The observed decline in the activities of hydrolytic enzymes amylases suggest that BOA interferes with the vital metabolic processes in the germinating seedlings leading to growth reduction. The study reveals that BOA interferes with the germination and early seedling growth of vegetable crops and induces biochemical alterations. PMID:23033638

In 1912, Franz Boas published a study demonstrating the plastic nature of the human body in response to changes in the environment. The results of this study have been cited for the past 90 years as evidence of cranial plasticity. These findings, however, have never been critiqued thoroughly for their statistical and biological validity. This study presents a reassessment of Boas' data within a modern statistical and quantitative genetic framework. The data used here consist of head and face measurements on over 8,000 individuals of various European ethnic groups. By using pedigree information contained in Boas' data, narrow sense heritabilities are estimated by the method of maximum likelihood. In addition, a series of t tests and regression analyses are performed to determine the statistical validity of Boas' original findings on differentiation between American and European-born children and the prolonged effect of the environment on cranial form. Results indicate the relatively high genetic component of the head and face diameters despite the environmental differences during development. Results point to very small and insignificant differences between European- and American-born offspring, and no effect of exposure to the American environment on the cranial index in children. These results contradict Boas' original findings and demonstrate that they may no longer be used to support arguments of plasticity in cranial morphology. PMID:12374854

Seed predation has major effects on the reproductive success of individuals, spatial patterns of populations, genetic variability, interspecific interactions and ultimately in the diversity of tree communities. At a Brazilian savanna, I evaluated the proportional crop loss of Eriotheca gracilipes due the Blue-Fronted Amazon (Amazona aestiva) during a fruiting period. Also, I analyzed the relationship between proportional crop loss to Amazons and both fruit crop size and the distance from the nearest damaged conspecific. Trees produced from 1 to 109 fruits, so that Amazons foraged more often on trees bearing larger fruit crop size, while seldom visited less productive trees. Moreover, the relationship between fruit crop sizes and the number of depredated fruits was significant. However, when only damaged trees were assessed, I found a negative and significant relation between fruit crop size and proportional crop loss to Blue-Fronted Amazons. Taking into account this as a measure more directly related to the probability of seed survival, a negative density dependent effect emerged. Also, Amazons similarly damaged the fruit crops of either close or distant neighboring damaged trees. Hence, in spite of Blue-Fronted Amazons searched for E. gracilipes bearing large fruit crops, they were swamped due to the presence of more fruits than they could eat. Moderate seed predation by Blue-Fronted Amazons either at trees with large fruit crops or in areas where fruiting trees were aggregated implies in an enhanced probability of E. gracilipes seed survival and consequent regeneration success. PMID:25627593

The growing international trade in live wildlife has the potential to result in continuing establishment of nonnative animal populations in the United States. Snakes may pose particularly high risks as potentially invasive species, as exemplified by the decimation of Guam's vertebrate fauna by the accidentally introduced brown tree snake. Herein, ecological and commercial predictors of the likelihood of establishment of invasive populations were used to model risk associated with legal commercial imports of 23 species of boas, pythons, and relatives into the United States during the period 1989-2000. Data on ecological variables were collected from multiple sources, while data on commercial variables were collated from import records maintained by the U.S. Fish and Wildlife Service. Results of the risk-assessment models indicate that species including boa constrictors (Boa constrictor), ball pythons (Python regius), and reticulated pythons (P. reticulatus) may pose particularly high risks as potentially invasive species. Recommendations for reducing risk of establishment of invasive populations of snakes and/or pathogens include temporary quarantine of imports to increase detection rates of nonnative pathogens, increasing research attention to reptile pathogens, reducing the risk that nonnative snakes will reach certain areas with high numbers of federally listed species (such as the Florida Keys), and attempting to better educate individuals purchasing reptiles. PMID:16022706

Sigmund Freud's and C. G. Jung's turn to evolutionist anthropological material after 1909 is usually seen as a logical progression of their long-term interest in such material. It is also seen that they used this material ignorant of the significant challenges to the evolutionist paradigm underpinning such material, in particular the challenges led by Franz Boas. This paper argues otherwise: that both psychologists' turnings to such material was a new development, that neither had shown great interest in such material before 1909, and that their turnings to such material, far from being taken in ignorance of the challenges to evolutionist anthropology, were engagements with those challenges, because the evolutionist paradigm lay at the base of psychoanalysis. It argues that it is no coincidence that this engagement occurred after their return from America in 1909, where they had come into first-hand contact with the challenges of Franz Boas. PMID:26665301

Sigmund Freud's and C. G. Jung's turn to evolutionist anthropological material after 1909 is usually seen as a logical progression of their long-term interest in such material. It is also seen that they used this material ignorant of the significant challenges to the evolutionist paradigm underpinning such material, in particular the challenges led by Franz Boas. This paper argues otherwise: that both psychologists' turnings to such material was a new development, that neither had shown great interest in such material before 1909, and that their turnings to such material, far from being taken in ignorance of the challenges to evolutionist anthropology, were engagements with those challenges, because the evolutionist paradigm lay at the base of psychoanalysis. It argues that it is no coincidence that this engagement occurred after their return from America in 1909, where they had come into first-hand contact with the challenges of Franz Boas. PMID:26665301

After demonstrating chronic weight loss, prostration, and muscle flaccidness, a captive-bred 9-mo-old boa constrictor (Boa constrictor constrictor) died and was submitted for necropsy. Along the spinal column there were multiple, yellowish white, macroscopic nodules of 1-5 mm in diameter in the ventral side of the vertebral body and in the intervertebral spaces. Severe multifocal necrotizing osteomyelitis associated with granulomatous inflammation was the main histologic finding in the vertebral column. In the liver, there was discrete but similar granulomatous changes. Positive anti-Salmonella immunostaining was observed in the spinal column and in the liver. Salmonella enterica serovar Derby was isolated from fragments of the spinal column. These bacteria are important cause of disease in captive reptiles. PMID:25314834

Parthenogenesis in vertebrates is considered an evolutionary novelty. In snakes, all of which exhibit genetic sex determination with ZZ : ZW sex chromosomes, this rare form of asexual reproduction has failed to yield viable female WW offspring. Only through complex experimental manipulations have WW females been produced, and only in fish and amphibians. Through microsatellite DNA fingerprinting, we provide the first evidence of facultative parthenogenesis in a Boa constrictor, identifying multiple, viable, non-experimentally induced females for the first time in any vertebrate lineage. Although the elevated homozygosity of the offspring in relation to the mother suggests that the mechanism responsible may be terminal fusion automixis, no males were produced, potentially indicating maternal sex chromosome hemizygosity (WO). These findings provide the first evidence of parthenogenesis in the family Boidae (Boas), and suggest that WW females may be more common within basal reptilian lineages than previously assumed. PMID:21047849

In the late nineteenth century Franz Boas was responsible for assembling anthropometric data from North Amerindians. Approximately 15,000 subjects were measured, but the data have never been systematically analyzed. Here we describe our efforts to develop a computerized database from Boas's data and present the first systematic analysis of these data. In addition to a general analysis of North Amerindian anthropometric variation, we also present a more detailed analysis of anthropometric variation among tribes located in the American Northwest. In the general analysis we find that anthropometric variation is strongly patterned along geographic lines. We examine geographic and language patterning by grouping tribes by culture area and language phylum. Both have high explanatory power, culture area being the higher. The Northwest analysis shows that both language and geographic location are important in explaining anthropometric variation. PMID:1607187

BOA system is a mobile pipe-external robotic crawler used to remotely strip and bag asbestos-containing lagging and insulation materials from various diameter pipes in (primarily) industrial installations. Steam and process lines within the DOE weapons complex warrant the use of a remote device due to high labor costs and high level of radioactive contamination, making manual removal costly and inefficient. Currently targeted facilities for demonstration and remediation are Fernald in Ohio and Oak Ridge in Tennessee.

The program was tasked with implementing time dependent analysis of charges particles into an existing finite element code with adaptive meshing, called Beam Optics Analyzer (BOA). BOA was initially funded by a DOE Phase II program to use the finite element method with adaptive meshing to track particles in unstructured meshes. It uses modern programming techniques, state-of-the-art data structures, so that new methods, features and capabilities are easily added and maintained. This Phase II program was funded to implement plasma simulations in BOA and extend its capabilities to model thermal electrons, secondary emissions, self magnetic field and implement a more comprehensive post-processing and feature-rich GUI. The program was successful in implementing thermal electrons, secondary emissions, and self magnetic field calculations. The BOA GUI was also upgraded significantly, and CCR is receiving interest from the microwave tube and semiconductor equipment industry for the code. Implementation of PIC analysis was partially successful. Computational resource requirements for modeling more than 2000 particles begin to exceed the capability of most readily available computers. Modern plasma analysis typically requires modeling of approximately 2 million particles or more. The problem is that tracking many particles in an unstructured mesh that is adapting becomes inefficient. In particular memory requirements become excessive. This probably makes particle tracking in unstructured meshes currently unfeasible with commonly available computer resources. Consequently, Calabazas Creek Research, Inc. is exploring hybrid codes where the electromagnetic fields are solved on the unstructured, adaptive mesh while particles are tracked on a fixed mesh. Efficient interpolation routines should be able to transfer information between nodes of the two meshes. If successfully developed, this could provide high accuracy and reasonable computational efficiency.

Franz Boas has been used as an authority for the existence of cannibalism among the Kwakiutl of British Columbia, as cited in Patterns of Culture. There is reason to think, however, that all his evidence is hearsay, and that he himself never witnessed an act of cannibalism. One indication is that he eliminated all references to such acts in his final overview, published posthumously as Kwakiutl Ethnology. PMID:3511138

The project described in this report targets the development of a mechanized system for safe, cost-efficient and automated abatement of asbestos containing materials used as pipe insulation. Based on several key design criteria and site visits, a proof-of-concept prototype robot system, dubbed BOA, was designed and built, which automatically strips the lagging and insulation from the pipes, and encapsulates them under complete vacuum operation. The system can operate on straight runs of piping in horizontal or vertical orientations. Currently we are limited to four-inch diameter piping without obstacles as well as a somewhat laborious emplacement and removal procedure -- restrictions to be alleviated through continued development. BOA removed asbestos at a rate of 4-5 ft./h compared to 3 ft./h for manual removal of asbestos with a 3-person crew. The containment and vacuum system on BOA was able to achieve the regulatory requirement for airborne fiber emissions of 0.01 fibers/ccm/ 8-hr. shift. This program consists of two phases. The first phase was completed and a demonstration was given to a review panel, consisting of DOE headquarters and site representatives as well as commercial abatement industry representatives. Based on the technical and programmatic recommendations drafted, presented and discussed during the review meeting, a new plan for the Phase II effort of this project was developed. Phase 11 will consist of a 26-month effort, with an up-front 4-month site-, market-, cost/benefit and regulatory study before the next BOA robot (14 months) is built, and then deployed and demonstrated (3 months) at a DOE site (such as Fernald or Oak Ridge) by the beginning of FY`97.

Two boa constrictors (Boa constrictor imperator) presented with paresis of the trunk originating cranial to the cloaca. Radiographs were consistent with proliferative bone lesions involving several vertebrae. Computed tomography (CT) demonstrated the presence of lytic/expansile lesions. Computed tomography-guided biopsies of the lesions were performed without complications. Histology was consistent with bacterial osteomyelitis and osteoarthritis. Gram-negative bacteria (Salmonella sp. and Pseudomonas sp.) were isolated from cultures of the biopsies. Medical treatment with specific antibiotics was attempted for several weeks in both cases without clinical or radiographic improvements. The animals were euthanized, and necropsy confirmed the findings observed upon CT. To the authors' knowledge, this is the first report of the use of CT-guided biopsies to evaluate proliferative vertebral lesions in snakes. In the present report, CT-guided biopsies were easily performed, and both histologic and microbiologic results were consistent with the final diagnosis. PMID:25632696

An adult male wild-caught true red-tail boa (Boa constrictor constrictor), imported from Surinam, was presented for anorexia, extreme lethargy, and coelomic swelling in the cranial third of the body, in the anatomic location of the thymus. The snake died a few minutes after blood sampling via cardiocentesis. Hematology revealed anemia and extreme leukocytosis (820 × 10(3)/ml) characterized by a predominance (95%) of lymphocytes. Necropsy revealed enlargement of most of the visceral organs. Histology confirmed lymphoblastic lymphoma with a leukemic blood profile and diffuse infiltration of some of the heart, thymus, bone marrow, kidney, spleen, lung, and liver. Several large intracytoplasmic eosinophilic inclusion bodies surrounded by narrow clear "halos" were identified within gastric mucosal cells, proximal and distal convoluted tubule epithelial cells, and splenic cells. The final diagnosis was lymphoblast lymphoma with a leukemic blood profile and concurrent inclusion body disease. PMID:21217051

A captive bred red tail boa (Boa constrictor constrictor) was presented with a large intraoral mass originating from the buccal gingiva, attached to the right dentary teeth row. Based on the clinical features and histological examination, the diagnosis of a peripheral odontogenic fibromyxoma was made. Sections of liver biopsies and circulating lymphocytes contained relatively few eosinophilic intracytoplasmic inclusion bodies, indistinguishable from those observed in inclusion body disease-affected snakes. Inclusion bodies were not observed in cells comprising the neoplastic mass. Using reverse transcription polymerase chain reaction (RT-PCR), arenavirus was detected in the neoplastic tissue. Two years after surgical removal of the mass, recurrence of the neoplastic lesion was observed. Numerous large inclusion body disease inclusions were abundantly present in the neoplastic cells of the recurrent fibromyxoma. Sections of liver biopsies and circulating lymphocytes contained relatively few intracytoplasmic inclusions. The RT-PCR revealed the presence of arenavirus in blood, a liver biopsy, and neoplastic tissue. The present case describes the co-occurrence of an arenavirus infection and an odontogenic fibromyxoma in a red tail boa. PMID:25776548

The climatologies of cloudiness and precipitation for the Amazon, are reviewed and the physical causes of some of the observed features and those which are not well known are explained. The atmospheric circulation over the Amazon is discussed on the large scale tropical circulations forced by deep diabatic heating sources. Weather deforestation which leads to a reduction in evapotranspiration into the atmosphere, and a reduction in precipitation and its implicated for the gobal climate is discussed. It is indicated that a large scale clearing of tropical rainforests there would be a reduction in rainfall which would have global effects on climate and weather both in the tropical and extratropical regions.

Despite very active deforestation in the last decade, the Amazon Basin is still primarily covered with trees and is a system in equilibrium. The Andes form a barrier at the western end of the basin and, coupled with the prevailing easterly winds, ensure an almost unique precipitation and water-recycling regime. On average 50% of the precipitation is recycled, and in some areas even more. The soils are poor. Most of the nitrogen and phosphorus is found in the soil, and the remaining nutrient elements are found in the standing biomass. There is some nutrient recycling and little loss from the intact ecosystem, and the small input of nutrients from precipitation maintains a small positive nutrient balance. Continued large-scale deforestation is likely to lead to increased erosion and water runoff with initial flooding in the lower Amazon, together with reduced evapotranspiration and ultimately reduced precipitation. Reduced precipitation in the Amazon could increase the tendency toward continentality and adversely affect climate and the present agriculture in south-central Brazil. 83 references, 1 figure, 5 tables.

Despite the very active deforestation of the last decade, the Amazon Basin is still primarily covered with trees and is a system in equilibrium. The Andes form a barrier at the western end of the basin and, coupled with the prevailing easterly winds, ensure an almost unique precipitation and water-recycling regime. On average 50 percent of the precipitation is recycled, and in some areas even more. The soils are poor. Most of the nitrogen and phosphorus is found in the soil, and the remaining nutrient elements are found in the standing biomass. There is some nutrient recycling and little loss from the intact ecosystem, and the small input of nutrients from precipitation maintains a small positive nutrient balance. Continued large-scale deforestation is likely to lead to increased erosion and water runoff with initial flooding in the lower Amazon, together with reduced evapotranspiration and ultimately reduced precipitation. Reduced precipitation in the Amazon could increase the tendency toward continentality and adversely affect climate and the present agriculture in south-central Brazil. PMID:17837908

The BOA system is a mobile pipe-external robotic crawler used to remotely strip and bag asbestos-containing lagging and insulation materials (ACLIM) from various diameter pipes in (primarily) industrial installations. Steam and process lines within the DOE weapons complex warrant the use of a remote device due to the high labor costs and high level of radioactive contamination, making manual removal extremely costly and highly inefficient. Currently targeted facilities for demonstration and remediation are Fernald in Ohio and Oak Ridge in Tennessee.

The BOA system is a mobile pipe-external robotic crawler used to remotely strip and bag asbestos-containing lagging and insulation materials (ACLIM) from various diameter pipes in (primarily) industrial installations. Steam and process lines within the DOE weapons complex warrant the use of a remote device due to the high labor costs and high level of radioactive contamination, making manual removal extremely costly and highly inefficient. Currently targeted facilities for demonstration and remediation are Fernald in Ohio and Oak Ridge in Tennessee.

Together with the development of the Large APEX Bolometer Camera (LABOCA) for the Atacama Pathfinder Experiment (APEX), a new data reduction package has been written. This software naturally interfaces with the telescope control system, and provides all functionalities for the reduction, analysis and visualization of bolometer data. It is used at APEX for real time processing of observations performed with LABOCA and other bolometer arrays, providing feedback to the observer. Written in an easy-to-script language, BoA is also used offline to reduce APEX continuum data. In this paper, the general structure of this software is presented, and its online and offline capabilities are described.

SummaryA bathymetric survey of 575 km of the central Amazon River and one of its tributaries, the Purus, are combined with gauged data to characterise the Amazon flood wave, and for hydraulic modelling of the main channel for the period June 1995-March 1997 with the LISFLOOD-FP and HEC-RAS hydraulic models. Our investigations show that the Amazon flood wave is subcritical and diffusive in character and, due to shallow bed slopes, backwater conditions control significant reach lengths and are present for low and high water states. Comparison of the different models shows that it is necessary to include at least the diffusion term in any model, and the RMSE error in predicted water elevation at all cross sections introduced by ignoring the acceleration and advection terms is of the order of 0.02-0.03 m. The use of a wide rectangular channel approximation introduces an error of 0.10-0.15 m on the predicted water levels. Reducing the bathymetry to a simple bed slope and with mean cross section only, introduces an error in the order of 0.5 m. These results show that when compared to the mean annual amplitude of the Amazon flood wave of 11-12 m, water levels are relatively insensitive to the bathymetry of the channel model. The implication for remote sensing studies of the central Amazon channel, such as those proposed with the Surface Water and Ocean Topography mission (SWOT), is that even relatively crude assumptions regarding the channel bathymetry will be valid in order to derive discharge from water surface slope of the main channel, as long as the mean channel area is approximately correct.

This paper describes the BOA system, a mobile pipe-external crawler used to remotely strip and bag (possibly contaminated) asbestos-containing lagging and insulation materials (ACLIM) from various diameter pipes in (primarily) industrial installations across the DOE weapons complex. The mechanical removal of ACLIM is very cost-effective due to the relatively low productivity and high cost involved in human removal scenarios. BOA, a mechanical system capable of removing most forms of lagging (paper, plaster, aluminum sheet, clamps, screws and chicken-wire), and insulation (paper, tar, asbestos fiber, mag-block) uses a circular cutter and compression paddles to cut and strip the insulation off the pipe through compression, while a HEPA-filter and encapsulant system maintain a certifiable vacuum and moisture content inside the system and on the pipe, respectively. The crawler system has been built and is currently undergoing testing. Key design parameters and performance parameters are developed and used in performance testing. Since the current system is a testbed, we also discuss future enhancements and outline two deployment scenarios (robotic and manual) for the final system to be designed and completed by the end of FY `95. An on-site demonstration is currently planned for Fernald in Ohio and Oak Ridge in Tennessee.

Colonization of islands can dramatically influence the evolutionary trajectories of organisms, with both deterministic and stochastic processes driving adaptation and diversification. Some island colonists evolve extremely large or small body sizes, presumably in response to unique ecological circumstances present on islands. One example of this phenomenon, the Greater Antillean boas, includes both small (<90 cm) and large (4 m) species occurring on the Greater Antilles and Bahamas, with some islands supporting pairs or trios of body-size divergent species. These boas have been shown to comprise a monophyletic radiation arising from a Miocene dispersal event to the Greater Antilles, though it is not known whether co-occurrence of small and large species is a result of dispersal or in situ evolution. Here, we provide the first comprehensive species phylogeny for this clade combined with morphometric and ecological data to show that small body size evolved repeatedly on separate islands in association with specialization in substrate use. Our results further suggest that microhabitat specialization is linked to increased rates of head shape diversification among specialists. Our findings show that ecological specialization following island colonization promotes morphological diversity through deterministic body size evolution and cranial morphological diversification that is contingent on island- and species-specific factors. PMID:27345593

ARIES consists of a 6-wheeled K3A mobile platform, a compact subturret, a sonar imaging system, a laser-based light detection and ranging (lidar) navigation beacon system, and a camera positioning system. It has a sonar imaging system used in navigation and collision avoidance and an automatic docking/charging system. Drum-referencing algorithms and camera-positioning algorithms have been included in the primitive instruction set for the robot. The robot`s navigation is based on Synchro-Drive, a patented design that utilizes concentric shafts to distribute drive and steering power to the six wheels simultaneously. ARIES uses a virtual path concept in which only a limited amount of information needs to be provided to the control computer in order to get the vehicle moving. The safety and health evaluation, during the human factors assessment, found several areas of concern including ergonomics, laser hazards, tripping hazards, fall-from-above and struck-by hazards, electrical hazards, and decontamination of the system. BOA is a self-propelled automated mini-enclosure, able to remove insulation from installed pipes, primarily of 4 inch nominal outside diameter. The system is designed for two operators: one oversees the abatement head operation from a distance of 10 or 15 feet using a pendant control and the other bags the debris at a cyclonic bagging station that is attached by a vacuum hose to the cutting head. Since the abatement head is its own enclosure, there may be no need for further enclosures to be built. The system wets and removes asbestos insulation automatically, cutting the debris into consistent chunks and moving the wave under a strong vacuum to a bagging machine. Prior to reaching the bagging operation, the material passes through a water separator which greatly reduces the weight of the debris and allows recirculation of water, after sufficient filtration. The safety and health evaluation, during the human factors assessment, focused on: noise, dust

The climatologies of cloudiness and precipitation for the Amazon are reviewed. The physical causes of observed features are explained. The question whether deforestation leads to a reduction in evapotranspiration into the atmosphere is examined, as well as the reduction in precipitation and its implication for the global climate. There are indications that for large scale clearing of tropical rain forests there would indeed be a reduction in rainfall, which would have global effects in terms of climate and weather.

As early as 1887, the anthropologist Franz Boas began to combat scientific racism and the insistence that blacks were of lower intelligence than whites. Throughout his career, Boas guided anthropology to a consensus that people of color were not racially inferior and that they possessed unique and historically specific cultures. (SLD)

In the humid tropics, on the edges of the Amazon forest, the technological challenges to establishing and maintaining productive and sustainable agricultural systems have yet to be overcome. The groups involved in agriculture in the north of Brazil still engage in the practice of slash and burn in order to prepare and fertilize the soil. This produces negative effects for the local and global environment, without the counter-effect of providing social benefits to rural communities. Whether this process continues is of fundamental importance to many countries because it means that slash and burn agriculture is advancing on the Amazon rainforest, with a negative effect on every dimension of national policy. Beyond social political problems the biggest challenge for researchers in the field of tropical agriculture is to offer technological alternatives that can sustain agriculture in soils derived from sedimentary rocks that have been subjected to a high degree of weathering. In this article patented information is also discussed. Experiments undertaken in this region recommend taking advantage of the rapid growth of plants in the tropics. We aimed at proposing a suitable alternative system for a sustainable soil management in the particular conditions of humid tropics, named as "no-till in alley cropping using tree leguminous mulch." This system offers the advantages of: bringing together, in the same space and at the same time, the processes of cultivation and the regeneration of soil fertility. PMID:20653534

A recent greenhouse study revealed a significant reduction of germination and growth of redroot pigweed (Amaranthus retroflexus) and common purslane (Portulaca oleracea) by rye mulch, whereas velvetleaf (Abutilon theophrasti) and common lambsquarters (Chenopodium album) were not suppressed. Since BOA detoxification by metabolic alteration may influence the relation between the benzoxazinoid content of the soil mulch and weed suppression, we tested the dynamics in BOA detoxification in different plant organs of three and 10-day-old seedlings of four warm season weeds incubated with five BOA concentrations (4, 20, 40, 80, and 200 μmol g(-1) fresh weight). In addition, germination and length of 3-day-old seedlings were measured after exposure to 0, 0.3, 1.5, 3, 6, and 15 μmol BOA. Finally, we tested the influence of the MDR translocator inhibitors verapamil, nifedipine, and the GST inhibitor ethycrynic acid on BOA accumulation and detoxification activity. Due to BOA-detoxification, all weeds were able to grow in environments with low BOA contents. At higher contents, Abutilon theophrasti and Chenopodium album had a better chance to survive because of highly active mechanisms that avoided the uptake of BOA (A. theophrasti) and of efficient detoxification activities in youngest seedlings (C. album). The interpretation of all of the data gave the following sequence of increasing sensitivity: A. theophrasti < C. album < P. oleracea ≤ A. retroflexus. The results were in agreement with recent findings of the suppression of these weeds by rye mulches and their benzoxazinoid contents. Our studies demonstrate for the first time that the detoxification of BOA influences the survival of certain weeds in environments enriched with this allelochemical. Therefore, detoxification processes affect the potential for weed suppression by soil allelochemicals in sustainable weed management. PMID:22614450

Atmospheric carbon dioxide records indicate that the land surface has acted as a strong global carbon sink over recent decades, with a substantial fraction of this sink probably located in the tropics, particularly in the Amazon. Nevertheless, it is unclear how the terrestrial carbon sink will evolve as climate and atmospheric composition continue to change. Here we analyse the historical evolution of the biomass dynamics of the Amazon rainforest over three decades using a distributed network of 321 plots. While this analysis confirms that Amazon forests have acted as a long-term net biomass sink, we find a long-term decreasing trend of carbon accumulation. Rates of net increase in above-ground biomass declined by one-third during the past decade compared to the 1990s. This is a consequence of growth rate increases levelling off recently, while biomass mortality persistently increased throughout, leading to a shortening of carbon residence times. Potential drivers for the mortality increase include greater climate variability, and feedbacks of faster growth on mortality, resulting in shortened tree longevity. The observed decline of the Amazon sink diverges markedly from the recent increase in terrestrial carbon uptake at the global scale, and is contrary to expectations based on models. PMID:25788097

Atmospheric carbon dioxide records indicate that the land surface has acted as a strong global carbon sink over recent decades, with a substantial fraction of this sink probably located in the tropics, particularly in the Amazon. Nevertheless, it is unclear how the terrestrial carbon sink will evolve as climate and atmospheric composition continue to change. Here we analyse the historical evolution of the biomass dynamics of the Amazon rainforest over three decades using a distributed network of 321 plots. While this analysis confirms that Amazon forests have acted as a long-term net biomass sink, we find a long-term decreasing trend of carbon accumulation. Rates of net increase in above-ground biomass declined by one-third during the past decade compared to the 1990s. This is a consequence of growth rate increases levelling off recently, while biomass mortality persistently increased throughout, leading to a shortening of carbon residence times. Potential drivers for the mortality increase include greater climate variability, and feedbacks of faster growth on mortality, resulting in shortened tree longevity. The observed decline of the Amazon sink diverges markedly from the recent increase in terrestrial carbon uptake at the global scale, and is contrary to expectations based on models.

The Amazon is a globally important system, providing a host of ecosystem services from climate regulation to food sources. It is also home to a quarter of all global diversity. Large swathes of forest are removed each year, and many models have attempted to predict the spatial patterns of this forest loss. The spatial patterns of deforestation are determined largely by the patterns of roads that open access to frontier areas and expansion of the road network in the Amazon is largely determined by profit seeking logging activities. Here we present predictions for the spatial distribution of standing value of timber across the Amazon. We show that the patterns of timber value reflect large-scale ecological gradients, determining the spatial distribution of functional traits of trees which are, in turn, correlated with timber values. We expect that understanding the spatial patterns of timber value across the Amazon will aid predictions of logging movements and thus predictions of potential future road developments. These predictions in turn will be of great use in estimating the spatial patterns of deforestation in this globally important biome. PMID:22590520

The Amazon is a globally important system, providing a host of ecosystem services from climate regulation to food sources. It is also home to a quarter of all global diversity. Large swathes of forest are removed each year, and many models have attempted to predict the spatial patterns of this forest loss. The spatial patterns of deforestation are determined largely by the patterns of roads that open access to frontier areas and expansion of the road network in the Amazon is largely determined by profit seeking logging activities. Here we present predictions for the spatial distribution of standing value of timber across the Amazon. We show that the patterns of timber value reflect large-scale ecological gradients, determining the spatial distribution of functional traits of trees which are, in turn, correlated with timber values. We expect that understanding the spatial patterns of timber value across the Amazon will aid predictions of logging movements and thus predictions of potential future road developments. These predictions in turn will be of great use in estimating the spatial patterns of deforestation in this globally important biome. PMID:22590520

Automatically creating opening books is a natural step towards the building of strong game-playing programs, especially when there is little available knowledge about the game. However, while recent popular Monte-Carlo Tree-Search programs showed strong results for various games, we show here that programs based on such methods cannot efficiently use opening books created using algorithms based on minimax. To overcome this issue, we propose to use an MCTS-based technique, Meta-MCTS, to create such opening books. This method, while requiring some tuning to arrive at the best opening book possible, shows promising results to create an opening book for the game of the Amazons, even if this is at the cost of removing its Monte-Carlo part.

The photoreceptors of Boa constrictor, a boid snake of the subfamily Boinae, were examined with scanning electron microscopy and microspectrophotometry. The retina of B. constrictor is duplex but highly dominated by rods, cones comprising 11% of the photoreceptor population. The rather tightly packed rods have relatively long outer segments with proximal ends that are somewhat tapered. There are two morphologically distinct, single cones. The most common cone by far has a large inner segment and a relatively stout outer segment. The second cone, seen only infrequently, has a substantially smaller inner segment and a finer outer segment. The visual pigments of B. constrictor are virtually identical to those of the pythonine boid, Python regius. Three different visual pigments are present, all based on vitamin A(1.) The visual pigment of the rods has a wavelength of peak absorbance (lambda(max)) at 495 +/- 2 nm. The visual pigment of the more common, large cone has a lambda(max) at 549 +/- 1 nm. The small, rare cone contains a visual pigment with lambda(max) at 357 +/- 2 nm, providing the snake with sensitivity in the ultraviolet. We suggest that B. constrictor might employ UV sensitivity to locate conspecifics and/or to improve hunting efficiency. The data indicate that wavelength discrimination above 430 nm would not be possible without some input from the rods. PMID:11550183

Many snakes are able to use their chemosensory system to detect scent of conspecifics, which is important in many social contexts. Age discrimination based on chemical cues may be especially important to ensure access to sexually mature potential partners. In this study, we used 24 individual Boa constrictor snakes (12 adults mature and 12 non-mature individuals) that had been captured in different areas of Ecuador, and were maintained in captivity at the Vivarium of Quito. We used tongue-flick experiments to examine whether these snakes were able to discriminate between scents from mature and non-mature individuals. Results showed that B. constrictor snakes used chemical cues to recognize conspecifics and that the scent of individuals of different ages elicited chemosensory responses of different magnitudes. The scents from adult conspecifics elicited the quickest and highest chemosensory responses (i.e., short latency times and high tongue-flick rates), although we did not find differential responses to scent of males and females. The magnitude of the responses was lower to scent of sub adult individuals, and then even lower to scent of juvenile snakes, but in all cases the scent of snakes was discriminated from a blank control. We discuss the potential chemical mechanisms that may allow age recognition and its implications for social and sexual behavior of this snake species. PMID:23342514

The ecological diversity of Trypanosoma cruzi transmission in the Brazilian Amazon region is directly interlinked with the parasite's extensive reservoir, composed of 33 species of wild mammals within the following orders: Marsupialia, Chiroptera, Rodentia, Xenarthra, Carnivora and Primates; and of 16 species of wild triatomines, of which ten may be infected with T. cruzi. Four scenarios for the diversity of T. cruzi transmission in the Brazilian Amazon region are evident: (i) T. cruzi transmission between vectors and wild mammals, which is characterized as a wild enzooty encompassing the entire Amazon basin; (ii) accidental T. cruzi transmission from vectors and wild mammals to humans, when they invade the wild ecotope or when these vectors and wild mammals invade human homes; (iii) occupational Chagas disease among piassava (Leopoldinia piassaba) palm fiber gatherers, transmitted by the vector Rhodnius brethesi, for which these palm trees are the specific ecotope; (IV) oral T. cruzi transmission to humans through food contamination, particularly in juices from plants such as assai, which today is considered to be endemic in the Brazilian Amazon region, with more than 1500 cases notified. PMID:26254002

Growth rates for tropical forest trees estimated from radiocarbon ages and dendrometer measurements illustrate differences in forest age and structure among three sites located in the eastern, central and western Amazon basin. Although growth rates vary dramatically among individual trees overall the slowest growing trees (averaging \\sim0.1mm yr-1 as opposed to 0.3mm yr-1 diameter increment) are found in the central Amazon. Small individuals (DBH \\<30cm) have slower growth rates than larger diameter trees, and trees in this size class with radiocarbon ages >500 yr are encountered at all sites. Only \\sim2MgC ha-1 year-1, or \\SIM7% of annual photosynthesis, is allocated to growth of living wood at the eastern and central Amazon sites. Rates of C allocation to stem growth are similar across the three sites we studied because slowest growth occurs at the central Amazon site that has highest stem density and greatest biomass. Extrapolating our growth increment data to forest stand, we estimate the mean age of individual trees is \\SIM350 years in the central Amazon but \\SIM200\\-250 years in the other two areas. The mean age of C making up the trees has a smaller range of \\SIM250\\-310 years, because of the greater fraction of biomass in larger individuals in the eastern and western Amazon sites. These residence times for C are longer than those of 100\\-180 years obtained by simply dividing the total biomass C by the rate of C allocation to new wood for the same reason. We estimate that >20% of trees at all sites should have ages >300 years, and that maximum tree ages of >1000 years, though not common, are in accord with the growth rates we find. The fact that many Amazontrees attain ages greater than several centuries should be accounted for in management practices in these forests.

This program will obtain one external orbit of G191B2B, a previous SMOV4 BOA target. We will obtain spectra in the G130M, G160M, and G140L gratings at one cenwave each to 1} spot-check spectral performance, 2} obtain spatial profiles, and 3} complete updated target acquisition parameters. We will also test auto- wavecals within a BOA observation.

Two juvenile orange-winged amazons (Amazona amazonica) were initially trained to match visual stimuli by color, shape, and number of items, but not by size. After learning these three identity matching-to-sample tasks, the parrots transferred discriminative responding to new stimuli from the same categories that had been used in training (other colors, shapes, and numbers of items) as well as to stimuli from a different category (stimuli varying in size). In the critical testing phase, both parrots exhibited reliable relational matching-to-sample (RMTS) behavior, suggesting that they perceived and compared the relationship between objects in the sample stimulus pair to the relationship between objects in the comparison stimulus pairs, even though no physical matches were possible between items in the sample and comparison pairs. The parrots spontaneously exhibited this higher-order relational responding without having ever before been trained on RMTS tasks, therefore joining apes and crows in displaying this abstract cognitive behavior. PMID:26084679

Despite orders of magnitude difference in atmospheric reactivity and great diversity in biological functioning, little is known about monoterpene speciation in tropical forests. Here we report vertically resolved ambient air mixing ratios for 12 monoterpenes in a central Amazon rainforest including observations of the highly reactive cis-β-ocimene (160 ppt), trans-β-ocimene (79 ppt), and terpinolene (32 ppt) which accounted for an estimated 21% of total monoterpene composition yet 55% of the upper canopy monoterpene ozonolysis rate. All 12 monoterpenes showed a mixing ratio peak in the upper canopy, with three demonstrating subcanopy peaks in 7 of 11 profiles. Leaf level emissions of highly reactive monoterpenes accounted for up to 1.9% of photosynthesis confirming light-dependent emissions across several Amazontree genera. These results suggest that highly reactive monoterpenes play important antioxidant roles during photosynthesis in plants and serve as near-canopy sources of secondary organic aerosol precursors through atmospheric photooxidation via ozonolysis.

Despite orders of magnitude difference in atmospheric reactivity and great diversity in biological functioning, little is known about monoterpene speciation in tropical forests. Here we report vertically resolved ambient air mixing ratios for 12 monoterpenes in a central Amazon rainforest including observations of the highly reactive cis-β-ocimene (160 ppt), trans-β-ocimene (79 ppt), and terpinolene (32 ppt) which accounted for an estimated 21% of total monoterpene composition yet 55% of the upper canopy monoterpene ozonolysis rate. All 12 monoterpenes showed a mixing ratio peak in the upper canopy, with three demonstrating subcanopy peaks in 7 of 11 profiles. Leaf level emissions of highly reactive monoterpenes accounted for up to 1.9% of photosynthesis confirming light-dependent emissions across several Amazontree genera. These results suggest that highly reactive monoterpenes play important antioxidant roles during photosynthesis in plants and serve as near-canopy sources of secondary organic aerosol precursors through atmospheric photooxidation via ozonolysis.

Immunoglobulins (Igs), the key effectors of the adaptive immune system, mediate the specific recognition of foreign structures, i.e. antigens. In mammals, IgM production commonly precedes the production of IgG in the response to an infection. The reptilian counterpart of IgG is IgY, but the exact kinetics of the reptilian immune response are less well known. Boid inclusion body disease (BIBD), an often fatal disease of captive boas and pythons has been linked to reptarenavirus infection, and BIBD is believed to be immunosuppressive. However, so far, the study of the serological response towards reptarenaviruses in BIBD has been hampered by the lack of reagents. Thus we set up a purification protocol for boa constrictor IgY and IgM, which should also be applicable for other snake species. We used centrifugal filter units, poly ethylene glycol precipitation and gel permeation chromatography to purify and separate the IgM and IgY fractions from boa constrictor serum, which we further used to immunise rabbits. We affinity purified IgM and IgY specific reagents from the produced antiserum, and labelled the reagents with horseradish peroxidase. Finally, using the sera of snakes with known exposure to reptarenaviruses we demonstrated that the newly generated reagents can be utilised for serodiagnostic purposes, such as immunoblotting and immunofluorescent staining. To our knowledge, this is the first report to show reptarenavirus-specific antibodies in boa constrictors. PMID:27355360

Immunoglobulins (Igs), the key effectors of the adaptive immune system, mediate the specific recognition of foreign structures, i.e. antigens. In mammals, IgM production commonly precedes the production of IgG in the response to an infection. The reptilian counterpart of IgG is IgY, but the exact kinetics of the reptilian immune response are less well known. Boid inclusion body disease (BIBD), an often fatal disease of captive boas and pythons has been linked to reptarenavirus infection, and BIBD is believed to be immunosuppressive. However, so far, the study of the serological response towards reptarenaviruses in BIBD has been hampered by the lack of reagents. Thus we set up a purification protocol for boa constrictor IgY and IgM, which should also be applicable for other snake species. We used centrifugal filter units, poly ethylene glycol precipitation and gel permeation chromatography to purify and separate the IgM and IgY fractions from boa constrictor serum, which we further used to immunise rabbits. We affinity purified IgM and IgY specific reagents from the produced antiserum, and labelled the reagents with horseradish peroxidase. Finally, using the sera of snakes with known exposure to reptarenaviruses we demonstrated that the newly generated reagents can be utilised for serodiagnostic purposes, such as immunoblotting and immunofluorescent staining. To our knowledge, this is the first report to show reptarenavirus-specific antibodies in boa constrictors. PMID:27355360

Future intensification of Amazon drought resulting from climate change may cause increased fire activity, tree mortality, and emissions of carbon to the atmosphere across large areas of Amazonia. To provide a basis for addressing these issues, we examine properties of recent and future meteorological droughts in the Amazon in 35 climate models participating in the Coupled Model Intercomparison Project Phase 5 (CMIP5). We find that the CMIP5 climate models, as a group, simulate important properties of historical meteorological droughts in the Amazon. In addition, this group of models reproduces observed relationships between Amazon precipitation and regional sea surface temperature anomalies in the tropical Pacific and the North Atlantic oceans. Assuming the Representative Concentration Pathway 8.5 scenario for future drivers of climate change, the models project increases in the frequency and geographic extent of meteorological drought in the eastern Amazon, and the opposite in the West. For the region as a whole, the CMIP5 models suggest that the area affected by mild and severe meteorological drought will nearly double and triple, respectively, by 2100. Extremes of wetness are also projected to increase after 2040. Specifically, the frequency of periods of unusual wetness and the area affected by unusual wetness are projected to increase after 2040 in the Amazon as a whole, including in locations where annual mean precipitation is projected to decrease. Our analyses suggest that continued emissions of greenhouse gases will increase the likelihood of extreme events that have been shown to alter and degrade Amazonian forests. PMID:26460046

Future intensification of Amazon drought resulting from climate change may cause increased fire activity, tree mortality, and emissions of carbon to the atmosphere across large areas of Amazonia. To provide a basis for addressing these issues, we examine properties of recent and future meteorological droughts in the Amazon in 35 climate models participating in the Coupled Model Intercomparison Project Phase 5 (CMIP5). We find that the CMIP5 climate models, as a group, simulate important properties of historical meteorological droughts in the Amazon. In addition, this group of models reproduces observed relationships between Amazon precipitation and regional sea surface temperature anomalies in the tropical Pacific and the North Atlantic oceans. Assuming the Representative Concentration Pathway 8.5 scenario for future drivers of climate change, the models project increases in the frequency and geographic extent of meteorological drought in the eastern Amazon, and the opposite in the West. For the region as a whole, the CMIP5 models suggest that the area affected by mild and severe meteorological drought will nearly double and triple, respectively, by 2100. Extremes of wetness are also projected to increase after 2040. Specifically, the frequency of periods of unusual wetness and the area affected by unusual wetness are projected to increase after 2040 in the Amazon as a whole, including in locations where annual mean precipitation is projected to decrease. Our analyses suggest that continued emissions of greenhouse gases will increase the likelihood of extreme events that have been shown to alter and degrade Amazonian forests. PMID:26460046

Surface-to-atmosphere emissions of dimethyl sulfide (DMS) may impact global climate through the formation of gaseous sulfuric acid, which can yield secondary sulfate aerosols and contribute to new particle formation. While oceans are generally considered the dominant sources of DMS, a shortage of ecosystem observations prevents an accurate analysis of terrestrial DMS sources. Using mass spectrometry, we quantified ambient DMS mixing ratios within and above a primary rainforest ecosystem in the central Amazon Basin in real-time (2010-2011) and at high vertical resolution (2013-2014). Elevated but highly variable DMS mixing ratios were observed within the canopy, showing clear evidence of a net ecosystem source to the atmosphere during both day and night in both the dry and wet seasons. Periods of high DMS mixing ratios lasting up to 8 h (up to 160 parts per trillion (ppt)) often occurred within the canopy and near the surface during many evenings and nights. Daytime gradients showed mixing ratios (up to 80 ppt) peaking near the top of the canopy as well as near the ground following a rain event. The spatial and temporal distribution of DMS suggests that ambient levels and their potential climatic impacts are dominated by local soil and plant emissions. A soil source was confirmed by measurements of DMS emission fluxes from Amazon soils as a function of temperature and soil moisture. Furthermore, light- and temperature-dependent DMS emissions were measured from seven tropical tree species. Our study has important implications for understanding terrestrial DMS sources and their role in coupled land-atmosphere climate feedbacks.

Boa is a Neotropical genus of snakes historically recognized as monotypic despite its expansive distribution. The distinct morphological traits and color patterns exhibited by these snakes, together with the wide diversity of ecosystems they inhabit, collectively suggest that the genus may represent multiple species. Morphological variation within Boa also includes instances of dwarfism observed in multiple offshore island populations. Despite this substantial diversity, the systematics of the genus Boa has received little attention until very recently. In this study we examined the genetic structure and phylogenetic relationships of Boa populations using mitochondrial sequences and genome-wide SNP data obtained from RADseq. We analyzed these data at multiple geographic scales using a combination of phylogenetic inference (including coalescent-based species delimitation) and population genetic analyses. We identified extensive population structure across the range of the genus Boa and multiple lines of evidence for three widely-distributed clades roughly corresponding with the three primary land masses of the Western Hemisphere. We also find both mitochondrial and nuclear support for independent origins and parallel evolution of dwarfism on offshore island clusters in Belize and Cayos Cochinos Menor, Honduras. PMID:27241629

Boa constrictor is a wide ranging snake species that is common in the pet trade and is currently listed in CITES Appendix II. Hog Island boas, or Cayos Cochinos boas, are a dwarf, insular race of Boa constrictor imperator endemic to the Cayos Cochinos Archipelago, Honduras. Cayos Cochinos boas are prized in the international pet trade for their light pink dorsal coloration, as well as for being much smaller and more docile than mainland boas (Porras, 1999; Russo, 2007). The boa population in the Cayos Cochinos was heavily exploited for the pet trade from 1979 to 1993, and researchers reported finding no boas on the islands during a five day herpetological survey trip in the early 1990s (Wilson and CruzDiaz, 1993), leading to the speculation that the population had been extirpated (e.g., Russo, 2007). The Cayos Cochinos Archipelago Natural Marine Monument has been managed by the Honduran Coral Reef Foundation since 1994 and prohibits removal of boas from the area. Poaching for the pet trade continues today, although at a lower level. Due to the endemic nature of this island morph of B. c. imperator it is imperative that we understand the dynamics of the populations and the ongoing threats that could negatively impact their long-term survival.

The research area of this work is located at the estuary of the Amazon River (Brazil), near the river mouth. The results of air movement analysis on the surface atmospheric circulation over the Mouth of the Amazonas River, salinity and temperature measures as well as measurements of currents, carried out along a longitudinal section in the navigation canal region of the Northern Bar of the Amazon River (Barra Norte do Rio Amazonas) in June 2006, during the river flood season in the quadrature tide. The dynamics effects affect hydrodynamic,meteorological and hydrographical parameters at the river mouth. The conclusion drawn include that: a) the saline wedge-type stratification can be detected approximately 100km away from the mouth of the Amazon River during the end of the rainy season in the quadrature tide; b) probably, at the Amazon estuary the quadrature entrainment processes are dominant and they are the ones responsible for increased salinity detected in the surface layer, whereas turbulence scattering mixing is not so important. c) The large flow of fresh water from the Amazon River at the end of the rainy season implies the displacement of the saline front position over the internal Amazon continental platform, and d) The tidal wave shows a positive asymmetry in the canal, with floods lasting less than in the ebb tide. This asymmetry decreases towards the ocean, eventually becoming reversed in the presence of a saline wedge. The speeds, however, have a negative asymmetry, with more intense ebb tides, due to the river flow and is more evident by the existence of quadrature tides.

Pythons and boas are globally distributed and distantly related radiations with remarkable phenotypic and ecological diversity. We tested whether pythons, boas and their relatives have evolved convergent phenotypes when they display similar ecology. We collected geometric morphometric data on head shape for 1073 specimens representing over 80% of species. We show that these two groups display strong and widespread convergence when they occupy equivalent ecological niches and that the history of phenotypic evolution strongly matches the history of ecological diversification, suggesting that both processes are strongly coupled. These results are consistent with replicated adaptive radiation in both groups. We argue that strong selective pressures related to habitat-use have driven this convergence. Pythons and boas provide a new model system for the study of macro-evolutionary patterns of morphological and ecological evolution and they do so at a deeper level of divergence and global scale than any well-established adaptive radiation model systems. PMID:27264195

A female boa (Boa constrictor) from a zoological collection was submitted for necropsy after sudden death. Prominent pathological findings included a diphtheroid colitis, endoparasitism, focal pneumonia and inclusion bodies typical for inclusion body disease (IBD). In the colon entamoebae were identified, which differed in size and distribution from Entamoeba invadens. Gene sequence analysis of the 18S ribosomal RNA revealed 100% similarity with an Entamoeba species from the African bullfrog (Pyxicephalus adspersus), probably Entamoeba ranarum. The snake was possibly immunosuppressed, and the source of infection remains unclear. This is the first report of an infection with an amphibian Entamoeba species associated with colitis in a snake. PMID:18291588

Here we report the first witnessed attack on a marmoset by a constrictor snake. The incident occurred mid-morning in a gallery forest within an altered landscape of the Cerrado region of central Brazil and refers to a fatal attack by a Boa constrictor on two juvenile black-tufted-ear marmosets (Callithrix penicillata) simultaneously. The snake captured both individuals at a height of ~ 4 m while a group of eight marmosets traveled through the subcanopy. The actual strike was not seen. After 2 min, the boa fell to the ground with both marmosets in its coils and proceeded to kill one animal at a time through constriction. Two adult marmosets immediately descended to where the snake held its victims on the ground and attacked it. The snake showed no apparent reaction, and after ~ 1-2 min, the adults rejoined the remaining group members that were mobbing and vocalizing from 5 to 6 m above. The group left the scene ~ 7 min after the onset of the attack and was not seen again. The snake loosened its coils 10 min after its initial strike, left the two carcasses on the ground and stayed behind a nearby tree. Thus, we are not sure if the victims were in fact ingested. This report confirms that marmosets are vulnerable to boid snakes and capable of highly organized and cooperative antipredation behavior. It also suggests that snakes pose a greater threat to callitrichids than previously thought. PMID:26467338

We use evolutionary trees of haplotypes to study phenotypic associations by exhaustively examining all possible biallelic partitions of the tree, a technique we call tree scanning. If the first scan detects significant associations, additional rounds of tree scanning are used to partition the tree into three or more allelic classes. Two worked examples are presented. The first is a reanalysis of associations between haplotypes at the Alcohol Dehydrogenase locus in Drosophila melanogaster that was previously analyzed using a nested clade analysis, a more complicated technique for using haplotype trees to detect phenotypic associations. Tree scanning and the nested clade analysis yield the same inferences when permutation testing is used with both approaches. The second example is an analysis of associations between variation in various lipid traits and genetic variation at the Apolipoprotein E (APOE) gene in three human populations. Tree scanning successfully identified phenotypic associations expected from previous analyses. Tree scanning for the most part detected more associations and provided a better biological interpretative framework than single SNP analyses. We also show how prior information can be incorporated into the tree scan by starting with the traditional three electrophoretic alleles at APOE. Tree scanning detected genetically determined phenotypic heterogeneity within all three electrophoretic allelic classes. Overall, tree scanning is a simple, powerful, and flexible method for using haplotype trees to detect phenotype/genotype associations at candidate loci. PMID:15371364

We describe a new species of the bee tribe Tapinotaspidini, Tropidopedia guaranae Mahlmann & Oliveira sp. n. from the Amazon rainforest, Amazonas, Brazil. We emend the phylogenetic tree of Aguiar & Melo (2007) to include the new species and comment upon some characters presented by those authors. PMID:26624352

The cold neutron spectrum of the Beamline for neutron Optics and other Applications (BOA) at Paul Scherrer Institut enables high contrast neutron imaging because neutron cross sections for many materials increase with neutron wavelength. However, for many neutron imaging applications, spatial resolution can be as important as contrast. In this paper the neutron transmission imaging capabilities of an MCP/Timepix detector installed at the BOA beamline are presented, demonstrating the possibilities for studying sub-20 μm features in various samples. In addition to conventional neutron radiography and microtomography, the high degree of neutron polarization at the BOA beamline can be very attractive for imaging of magnetic fields, as demonstrated by our measurements. We also show that a collimated cold neutron beamline combined with a high resolution detector can produce image artifacts, (e.g. edge enhancements) due to neutron refraction and scattering. The results of our experiments indicate that the BOA beamline is a valuable addition to neutron imaging facilities, providing improved and sometimes unique capabilities for non-destructive studies with cold neutrons.

Benzoxazolin-2(3H)-one (BOA) is an important transformation product of cyclic hydroxamic acids of maize. This natural product has the potential of providing resistance to maize from Fusarium verticillioides, a major pathogen of maize. However, it has been demonstrated that this maize pathogen and ...

Boa constrictor is one of the snakes found in the riverine areas of Nigeria, especially in the Niger Delta regions. The fat obtained from the snake is used ethno-medicinally for the treatment of burns and inflammatory conditions. The purpose of this study was to validate the traditional use of this crude fat and oil. The fat obtained from the Boa snake was subjected to some physiochemical screening tests. A systematic chemical and antimicrobial investigation was carried out using some bacterial found in wound such as Staphylococcus aureus, B. subtilis and Streptococcus pyrogenes. The degree of zone of inhibition was a measure of the antimicrobial activity of the fat and oil. The maximal inhibitory dilution was determined for significant zone. The anti-inflammatory investigation was done using the croton oil induced ear edema. The results of the study revealed a potent anti-inflammatory and a significant antimicrobial activity of the fat from Boa constrictor against S. aureus and S. pyrogenes organisms, thus, justifying the traditional usage of the fat of Boa constrictor. PMID:19051590

The benzoxazolinones, specifically benzoxazolin-2(3H)-one (BOA), are important transformation products of cyclic hydroxamic acids that serve as allelochemicals, which provide resistance to maize from pathogenic bacteria and fungi, and insects. However, several maize pathogens such as Fusarium verti...

Presents a Project Learning Tree (PLT) activity that has students investigate and compare the lifecycle of a tree to other living things and the tree's role in the ecosystem. Includes background material as well as step-by-step instructions, variation and enrichment ideas, assessment opportunities, and student worksheets. (SJR)

Parrots of the genus Amazona are among the most threatened species of the Order Pscittaciformes. This work describes allozyme polymorphisms in three Amazon parrot species--the Blue-fronted Amazon (Amazona aestiva), the Orange-winged Amazon (Amazona amazonica), and the Festive Amazon (Amazona festiva) -, and provides useful data for the evaluation of their genetic variability. We electrophoretically analyzed blood samples from 68 wild-caught individuals, maintained in captivity in three Brazilian zoos. Eight of the ten studied enzyme loci exhibited polymorphism. Glucosephosphate isomerase (Gpi) proved to be a diagnostic locus for the identification of these Amazon species. The expected average heterozygosity of the Blue-fronted Amazon (0.060) differed significantly from the expected heterozygosities of the Orange-winged Amazon and the Festive Amazon (0.040 and 0.039, respectively). This result was discussed as a consequence of hybridization between two geographic A. aestiva subspecies, and alternatively as a particular trait of this species. Genetic variability of the Blue-fronted Amazon compared to birds in general is not low on a species-wide level, despite the fact that this parrot is one of the most illegally traded species. Allozyme analysis proved to be an useful tool in monitoring the genetic variation within the genus Amazona and can be applied in the management program of other threatened species of this genus. PMID:18278355

Surface-to-atmosphere emissions of dimethyl sulfide (DMS) may impact global climate 44 through the formation of gaseous sulfuric acid, which can yield secondary sulfate 45 aerosols and contribute to new particle formation. While oceans are generally 46 considered the dominant source of DMS, a shortage of ecosystem observations prevents 47 an accurate analysis of terrestrial DMS sources. Using mass spectrometry, we quantified 48 ambient DMS mixing ratios within and above a primary rainforest ecosystem in the 49 central Amazon Basin in real-time (2010-2011) and at high vertical resolution (2013-50 2014). Elevated but highly variable DMS mixing ratios were observed within themore » 51 canopy, showing clear evidence of a net ecosystem source to the atmosphere during 52 both day and night in both the dry and wet seasons. Periods of high DMS mixing ratios 53 lasting up to 8 hours (up to 160 ppt) often occurred within the canopy and near the 54 surface during many evenings and nights. Daytime gradients showed mixing ratios (up 55 to 80 ppt) peaking near the top of the canopy as well as near the ground following a rain 56 event. The spatial and temporal distribution of DMS suggests that ambient levels and 57 their potential climatic impacts are dominated by local soil and plant emissions. A soil 58 source was confirmed by measurements of DMS emission fluxes from Amazon soils as 59 a function of temperature and soil moisture. Furthermore, light and temperature 60 dependent DMS emissions were measured from seven tropical tree species. Our study 61 has important implications for understanding terrestrial DMS sources and their role in 62 coupled land-atmosphere climate feedbacks. 63« less

Surface-to-atmosphere emissions of dimethyl sulfide (DMS) may impact global climate 44 through the formation of gaseous sulfuric acid, which can yield secondary sulfate 45 aerosols and contribute to new particle formation. While oceans are generally 46 considered the dominant source of DMS, a shortage of ecosystem observations prevents 47 an accurate analysis of terrestrial DMS sources. Using mass spectrometry, we quantified 48 ambient DMS mixing ratios within and above a primary rainforest ecosystem in the 49 central Amazon Basin in real-time (2010-2011) and at high vertical resolution (2013-50 2014). Elevated but highly variable DMS mixing ratios were observed within the 51 canopy, showing clear evidence of a net ecosystem source to the atmosphere during 52 both day and night in both the dry and wet seasons. Periods of high DMS mixing ratios 53 lasting up to 8 hours (up to 160 ppt) often occurred within the canopy and near the 54 surface during many evenings and nights. Daytime gradients showed mixing ratios (up 55 to 80 ppt) peaking near the top of the canopy as well as near the ground following a rain 56 event. The spatial and temporal distribution of DMS suggests that ambient levels and 57 their potential climatic impacts are dominated by local soil and plant emissions. A soil 58 source was confirmed by measurements of DMS emission fluxes from Amazon soils as 59 a function of temperature and soil moisture. Furthermore, light and temperature 60 dependent DMS emissions were measured from seven tropical tree species. Our study 61 has important implications for understanding terrestrial DMS sources and their role in 62 coupled land-atmosphere climate feedbacks. 63

forests are mainly expected in the southwest and south, which have become slightly drier and hotter, consistent with tree mortality trends observed at the RAINFOR Amazon forest plot network established in the early 1980s consisting of approximately 150 regularly censused 1ha plots in intact forests located across the whole basin.

The Brazilian National Institute for Space Research (INPE) has been monitoring the Brazilian Legal Amazon deforestation through the PRODES project since 1988, providing yearly deforestation maps based on about 60 m spatial resolution. Additionally, INPE's Real Time Deforestation Detection System (DETER) has monthly indicating, based on high temporal resolution satellite data, where and when the forest is being felled. However, those monitoring processes are mainly based on visual interpretation, which is accurate but a hard and time consuming task. The Spectral-Temporal Analysis by Response Surface (STARS), which synthesizes the full information content of a multitemporal-multispectral remote sensing image dataset to represent the spectral variation over time of features on the Earth's surface, comes as an alternative for applications in land cover change detection, such as deforestation in the Brazilian Amazon. Thus, since deforestation process presents particular spectral changes over time, spectral-temporal response surfaces could be fitted to describe its change patterns, allowing to detect deforested areas. In this context, this work aims to apply the STARS to detect deforestation in the Brazilian Amazon, using Landsat-5 multitemporal-multispectral images. Four georeferenced images covering about 3.400 square kilometres within the Mato Grosso State, Brazil (13°17'S; 55°50'W to 14°20'S; 55°10'W) were used: one Multispectral Scanner (MSS) image from 1980 (bands 4, 5, 6 and 7 - 60 m spatial resolution); and three Thematic Mapper (TM) images from 1990, 2000 and 2010 (bands 1, 2, 3, 4, 5 and 7 - 30 m spatial resolution). The MSS image was resampled to 30 m to match the TM spatial resolution. All images were then used as input for STARS resulting in a Multi-Coefficient Image (MCI) with 10 synthetic bands formed by the 10 fitted coefficients of a Polynomial Trend Surface (PTS) model with degree equal to three. The MCI was used as input for a decision tree (DT

Land-use change (LUC) is known to impact local climate conditions through modifications of land-atmosphere interactions. Large-scale LUC, such as Amazon deforestation, could have a significant effect on the local and regional climates. The question remains as to what the global impact of large-scale LUC could be, as previous modeling studies have shown non-local responses due to Amazon deforestation. A common shortcoming in many previous modeling studies is the use of prescribed ocean conditions, which can act as a boundary condition to dampen the global response with respect to changes in the mean and variability. Using fully coupled modeling simulations with the Community Earth System Model version 1.2.0, the Amazon rainforest has been replaced with a distribution of representative tropical crops. Through the modifications of local land-atmosphere interactions, a significant change in the region, both at the surface and throughout the atmosphere, can be quantified. Accompanying these local changes are significant changes to the atmospheric circulation across all scales, thus modifying regional climates in other locales. Notable impacts include significant changes in precipitation, surface fluxes, basin-wide sea surface temperatures and ENSO behavior.

Prolonged drought stress combined with high leaf temperatures can induce programmed leaf senescence involving lipid peroxidation, and the loss of net carbon assimilation during early stages of tree mortality. Periodic droughts are known to induce widespread tree mortality in the Amazon rainforest, but little is known about the role of lipid peroxidation during drought-induced leaf senescence. In this study, we present observations of green leaf volatile (GLV) emissions during membrane peroxidation processes associated with the combined effects of high leaf temperatures and drought-induced leaf senescence from individual detached leaves and a rainforest ecosystem in the central Amazon. Temperature-dependent leaf emissions of volatile terpenoids were observed during the morning, and together with transpiration and net photosynthesis, showed a post-midday depression. This post-midday depression was associated with a stimulation of C₅ and C₆ GLV emissions, which continued to increase throughout the late afternoon in a temperature-independent fashion. During the 2010 drought in the Amazon Basin, which resulted in widespread tree mortality, green leaf volatile emissions (C₆ GLVs) were observed to build up within the forest canopy atmosphere, likely associated with high leaf temperatures and enhanced drought-induced leaf senescence processes. The results suggest that observations of GLVs in the tropical boundary layer could be used as a chemical sensor of reduced ecosystem productivity associated with drought stress. PMID:27135346

Prolonged drought stress combined with high leaf temperatures can induce programmed leaf senescence involving lipid peroxidation, and the loss of net carbon assimilation during early stages of tree mortality. Periodic droughts are known to induce widespread tree mortality in the Amazon rainforest, but little is known about the role of lipid peroxidation during drought-induced leaf senescence. In this study, we present observations of green leaf volatile (GLV) emissions during membrane peroxidation processes associated with the combined effects of high leaf temperatures and drought-induced leaf senescence from individual detached leaves and a rainforest ecosystem in the central Amazon. Temperature-dependent leaf emissions of volatile terpenoids were observed during the morning, and together with transpiration and net photosynthesis, showed a post-midday depression. This post-midday depression was associated with a stimulation of C5 and C6 GLV emissions, which continued to increase throughout the late afternoon in a temperature-independent fashion. During the 2010 drought in the Amazon Basin, which resulted in widespread tree mortality, green leaf volatile emissions (C6 GLVs) were observed to build up within the forest canopy atmosphere, likely associated with high leaf temperatures and enhanced drought-induced leaf senescence processes. The results suggest that observations of GLVs in the tropical boundary layer could be used as a chemical sensor of reduced ecosystem productivity associated with drought stress. PMID:27135346

Field endocrine studies providing new comparisons for inference into the evolutionary and ecological factors shaping organismal physiology are important, often yielding novel physiological insights. Here, we explored factors associated with the sex steroid hormone concentrations and adrenocortical response to capture stress in Hog Island boas (Boa constrictor imperator) in the Cayos Cochinos archipelago of Honduras to generate comparative field hormone data from a tropical reptile and test the island tameness hypothesis. Baseline concentrations of testosterone, corticosterone, estradiol, and progesterone were measured during the wet and dry seasons, and an acute stressor of 1 h in a cloth bag was used to assess the stress response. Plasma steroid concentrations in these snakes were generally low in comparison to other taxa. Higher testosterone concentrations in males and higher estradiol and corticosterone concentrations in females were observed during the wet season compared to the dry season, which may be indicative of mating activities and vitellogenesis during this period. Snakes displayed a 15-fold increase in corticosterone concentrations in response to capture stress, a rise that was not impacted by whether a snake had been captured during previous years. The adrenocortical stress response was greater in males and positively related to body temperature. We suggest that this system merits future inquiries into the physiology and behavior of B. c. imperator, particularly as a model for studying insular impacts on diverse life history characters. PMID:24769701

Quantifying age structure and tree growth rate of Amazonian forests is essential for understanding their role in the carbon cycle. Here, we use radiocarbon dating and direct measurement of diameter increment to document unexpectedly slow growth rates for trees from three locations spanning the Brazilian Amazon basin. Central Amazontrees, averaging only ≈1mm/year diameter increment, grow half as fast as those from areas with more seasonal rainfall to the east and west. Slow growth rates mean that trees can attain great ages; across our sites we estimate 17-50% of trees with diameter >10 cm have ages exceeding 300 years. Whereas a few emergent trees that make up a large portion of the biomass grow faster, small trees that are more abundant grow slowly and attain ages of hundreds of years. The mean age of carbon in living trees (60-110 years) is within the range of or slightly longer than the mean residence time calculated from C inventory divided by annual C allocation to wood growth (40-100 years). Faster C turnover is observed in stands with overall higher rates of diameter increment and a larger fraction of the biomass in large, fast-growing trees. As a consequence, forests can recover biomass relatively quickly after disturbance, whereas recovering species composition may take many centuries. Carbon cycle models that apply a single turnover time for carbon in forest biomass do not account for variations in life strategy and therefore may overestimate the carbon sequestration potential of Amazon forests. PMID:16339903

The objective of this task is to develop and demonstrate a mechanical, asbestos-removal system that can be remotely operated without a containment area. The technology, known as BOA, consists of a pipe-crawler removal head and a boom vehicle system with dual robots. BOA's removal head can be remotely placed on the outside of the pipe and can crawl along the pipe, removing lagging and insulation. The lagging and insulation is cut using a hybrid endmill water-jet cutter and then diced into 2-inch cube sections of ACM. These ACM sections are then removed from the pipe using a set of blasting fan- spray nozzles, vacuumed off through a vacuum hose, and bagged. Careful attention to vacuum and entrapment air flow ensures that the system can operate without a containment area while meeting local and federal standards for fiber count.

The BOA beamline at the Swiss spallation neutron source SINQ at Paul Scherrer Institut is a flexible instrument used mainly for testing novel techniques and devices for neutron scattering and optics, but, due to the large and relatively homogeneous field of view, it can be successfully used for experiments in the field of neutron imaging. The beamline allows also for the exploitation of advanced imaging concepts such as polarized neutron imaging and diffractive neutron imaging. In this paper we present the characterization of the BOA beamline in the light of its neutron imaging capabilities. We show also the different techniques that can be employed there as user-friendly plugins for non-standard neutron imaging experiments.

Orthoreoviruses have been associated with disease in reptiles, but have not previously been isolated from snakes with inclusion body disease (IBD). An orthoreovirus was isolated from a Boa constrictor diagnosed with IBD and then used to conduct a transmission study to determine the clinical importance of this virus. For the transmission study, 10 juvenile boas were experimentally infected with the isolated orthoreovirus and compared to 5 sham-infected control animals. Orthoreovirus was reisolated for a period of 18 wk after infection and weight gain was reduced in infected snakes. Histological examination showed a mild hepatitis in three of four virologically positive snakes up to 12 wk after infection. Results indicated that the orthoreovirus was moderately pathogenic, but, no evidence was found to indicate that it was the causal agent of IBD. In the light of the discovery of Arenaviruses in some snakes with IBD, it was proposed that orthoreoviruses may play a role in synergistic infection. PMID:25000715

Semen quality analysis constitutes a powerful tool to evaluate the fertility potential of males in threatened species. The Argentine boa constrictor or lampalagua (Boa constrictor occidentalis) is a threatened snake species and has been included in Appendix I of CITES. The objective of this work is to characterize the sperm of B. c. occidentalis on the bases of dynamic parameters to improve this species conservation. Dynamic parameters were measured in sperm samples using videomicroscopy and image analysis software. The sperm population showed a high degree of heterogeneity in velocity parameter values and 95% of the cells showed a linear pattern of movement. Studies in other species indicate that the number of motile spermatozoa and their movement speed is directly correlated with fertilization success. This work will help to establish basic parameter values for the evaluation of the reproductive potential of populations of B. c. occidentalis and to resolve questions referred to its reproductive strategies. PMID:16857223

The expansionist policy of the United States at the turn of the century widened the horizons of American anthropology. The International School of American Archaeology and Ethnology was one of the first attempts by American anthropologists to carry out systematic research in foreign lands. Motivated partly by a wish to strengthen the quality of American anthropology, Franz Boas succeeded in gaining the cooperation of several European and American institutions. The purpose of the school was to conduct rigorous anthropological investigations in Mexico. Obsessed with professionalizing the discipline, Boas failed to take into account the turbulent political climate of Mexico when planning the school. Although it did good work for a number of years (1910-1914), the school was broken up forever in 1914 because of the Mexican revolution. Attempts at resurrection failed for numerous reasons. PMID:332760

This view shows the confluence of the Amazon and the Topajos Rivers at Santarem, Brazil (2.0S, 55.0W). The Am,azon flows from lower left to upper right of the photo. Below the river juncture of the Amazon and Tapajos, there is considerable deforestation activity along the Trans-Amazon Highway.

Based on several key design criteria and site visits, we developed a Robot design and built a system which automatically strips the lagging and insulation from the pipes, and encapsulates them under complete vacuum operation. The system can operate on straight runs of piping in horizontal or vertical orientations. Currently we are limited to four-inch diameter piping without obstacles as well as a somewhat laborious emplacement and removal procedure. Experimental results indicated that the current robotic abatement process is sound yet needs to be further expanded and modified. One of the main discoveries was that a longitudinal cut to fully allow the paddles to dig in and compress the insulation off the pipe is essential. Furthermore, a different cutting method might be explored to alleviate the need for a deeper cut and to enable a combination of certain functions such as compression and cutting. Unfortunately due to a damaged mechanism caused by extensive testing, we were unable to perform vertical piping abatement experiments, but foresee no trouble in implementing them in the next proposed Phase. Other encouraging results have BOA removing asbestos at a rate of 4-5 ft./h compared to 3 ft./h for manual removal of asbestos with a 3-person crew. However, we feel confident that we can double the asbestos removal rate by improving cutting speed, and increasing the length of the BOA robot. The containment and vacuum system on BOA is able to achieve the regulatory requirement for airborne fiber emissions of 0.01 fibers/ccm/8-hr. shift. Currently, BOA weighs about 117 pounds which is more than a human is permitted to lift overhead under OSHA requirements (i.e., 25 pounds). We are considering designing the robot into two components (i.e., locomotor section and cutter/removal section) to aid human installation as well as incorporating composite materials. A more detailed list of all the technical modifications is given in this topical report.

In July 2015, fifteen research flights were conducted on a US Navy Twin Otter aircraft as part of the Biological and Oceanic Atmospheric Study (BOAS) campaign. The flights took place near the California coast at Monterey, to investigate the effects of sea surface temperature and algal blooms on oceanic particulate emissions, the diurnal mixing of urban pollution with other airmasses, and the impacts of biological aerosols on the California atmosphere. The aircraft's payload included an aerosol mass spectrometer (AMS), a differential mobility analyzer, a cloud condensation nuclei counter, a counterflow virtual impactor, a cloudwater collector, and two instruments designed to detect biological aerosols - a wideband integrated biological spectrometer and a SpinCon II - as well as a number of meteorology and aerosol probes, two condensation particle counters, and instruments to measure gas-phase CO, CO2, O3, and NOx. Here, we describe in depth the objectives and outcomes of BOAS and report preliminary results, primarily from the AMS. We detail the spatial characteristics and meteorological variability of speciated aerosol components over a strong and persistent bloom of Pseudo-Nitzschia, the harmful algae that cause 'red tide', and report newly identified AMS markers for biological particles. Finally, we compare these results with data collected during BOAS over urban, forested, and agricultural environments, and describe the mixing observed between oceanic and terrestrial airmasses.

The amount and spatial distribution of forest biomass in the Amazon basin is a major source of uncertainty in estimating the flux of carbon released from land-cover and land-use change. Direct measurements of aboveground live biomass (AGLB) are limited to small areas of forest inventory plots and site-specific allometric equations that cannot be readily generalized for the entire basin. Furthermore, there is no spaceborne remote sensing instrument that can measure tropical forest biomass directly. To determine the spatial distribution of forest biomass of the Amazon basin, we report a method based on remote sensing metrics representing various forest structural parameters and environmental variables, and more than 500 plot measurements of forest biomass distributed over the basin. A decision tree approach was used to develop the spatial distribution of AGLB for seven distinct biomass classes of lowland old-growth forests with more than 80% accuracy. AGLB for other vegetation types, such as the woody and herbaceous savanna and secondary forests, was directly estimated with a regression based on satellite data. Results show that AGLB is highest in Central Amazonia and in regions to the east and north, including the Guyanas. Biomass is generally above 300Mgha(sup 1) here except in areas of intense logging or open floodplains. In Western Amazonia, from the lowlands of Peru, Ecuador, and Colombia to the Andean mountains, biomass ranges from 150 to 300Mgha(sup 1). Most transitional and seasonal forests at the southern and northwestern edges of the basin have biomass ranging from 100 to 200Mgha(sup 1). The AGLB distribution has a significant correlation with the length of the dry season. We estimate that the total carbon in forest biomass of the Amazon basin, including the dead and below ground biomass, is 86 PgC with +/- 20% uncertainty.

Students love outdoor activities and will love them even more when they build confidence in their tree identification and measurement skills. Through these activities, students will learn to identify the major characteristics of trees and discover how the pace--a nonstandard measuring unit--can be used to estimate not only distances but also the…

Tree Amigos is a special cross-cultural program that uses trees as a common bond to bring the people of the Americas together in unique partnerships to preserve and protect the shared global environment. It is a tangible program that embodies the philosophy that individuals, acting together, can make a difference. This resource book contains…

A coupled numerical model of the global atmosphere and biosphere has been used to assess the effects of Amazon deforestation on the regional and global climate. When the tropical forests in the model were replaced by degraded grass (pasture), there was a significant increase in surface temperature and a decrease in evapotranspiration and precipitation over Amazonia. In the simulation, the length of the dry season also increased; such an increase could make reestablishment of the tropical forests after massive deforestation particularly difficult. 31 refs., 3 figs., 2 tabs.

Coupled climate-carbon cycle models indicate that Amazon forests may be vulnerable to drought, with some predicting drought-induced collapse of the Amazon forest and conversion to savanna, under future climate change. While much progress has been made in understanding tropical forest drought response, a holistic picture encompassing both short-term physiological (e.g., photosynthesis) and longer term demographic responses (e.g., mortality) remains elusive, mainly due to the rarity of coinciding relevant measurements and drought events. Here we address this knowledge gap by analyzing the response of an eastern Amazonian forest at both timescales to the El Nino-induced drought of late 2009 / early 2010 (distinct from the Atlantic SST-induced drought to hit Western Amazonia in mid/late 2010) using eddy flux measurements of carbon exchange and periodic tree demographic surveys. We partitioned the drought response of GPP into environmental (light, vapor pressure deficit (VPD), diffuse light) and biological responses. Based on environmental conditions alone (high VPD), we expected GPP to be 1-2 umol CO2 m-2 s-1 less than average during drought. In contrast, GPP was elevated by 2-4 umol CO2 m-2 s-1 above this expected negative response over a period of ~45 days, consistent with previously observed green-up from satelliltes during the 2005 Amazon drought. At the same time, drought significantly elevated 2009-2011 tree mortality, by ~50% above that during non-drought periods, consistent with a quantitative drought-mortality relationship reported for other Amazon forests. This work suggests that observations of "green-up" of forest canopies during drought may be consistent with subsequent drought-induced tree mortality, in contrast to expectation. More importantly, it highlights endogenous biological regulation of photosynthesis as an important mechanism, neglected by models, in mediating drought responses in tropical forests.

The endemic Puerto Rican boa (Epicrates inornatus) has spent 42 years on the Endangered Species List with little evidence for recovery. One significant impediment to effective conservation planning has been a lack of knowledge of the distribution of genetic variability in the species. It has previously been suggested that boas might best be protected around caves that harbor large populations of bats. Prior study has found Puerto Rican boas at relatively high densities in and around bat caves, which they use both to feed and seek shelter. However, it is unknown whether these behaviorally distinctive populations represent a distinct evolutionary lineage, or (conversely) whether caves harbor representative genetic diversity for the species across the island. We provide the first genetic study of the Puerto Rican boa, and we examine and compare genetic diversity and divergence among two cave populations and two surface populations of boas. We find three haplogroups and an apparent lack of phylogeographic structure across the island. In addition, we find that the two cave populations appear no less diverse than the two surface populations, and harbor multiple mtDNA lineages. We discuss the conservation implications of these findings, including a call for the immediate protection of the remaining cave-associated populations of boas. PMID:23691110

The Amazon molly, Poecilia formosa, a member of the Poeciliidae family, is a freshwater fish reproducing through gynogenesis. The complete mitochondrial genome of the P. formosa is determined for the first time in this study. It is a circular molecule of 16 542 bp in length, including 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and 1 putative control region. The overall base composition of the genome is A (29.59%), T (27.57%), C (28.27%), and G (14.57%) with 42.84% GC content, which is lower than the content of AT. Most protein-coding genes started with a traditional ATG codon except for COX2, ND5 and ND6, which initiated with ATA, GTG and TTA, respectively. The stop codon was a single T- - base in most of the protein-coding genes, but COX2 and ATP8 both employed TAA and ND2 terminated with AGG codon. Phylogenetic tree was constructed based on the complete mitogenome of P. formosa and closely related 11 chondrichthian species to assess their phylogenic relationship and evolution. The complete mitochondrial genome of the amazon molly would help to study the evolution of Poeciliidae family. PMID:26260185

Despite orders of magnitude difference in atmospheric reactivity and great diversity in biological functioning, little is known about monoterpene speciation in tropical forests. Here we report vertically resolved ambient air mixing ratios for 12 monoterpenes in a central Amazon rainforest including observations of the highly reactive cis-β-ocimene (160 ppt), trans-β-ocimene (79 ppt), and terpinolene (32 ppt) which accounted for an estimated 21% of total monoterpene composition yet 55% of the upper canopy monoterpene ozonolysis rate. All 12 monoterpenes showed a mixing ratio peak in the upper canopy, with three demonstrating subcanopy peaks in 7 of 11 profiles. Leaf level emissionsmore » of highly reactive monoterpenes accounted for up to 1.9% of photosynthesis confirming light-dependent emissions across several Amazontree genera. These results suggest that highly reactive monoterpenes play important antioxidant roles during photosynthesis in plants and serve as near-canopy sources of secondary organic aerosol precursors through atmospheric photooxidation via ozonolysis.« less

Given the importance of Amazon rainforest in the global carbon and hydrological cycles, there is a need to use parameterized and validated ecosystem gas exchange and vegetation models for this region in order to adequately simulate present and future carbon and water balances. Recent research has found major differences in above-ground net primary productivity (ANPP), above ground biomass and tree dynamics across Amazonia. West Amazonia is more dynamic, with younger trees, higher stem growth rates and lower biomass than central and eastern Amazon (Baker et al. 2004; Malhi et al. 2004; Phillips et al. 2004). A factor of three variation in above-ground net primary productivity has been estimated across Amazonia by Malhi et al. (2004). Different hypotheses have been proposed to explain the observed spatial variability in ANPP (Malhi et al. 2004). First, due to the proximity to the Andes, sites from western Amazonia tend to have richer soils than central and eastern Amazon and therefore soil fertility could possibly be highly related to the high wood productivity found in western sites. Second, if GPP does not vary across the Amazon basin then different patterns of carbon allocation to respiration could also explain the observed ANPP gradient. However since plant growth depends on the interaction between photosynthesis, transport of assimilates, plant respiration, water relations and mineral nutrition, variations in plant gross photosynthesis (GPP) could also explain the observed variations in ANPP. In this study we investigate whether Amazon GPP can explain variations of observed ANPP. We use a sun and shade canopy gas exchange model that has been calibrated and evaluated at five rainforest sites (Mercado et al. 2009) to simulate gross primary productivity of 50 sites across the Amazon basin during the period 1980-2001. Such simulation differs from the ones performed with global vegetation models (Cox et al. 1998; Sitch et al. 2003) where i) single plant functional

The Peruvian Amazon is an important arena in global efforts to promote sustainable logging in the tropics. Despite recent efforts to achieve sustainability, such as provisions in the US-Peru Trade Promotion Agreement, illegal logging continues to plague the region. We present evidence that Peru's legal logging concession system is enabling the widespread illegal logging via the regulatory documents designed to ensure sustainable logging. Analyzing official government data, we found that 68.3% of all concessions supervised by authorities were suspected of major violations. Of the 609 total concessions, nearly 30% have been cancelled for violations and we expect this percentage to increase as investigations continue. Moreover, the nature of the violations indicate that the permits associated with legal concessions are used to harvest trees in unauthorized areas, thus threatening all forested areas. Many of the violations pertain to the illegal extraction of CITES-listed timber species outside authorized areas. These findings highlight the need for additional reforms.

The Peruvian Amazon is an important arena in global efforts to promote sustainable logging in the tropics. Despite recent efforts to achieve sustainability, such as provisions in the US-Peru Trade Promotion Agreement, illegal logging continues to plague the region. We present evidence that Peru's legal logging concession system is enabling the widespread illegal logging via the regulatory documents designed to ensure sustainable logging. Analyzing official government data, we found that 68.3% of all concessions supervised by authorities were suspected of major violations. Of the 609 total concessions, nearly 30% have been cancelled for violations and we expect this percentage to increase as investigations continue. Moreover, the nature of the violations indicate that the permits associated with legal concessions are used to harvest trees in unauthorized areas, thus threatening all forested areas. Many of the violations pertain to the illegal extraction of CITES-listed timber species outside authorized areas. These findings highlight the need for additional reforms. PMID:24743552

This program builds upon the monitoring and calibration of the FGSs. The list of proposals, cycles, and the order in which the alignment is checked is given below.11878->12399->12781->13171C17->C18->C19->C20STIS->WFC3->ACS->COSVisit 01 of the C20 SIAF verification program, 13171, executed on Mar 2, 2012, and Visit 02 is scheduled for Sep 1, 2103. This program performs a PSA/MIRRORA ACQ/IMAGE on a target that should already be centered in the aperture. This verifies the COS NUV PSA aperture position in the SIAF. After this PSA+MIRRORA ACQ/IMAGE, a PSA+MIRRORB ACQ/IMAGE is then performed. This exposure bootstraps the PSA+MIRRORB centering to the PSA+MIRROR SIAF verification. This allows us to monitor the properties of the PSA+MIRRORB image in a controlled way on a centered target. No spectra are taken in 13171 due to time constrains.This program extends the SIAF verification of 13171 to the other two ACQ/IMAGE combinations {BOA+MIRRORA & BOA+MIRRORB} by bootstraping from the PSA+MIRRORB verification of 13171.Visit 1 of this program begins with a PSA+MIRRORB NUV ACQ/IMAGE followed by a BOA+MIRRORA ACQ/IMAGE. Both observations are high S/N to get the most accurate centering information possible. The program then takes a PSA+MIRRORB IMAGE to ensure that we are still properly centered. We prefer that Visit 01 of this program executes after Visit 02 of 13171, but more than 17, but less than 45 days after to ensure that no long term instrument or telescope focus changes impart our results.After the Imaging verification Visit 1 of this program will obtain a S/N > 60 NUV spectrum using the most popular NUV grating {G230L, G185M, & G285M}, and FUV Spectra using G130M/1309 and G140L/1280. This allows the direct verification of the NUV and FUV WCA-to-PSA cross-dispersion offsets used by ACQ/PEAKXD.Visit 02 of this program follows the style of Visit 01, but the initial ACQ/IMAGE is a BOA+MIRRORA and the second ACQ/IMAGE is BOA/MIRRORB. Visit 02 should occur after Visit 01 by

This program builds upon the monitoring and calibration of the FGSs (13616 - HST Cycle 21 Focal Plane Calibration (SI-FGS Alignment)). HST 13616 performs back-to-back PSA/MIRRORA & PSA/MIRRORB ACQ/IMAGES, from which all the results herein are bootstrapped.The list of proposals, cycles, and the order in which the alignment is checked is given below. 11878->12399->12781->13171->13616 C17->C18 ->C19->C20->C21 STIS->WFC3->ACS->COSThis program will be repeated every cycle and we will once again use it's COS exposures as the baseline for this program.This program performs a PSA/MIRRORA ACQ/IMAGE on a target that should already be centered in the aperture. This verifies the COS NUV PSA aperture position in the SIAF. After this PSA+MIRRORA ACQ/IMAGE, a PSA+MIRRORB ACQ/IMAGE is then performed. This exposure bootstraps the PSA+MIRRORB centering to the PSA+MIRROR SIAF verification. This allows us to monitor the properties of the PSA+MIRRORB image in a controlled way on a centered target. No spectra are taken in 13616 due to time constraints.This program extends the SIAF verification of 13616 to the other two ACQ/IMAGE combinations (BOA+MIRRORA & BOA+MIRRORB) by bootstraping from the PSA+MIRRORB verification of 13616.Visit 1 of this program begins with a PSA+MIRRORB NUV ACQ/IMAGE followed by a BOA+MIRRORA ACQ/IMAGE. Both observations are high S/N to get the most accurate centering information possible. The program then takes a PSA+MIRRORB IMAGE to ensure that we are still properly centered. We prefer that Visit 01 of this program executes within 45 days of Visit 02 of 13616, to ensure that no long term instrument or telescope focus changes impart our results.After the Imaging verification , Visit 1 of this program will obtain a S/N > 60 NUV spectrum using the most popular NUV grating (G230L, G185M, & G285M), and FUV Spectra using G130M/1309 and G140L/1280. This allows the direct verification of the NUV and FUV WCA-to-PSA cross-dispersion offsets used by ACQ/PEAKXD.Visit 02 of

New information obtained with NASA's Coastal Zone Color Scanner and with drifting buoys reveals that the discharge of the Amazon is carried offshore around a retroflection of the North Brazil Current and into the North Equatorial Countercurrent towards Africa between June and January each year. From about February to May, the countercurrent and the retroflection weaken or vanish, and Amazon water flows northwestward toward the Caribbean Sea.

Deforestation and agricultural land uses provide a consistent source of ignitions along the Amazon frontier during the dry season. The risk of understory fires in Amazon forests is amplified by drought conditions, when fires at the forest edge may spread for weeks before rains begin. Fire activity also impacts the regional response of intact forests to drought through diffuse light effects and nutrient redistribution, highlighting the complexity of feedbacks in this coupled human and natural system. This talk will focus on recent advances in our understanding of fire-climate feedbacks in the Amazon, building on research themes initiated under NASA's Large-scale Biosphere-Atmosphere Experiment in Amazonia (LBA). NASA's LBA program began in the wake of the 1997-1998 El Niño, a strong event that exposed the vulnerability of Amazon forests to drought and fire under current climate and projections of climate change. With forecasts of another strong El Niño event in 2015-2016, this talk will provide a multi-scale synthesis of Amazon forest responses to drought and fire based on field measurements, airborne lidar data, and satellite observations of fires, rainfall, and terrestrial water storage. These studies offer new insights into the mechanisms governing fire season severity in the southern Amazon and regional variability in carbon losses from understory fires. The contributions from remote sensing to our understanding of drought and fire in Amazon forests reflect the legacy of NASA's LBA program and the sustained commitment to interdisciplinary research across the Amazon region.

The Amazon rain forest sustains the world's highest tree diversity, but it remains unclear why some clades of trees are hyperdiverse, whereas others are not. Using dated phylogenies, estimates of current species richness and trait and demographic data from a large network of forest plots, we show that fast demographic traits – short turnover times – are associated with high diversification rates across 51 clades of canopy trees. This relationship is robust to assuming that diversification rates are either constant or decline over time, and occurs in a wide range of Neotropical tree lineages. This finding reveals the crucial role of intrinsic, ecological variation among clades for understanding the origin of the remarkable diversity of Amazonian trees and forests. PMID:24589190

Coadaptation predicts a match between the thermal physiology and thermoregulatory behavior of reptiles. We tested this prediction by studying the digestive biology of rubber boas (Charina bottae). We measured the thermal dependence of gastric digestive rate and passage rate in rubber boas from 10 degrees C to 35 degrees C. We examined the effect of digestion on their thermal preference by measuring the temperatures of C. bottae in a thermal gradient before and after feeding. While the passage rates calculated from the body temperatures of digesting snakes were higher than the passage rates calculated from the body temperatures of nondigesting snakes, there was no difference in calculated digestive rates. These results indicate that the thermoregulatory behavior of C. bottae may be more tightly correlated with factors affecting passage rate than with digestive rate alone. Results of simulating the constraints of the thermal environment on the digestive biology of C. bottae showed that digestion would take more than twice as long in the spring as in the summer. In addition, during the summer, snakes thermoregulating as digesting snakes would pass food 12% faster than those thermoregulating as nondigesting snakes. These results demonstrate how interpretation of laboratory studies can be improved when combined with measurements of appropriate environmental conditions. PMID:9231403

Arboreal habitats pose unique challenges for locomotion as a result of their narrow cylindrical surfaces and discontinuities between branches. Decreased diameter of branches increases compliance, which can pose additional challenges, including effects on stability and energy damping. However, the combined effects of substrate diameter and compliance are poorly understood for any animal. We quantified performance, kinematics and substrate deformation while boa constrictors (Boa constrictor) climbed vertical ropes with three diameters (3, 6 and 9 mm) and four tensions (0.5, 1.0, 1.5 and 2.0 body weights). Mean forward velocity decreased significantly with both decreased diameter and increased compliance. Both diameter and compliance had numerous effects on locomotor kinematics, but diameter had larger and more pervasive effects than compliance. Locomotion on the largest diameter had a larger forward excursion per cycle, and the locomotor mode and gripping strategy differed from that on the smaller diameters. On larger diameters, snakes primarily applied opposing forces at the same location on the rope to grip. By contrast, on smaller diameters forces were applied in opposite directions at different locations along the rope, resulting in increased rope deformation. Although energy is likely to be lost during deformation, snakes might use increased surface deformation as a strategy to enhance their ability to grip. PMID:21113006

Michigan State University has been conducting research on growth control of woody plants with emphasis on commercial plantations. The objective was to develop the optimum levels for the major factors that affect tree seedling growth and development so that high quality plants can be produced for a specific use. This article describes the accelerated-optimal-growth (AOG) concept, describes precautions to take in its application, and shows ways to maximize the potential of AOG for producing ornamental trees. Factors considered were container growing system; protective culture including light, temperature, mineral nutrients, water, carbon dioxide, growth regulators, mycorrhizae, growing media, competition, and pests; size of seedlings; and acclamation. 1 table. (DP)

Included are an illustrated student reader, "The Story of Trees," a leaders' guide, and a large tree chart with 37 colored pictures. The student reader reviews several aspects of trees: a definition of a tree; where and how trees grow; flowers, pollination and seed production; how trees make their food; how to recognize trees; seasonal changes;…

TreeView provides a simple way to view the phylogenetic trees produced by a range of programs, such as PAUP*, PHYLIP, TREE-PUZZLE, and ClustalX. While some phylogenetic programs (such as the Macintosh version of PAUP*) have excellent tree printing facilities, many programs do not have the ability to generate publication quality trees. TreeView addresses this need. The program can read and write a range of tree file formats, display trees in a variety of styles, print trees, and save the tree as a graphic file. Protocols in this unit cover both displaying and printing a tree. Support protocols describe how to download and install TreeView, and how to display bootstrap values in trees generated by ClustalX and PAUP*. PMID:18792942

The Amazon Basin plays key roles in the carbon and water cycles, climate change, atmospheric chemistry, and biodiversity. It already has been changed significantly by human activities, and more pervasive change is expected to occur in the next decades. It is therefore essential to establish long-term measurement sites that provide a baseline record of present-day climatic, biogeochemical, and atmospheric conditions and that will be operated over coming decades to monitor change in the Amazon region as human perturbations increase in the future. The Amazon Tall Tower Observatory (ATTO) has been set up in a pristine rain forest region in the central Amazon Basin, about 150 km northeast of the city of Manaus. An ecological survey including a biodiversity assessment has been conducted in the forest region surrounding the site. Two 80 m towers have been operated at the site since 2012, and a 325 m tower is nearing completion in mid-2015. Measurements of micrometeorological and atmospheric chemical variables were initiated in 2012, and their range has continued to broaden over the last few years. The meteorological and micrometeorological measurements include temperature and wind profiles, precipitation, water and energy fluxes, turbulence components, soil temperature profiles and soil heat fluxes, radiation fluxes, and visibility. A tree has been instrumented to measure stem profiles of temperature, light intensity, and water content in cryptogamic covers. The trace gas measurements comprise continuous monitoring of carbon dioxide, carbon monoxide, methane, and ozone at 5 to 8 different heights, complemented by a variety of additional species measured during intensive campaigns (e.g., VOC, NO, NO2, and OH reactivity). Aerosol optical, microphysical, and chemical measurements are made above the canopy as well as in the canopy space. They include light scattering and absorption, aerosol fluorescence, number and volume size distributions, chemical composition, cloud

Boa Vista, the easternmost island in the Cape Verde archipelago, consists of volcanic products, minor intrusions and a thin partial sedimentary cover. The first 15 age results from 40Ar/ 39Ar incremental heating analysis of groundmass separates from volcanic and plutonic rocks from Boa Vista are presented. The combination of age results and field observations demonstrates that the volcanic activity that formed the island occurred in three main stages: (1) > 16 Ma, (2) 15-12.5 Ma and (3) 9.5-4.5 Ma. The first stage, restricted to the north eastern part of the island, is dominated by ankaramitic lavas. The second stage, consisting of evolved lavas of phonolitic-trachytic compositions and nepheline syenites, makes up large central parts of the island. The large volume of evolved rocks and the extended eruption period of several Ma make stage 2 in Boa Vista unique to Cape Verde. Mainly basanites and nephelinites were erupted during the third stage, initially dominated by eruption of subaerial mafic lavas around 9 Ma. Pillow lavas are erupted around 7 Ma whereupon dominantly subaerial mafic lavas were erupted. Stage 3 saw volcanism in many centres distributed mainly along the present coastline and with activity partly overlapping in time. The volcanic evolution of Boa Vista constrains the initiation of volcanic activity in the Cape Verde archipelago to the eastern islands. Major and trace element geochemistry of 160 volcanic and plutonic rocks representing the entire exposed chronological sequence on Boa Vista is presented, revealing an extremely well developed Daly Gap. Only a little was modified from the mafic magmas that rose in small batches from the mantle. Compositional variation distinguishes each volcanic complex and was to a large extent present in the mantle melts. The highly evolved stage 2 phonolites and trachytes are related through the fractional crystallization of three compositionally distinct magmas. Two of these may have been derived by crystal

Previous modeling studies with atmospheric general circulation models and basic land surface schemes to balance energy and water budgets have shown that by removing the natural vegetation over the Amazon, the region's climate becomes warmer and drier. In this study we use a fully coupled Earth system model and replace tropical forests by a distribution of six common tropical crops with variable planting dates, physiological parameters and irrigation. There is still general agreement with previous studies as areal averages show a warmer (+1.4 K) and drier (-0.35 mm day-1) climate. Using an interactive crop model with a realistic crop distribution shows that regions of vegetation change experience different responses dependent upon the initial tree coverage and whether the replacement vegetation is irrigated, with seasonal changes synchronized to the cropping season. Areas with initial tree coverage greater than 80 % show an increase in coupling with the atmosphere after deforestation, suggesting land use change could heighten sensitivity to climate anomalies, while irrigation acts to dampen coupling with the atmosphere.

Previous modeling studies with atmospheric general circulation models and basic land surface schemes to balance energy and water budgets have shown that by removing the natural vegetation over the Amazon, the region's climate becomes warmer and drier. In this study we use a fully coupled Earth System Model and replace tropical forests by a distribution of six common tropical crops with variable planting dates, physiological parameters and irrigation. There is still general agreement with previous studies as areal averages show a warmer (+1.4 K) and drier (-0.35 mm day-1) climate. Using an interactive crop model with a realistic crop distribution shows that regions of vegetation change experience different responses dependent upon the initial tree coverage and whether the replacement vegetation is irrigated, with seasonal changes synchronized to the cropping season. Areas with initial tree coverage greater than 80% show an increase in coupling with atmosphere after deforestation, suggesting land use change could heighten sensitivity to climate anomalies, while irrigation acts to dampen coupling with atmosphere.

Estimating the carbon balance of a landscape is challenging. A key problem is determining whether or not measurements made in plots are representative of the carbon state of a larger region. A key parameter for calculating landscape carbon balance is the return frequency of episodic disturbances. If disturbances are clustered and occur more frequently than the time required for biomass recovery, a spatial mixture of patches in different stages of recovery occurs. Under these shifting steady-state mosaic conditions, quantifying the mean state of ecosystem attributes such as carbon balance or tree species diversity is difficult. In this study, satellite remote sensing (Landsat) was coupled with field investigations to create ~25 year landscape-scale disturbance chronosequence for old-growth forest in the Central Amazon. The detected disturbances were caused by strong storms which resulted in tree mortality events ranging from small clusters of 7-10 downed trees, to large contiguous blowdowns larger than 30 ha in size. Using the chronosequence, a cumulative probability distribution function was developed, which followed a power law, and was used to parameterize a forest carbon balance model. Results demonstrate that for power law exponents less than about 2.0, the spatial scale at which forest carbon balance establishes is much larger than generally expected. Ultimately, an increase in wind disturbance frequency and/or intensity with a warming climate has the potential to cause a net loss of carbon from Amazon forests to the atmosphere.

In 1999, Steve Coffman proposed that libraries form a single interlibrary loan based entity patterned after Amazon.com. This study examined the suitability of Amazon.com's Web interface and record enhancements for academic libraries. Amazon.com could not deliver circulating monographs in the University at Albany Libraries' collection quickly…

Expansion of the cattle and soy industries in the Amazon basin has increased deforestation rates and will soon push all-weather highways into the region's core. In the face of this growing pressure, a comprehensive conservation strategy for the Amazon basin should protect its watersheds, the full range of species and ecosystem diversity, and the stability of regional climates. Here we report that protected areas in the Amazon basin-the central feature of prevailing conservation approaches-are an important but insufficient component of this strategy, based on policy-sensitive simulations of future deforestation. By 2050, current trends in agricultural expansion will eliminate a total of 40% of Amazon forests, including at least two-thirds of the forest cover of six major watersheds and 12 ecoregions, releasing 32 +/- 8Pg of carbon to the atmosphere. One-quarter of the 382 mammalian species examined will lose more than 40% of the forest within their Amazon ranges. Although an expanded and enforced network of protected areas could avoid as much as one-third of this projected forest loss, conservation on private lands is also essential. Expanding market pressures for sound land management and prevention of forest clearing on lands unsuitable for agriculture are critical ingredients of a strategy for comprehensive conservation.

Expansion of the cattle and soy industries in the Amazon basin has increased deforestation rates and will soon push all-weather highways into the region's core. In the face of this growing pressure, a comprehensive conservation strategy for the Amazon basin should protect its watersheds, the full range of species and ecosystem diversity, and the stability of regional climates. Here we report that protected areas in the Amazon basin--the central feature of prevailing conservation approaches--are an important but insufficient component of this strategy, based on policy-sensitive simulations of future deforestation. By 2050, current trends in agricultural expansion will eliminate a total of 40% of Amazon forests, including at least two-thirds of the forest cover of six major watersheds and 12 ecoregions, releasing 32 +/- 8 Pg of carbon to the atmosphere. One-quarter of the 382 mammalian species examined will lose more than 40% of the forest within their Amazon ranges. Although an expanded and enforced network of protected areas could avoid as much as one-third of this projected forest loss, conservation on private lands is also essential. Expanding market pressures for sound land management and prevention of forest clearing on lands unsuitable for agriculture are critical ingredients of a strategy for comprehensive conservation. PMID:16554817

"Understory fires" that burn the floor of standing forests are one of the most important types of forest impoverishment in the Amazon, especially during the severe droughts of El Nino Southern Oscillation (ENSO) episodes. However, we are aware of no estimates of the areal extent of these fires for the Brazilian Amazon and, hence, of their contribution to Amazon carbon fluxes to the atmosphere. We calculated the area of forest understory fires for the Brazilian Amazon region during an El Nino (1998) and a non El Nino (1995) year based on forest fire scars mapped with satellite images for three locations in eastern and southern Amazon, where deforestation is concentrated. The three study sites represented a gradient of both forest types and dry season severity. The burning scar maps were used to determine how the percentage of forest that burned varied with distance from agricultural clearings. These spatial functions were then applied to similar forest/climate combinations outside of the study sites to derive an initial estimate for the Brazilian Amazon. Ninety-one percent of the forest area that burned in the study sites was within the first kilometer of a clearing for the non ENSO year and within the first four kilometers for the ENSO year. The area of forest burned by understory forest fire during the severe drought (ENSO) year (3.9 millions of hectares) was 13 times greater than the area burned during the average rainfall year (0.2 million hectares), and twice the area of annual deforestation rate. Dense forest was, proportionally, the forest area most affected by understory fires during the El Nino year, while understory fires were concentrated in transitional forests during the year of average rainfall. Our estimate of aboveground tree biomass killed by fire ranged from 0.06 Pg to 0.38 Pg during the ENSO and from 0,004 Pg to 0,024 Pg during the non ENSO.

The island of Boa Vista is one of the oceanic islands with the largest amount of felsic rocks reported in the world (50% of the total outcropping igneous rocks of Boa Vista). The felsic rocks are trachytes and phonolites generated within the second main stage of the volcanic activity that lasted about four million years.

The ecology, feeding habits and sexual dimorphism in Arabian Sand Boa, Eryx jayakari from the Central region of Saudi Arabia, were studied. In this study the E. jayakari was recorded for the first time from several sites. Significant differences were noted in total length of body and tail, and body diameter of male and female. The females were of larger size. The mean number of the dorsal body scales, ventrals and subcaudal for both sexes were not significantly different. The mean number of the dorsal body scales, ventral body scales and subcaudal scales for the females was 43, 169 and 18 scales which were not significantly different from respectively ones in males 42, 168 and 18 scales. Frequent prey consumed were lizards (50%), rodents (25%) and arthropods (12.5%). PMID:25313272

As ectothermic animals, snakes depend exclusively on the environment for proper temperature maintenance, which may greatly influence their activity. Twenty-five adult Boa constrictor amarali snakes maintained in captivity were used to determine the influence of seasons on their hematologic values and electrophoretic profile of hemoglobin. A complete blood cell count (CBC) and examination for hemoparasites were performed in the summer and winter of 2004. Hemoglobin was stored for later electrophoresis. Significant differences (P < 0.05) were obtained in RBC, WBC, lymphocyte, thrombocyte, and monocyte counts, demonstrating the importance of the period of the year in the interpretation of reference values in these animals. Two snakes were detected with blood parasites (Hepatozoon sp.) in the winter and four in the summer, although it appears that their presence did not cause any significant alterations in the CBC. The electrophoretic analysis of the samples demonstrated two-four hemoglobin bands in this species. PMID:17315433

Tree climbing offers a safe, inexpensive adventure sport that can be performed almost anywhere. Using standard procedures practiced in tree surgery or rock climbing, almost any tree can be climbed. Tree climbing provides challenge and adventure as well as a vigorous upper-body workout. Tree Climbers International classifies trees using a system…

Abstract Problem In 2010, dengue virus (DENV) serotype–4 was detected during a dengue outbreak in the Amazonian city of Boa Vista. At that time Brazil was already endemic for DENV-1, DENV-2 and DENV-3. This was the first time DENV-4 was observed in the country after it was initially detected and eliminated in 1981. Approach To hinder the spread of DENV-4 throughout Brazil, standard vector control measures were intensified. Vector control professionals visited 56 837 households in 22 out of 31 districts of Boa Vista, to eliminate mosquito-breeding sites. Water storage containers were treated with the larvicide diflubenzuron, and deltamethrin was sprayed for adult Aedes aegypti mosquitoes. Fifteen days later, a second larvae survey and additional deltamethrin applications were performed. Local setting In Brazil, dengue vector control is managed at all three government levels. Regular surveillance of Aedes aegypti is done four to six times a year to strengthen mosquito control activities in areas with high-vector density. Educational dengue control campaigns in communities are scarce, especially between outbreaks. Relevant changes In spite of extensive implementation of all standard control actions recommended by the Brazilian dengue control programme, only a slight decrease in mosquito density was detected. Lessons learnt There is a need to redesign all levels of dengue control. Public consultation and engagement, behaviour change and actions that go beyond technical impositions are required. Vector control programme managers need to reflect on what constitutes good practices and whether intermittent information campaigns are effective measures for dengue prevention and control. PMID:25378760

American Indian ethnographer and linguist Ella Cara Deloria and African American folklorist and writer Zora Neale Hurston did fieldwork for Franz Boas, the father of modern anthropology. Both were shocked by how American racism empowered white people's historical actions. By correcting stereotypes through their work, they reasserted the role of…

A boa constrictor was presented with a short oblique compound fracture of the rostral third of the right maxilla. The fracture was reduced and biomaterial was placed around the fracture. A computed tomography scan at 1.5 mo post-surgery showed that the fracture had healed with slight displacement of the bone fragments. PMID:21629425

The air flow pattern expected around a cylindrical object such as a tree in slow wind, is predicted from fluid mechanics to have areas of faster flow (upwind) and slower recirculating flow with eddies (downwind). An organism located on the surface of a tree would experience different flow depending on its circumferential position. If that organism was searching for a chemical signal, such as a pheromone plume, it might maximize its probability of chemodetection by placing itself in areas of greatest flow speed (the upwind surface of the cylinder, i.e., in front of the separation points). We tested whether wood cockroaches in the genus Parcoblatta exhibit such upwind positioning; they live in forests, and males actively fly from tree to tree, while searching for females releasing sex pheromone. In contrast to an expectation of upwind preference, male cockroaches were evenly distributed around trees relative to upwind (measured with a novel "feather boa" flow visualization technique), even though the wind direction was relatively steady. We investigated whether sex pheromone could be detected at any location around a cylindrical surface in a laboratory flow chamber by using Bombyx mori wing fanning as a bioassay. Although upwind moths arrayed on the surface detected pheromone more rapidly, pheromone detection occurred at least a third of the time at any position, which could explain the even distribution of Parcoblatta males around trees. PMID:17252213

The Amazon, the world's largest river, discharges enough water into the sea each day to provide fresh water to the City of New York for over 9 years. Its flow accounts for about 15 percent of all the fresh water discharged into the oceans by all the rivers of the world. By comparison, the Amazon's flow is over 4 times that of the Congo River, the world's second largest river. And it is 10 times that of the Mississippi, the largest river on the North American Continent.

Forest inventory studies in the Amazon indicate a large terrestrial carbon sink. However, field plots may fail to represent forest mortality processes at landscape-scales of tropical forests. Here we characterize the frequency distribution of disturbance events in natural forests from 0.01 ha to 2,651 ha size throughout Amazonia using a novel combination of forest inventory, airborne lidar and satellite remote sensing data. We find that small-scale mortality events are responsible for aboveground biomass losses of ~1.7 Pg C y(-1) over the entire Amazon region. We also find that intermediate-scale disturbances account for losses of ~0.2 Pg C y(-1), and that the largest-scale disturbances as a result of blow-downs only account for losses of ~0.004 Pg C y(-1). Simulation of growth and mortality indicates that even when all carbon losses from intermediate and large-scale disturbances are considered, these are outweighed by the net biomass accumulation by tree growth, supporting the inference of an Amazon carbon sink. PMID:24643258

Old-growth forest ecosystems comprise a mosaic of patches in different successional stages, with the fraction of the landscape in any particular state relatively constant over large temporal and spatial scales. Tropical forest studies commonly assume that plots covering only a small fraction of the landscape representatively sample this mosaic, and that departures from steady-state represent trends. Here a critical test of this equilibrium assumption for a Central Amazon old-growth forest landscape is carried out by combining extensive forest field plot data, remote sensing analysis to generate disturbance probability distribution functions, and simulation modeling to place plot-level results into a landscape context. Results show that succession-inducing disturbances had a return frequency of ~100 years, and that these episodic events have been poorly sampled by existing forest sample plots. Overall, key ecosystem attributes of small patches are expected to constantly change in the Central Amazon, and long significant trends can result from purely stochastic processes. The role of episodic disturbances will be discussed in terms of Amazon forest carbon balance, and regional tree diversity patterns.

Forest inventory studies in the Amazon indicate a large terrestrial carbon sink. However, field plots may fail to represent forest mortality processes at landscape-scales of tropical forests. Here we characterize the frequency distribution of disturbance events in natural forests from 0.01 ha to 2,651 ha size throughout Amazonia using a novel combination of forest inventory, airborne lidar and satellite remote sensing data. We find that small-scale mortality events are responsible for aboveground biomass losses of ~1.7 Pg C y-1 over the entire Amazon region. We also find that intermediate-scale disturbances account for losses of ~0.2 Pg C y-1, and that the largest-scale disturbances as a result of blow-downs only account for losses of ~0.004 Pg C y-1. Simulation of growth and mortality indicates that even when all carbon losses from intermediate and large-scale disturbances are considered, these are outweighed by the net biomass accumulation by tree growth, supporting the inference of an Amazon carbon sink.

The main objective of this study is to understand the turbidity behavior of an Amazon Floodplain Lake. Observations of turbidity provide quantitative information about water quality. However, the number of available in situ measurements for water quality determination is usually limited in time and space. Here, we present an analysis of the temporal and spatial variability using two approaches: (i) the first is based on wavelet analysis of a turbidity time series measured by an automatic monitoring system; (ii) the second is based on turbidity samples measured in different locations and then interpolated by an ordinary kriging algorithm. The space/time turbidity variability is clearly related to the Amazon River flood pulses in the floodplain. When the water level in the floodplain is rising or receding, the exchange between the Amazon River and the floodplain is the major driving force in turbidity variability. At high water level, the turbidity variability is controlled by the lake bathymetry. Finally, when the water level is low, the wind action and lake morphometry are the main causes of turbidity variability. The combined use of temporal and spatial data showed a great potential for understanding the turbidity behavior in a complex aquatic system, like the Amazon floodplain.

A recent controversy over Amazon's culture has strong implications for the whole child approach, and it offers powerful lessons for principals. A significant difference between the culture of so many businesses today and the culture at good schools is that in good schools, the welfare of the employees is very important. Student success is the…

This teacher's resource guide was created to accompany the Amazon Flooded Forest exhibit at the Oregon Zoo. The enclosed lessons and activities are designed to extend into several aspects of daily curriculum including science, math, reading, writing, speaking, and geography. The materials are intended for use in grades 3-6 although most activities…

Many tropical regions show one distinct dry season. Often, this seasonality induces cambial dormancy of trees, particularly if these belong to deciduous species. This will often lead to the formation of annual rings. The aim of this study was to determine whether tree species in the Bolivian Amazon region form annual rings and to study the influence of the total amount and seasonal distribution of rainfall on diameter growth. Ring widths were measured on stem discs of a total of 154 trees belonging to six rain forest species. By correlating ring width and monthly rainfall data we proved the annual character of the tree rings for four of our study species. For two other species the annual character was proved by counting rings on trees of known age and by radiocarbon dating. The results of the climate-growth analysis show a positive relationship between tree growth and rainfall in certain periods of the year, indicating that rainfall plays a major role in tree growth. Three species showed a strong relationship with rainfall at the beginning of the rainy season, while one species is most sensitive to the rainfall at the end of the previous growing season. These results clearly demonstrate that tree ring analysis can be successfully applied in the tropics and that it is a promising method for various research disciplines. PMID:16012820

Monitoring tropical forest cover is central to biodiversity preservation, terrestrial carbon stocks, essential ecosystem and climate functions, and ultimately, sustainable economic development. The Amazon forest is the Earth's largest rainforest, and despite intensive studies on current deforestation rates, relatively little is known as to how these compare to historic (pre 1985) deforestation rates. We quantified land cover change between 1975 and 2014 in the so-called Arc of Deforestation of the Brazilian Amazon, covering the southern stretch of the Amazon forest and part of the Cerrado biome. We applied a consistent method that made use of data from Landsat sensors: Multispectral Scanner (MSS), Thematic Mapper (TM), Enhanced Thematic Mapper Plus (ETM+) and Operational Land Imager (OLI). We acquired suitable images from the US Geological Survey (USGS) for five epochs: 1975, 1990, 2000, 2010, and 2014. We then performed land cover analysis for each epoch using a systematic sample of 156 sites, each one covering 10 km x 10 km, located at the confluence point of integer degree latitudes and longitudes. An object-based classification of the images was performed with five land cover classes: tree cover, tree cover mosaic, other wooded land, other land cover, and water. The automatic classification results were corrected by visual interpretation, and, when available, by comparison with higher resolution imagery. Our results show a decrease of forest cover of 24.2% in the last 40 years in the Brazilian Arc of Deforestation, with an average yearly net forest cover change rate of -0.71% for the 39 years considered.

Both short-term (weather) and long-term (climate) variations in the atmosphere directly impact various ecosystems on earth. Forest ecosystems, especially tropical forests, are crucial as they are the largest reserves of terrestrial carbon sink. For example, the Amazon forests are a critical component of global carbon cycle storing about 100 billion tons of carbon in its woody biomass. There is a growing concern that these forests could succumb to precipitation reduction in a progressively warming climate, leading to release of significant amount of carbon in the atmosphere. Therefore, there is a need to accurately quantify the dependence of vegetation growth on different climate variables and obtain better estimates of drought-induced changes to atmospheric CO2. The availability of globally consistent climate and earth observation datasets have allowed global scale monitoring of various climate and vegetation variables such as precipitation, radiation, surface greenness, etc. Using these diverse datasets, we aim to quantify the magnitude and extent of ecosystem exposure, sensitivity and resilience to droughts in forests. The Amazon rainforests have undergone severe droughts twice in last decade (2005 and 2010), which makes them an ideal candidate for the regional scale analysis. Current studies on vegetation and climate relationships have mostly explored linear dependence due to computational and domain knowledge constraints. We explore a modeling technique called symbolic regression based on evolutionary computation that allows discovery of the dependency structure without any prior assumptions. In symbolic regression the population of possible solutions is defined via trees structures. Each tree represents a mathematical expression that includes pre-defined functions (mathematical operators) and terminal sets (independent variables from data). Selection of these sets is critical to computational efficiency and model accuracy. In this work we investigate

A basic radial dike swarm unrelated to other basic units of Boa Vista (Cape Verde Archipelago) has been localized and characterized in the central sector of the island. According to new radiometric data three main stages in the evolution of Boa Vista are distinguished: the earlier (the Old Volcanic Complex: 17-16 Ma) is equivalent to the shield building stage of Hawaii and the later (the Recent Volcanics (8-4 Ma) is in some aspects comparable to the post-erosional stage. An important intermediate essentially felsic stage (the Trachytic-Phonolitic Complex: 14.3-12.8 Ma) followed the basaltic shield stage. This felsic stage has equivalents in some other oceanic islands as the Canary Islands, specially Gran Canaria, Tenerife, and La Gomera. The central sector of Boa Vista is also occupied by the Felsic Subvolcanic Complex, a unit consisting of phonolitic breccias, syenites and monzonites that represent the Trachytic-Phonolitic Complex hypabyssal roots. The felsic rocks as a whole constitute half of the total amount of igneous rocks on the island making up Boa Vista, the island with the highest percentage of felsic rocks in the Central Atlantic Ocean. More than 200 dikes of the basic radial swarm intruding the Felsic Subvolcanic Complex have been measured. The intensity of the multiple dike injection is sometimes rather high, roughly a dike every 5 m. The individual dikes have an observable mean length of about 300 m. The composition of these dikes is always foiditic (nephelinites, melilitites, and limburgites), slightly different in composition (more alkaline and richer in incompatible elements) to the other basic units of the island (the Old Volcanic Complex and the Recent Volcanics). The radial dikes converge in an area located NW of the geometrical center of Boa Vista, a zone where the hypothetical center of the Old Volcanic Complex and the Trachytic-Phonolitic Complex edifices must also have been situated. The ages obtained from the dikes (between 14.8 and 11.5 Ma

This manual is designed to prepare students for entry-level positions as tree care professionals. Addressed in the individual chapters of the guide are the following topics: the tree service industry; clothing, eqiupment, and tools; tree workers; basic tree anatomy; techniques of pruning; procedures for climbing and working in the tree; aerial…

The Neotropical malaria vector Anopheles aquasalis Curry is distributed predominantly along the Atlantic and Pacific Coasts because of its tolerance for breeding in salt water. We tested the hypothesis that the freshwater Amazon River acts as a barrier to gene flow in northeastern Brazil, by examining variation at a 588-nucleotide fragment of the mitochondrial cytochrome oxidase Igene from five populations. We identified 15 haplotypes of which 5 were shared both (1) between sample localities and (2) across the Amazon River Delta. Sequence divergence ranged from 0.0017-0.0272 (average = 0.0137). Estimates of genetic subdivision based on the presence of the Amazon Riverwere greatest within localities (phi = 0.029) and among regions (phi = 0.018), followed by among localities (phi = 0.011), but none were significant. Parsimony, neighbor-joining, and Nested Clade Analyses were used to estimate relationships among populations and infer evolutionary processes. Two phylogenetically distinct clusters of populations were moderately supported by parsimony. Neighbor-joining trees were poorly resolved, thus providing no geographical resolution and no support for the Amazon River as a barrier to migration. Phylogeographic structure as detected by the Nested Clade Analysis was consistent with restricted gene flow coupled with isolation by distance. Taken together, these analyses suggest that the localities within this region of northeastern Brazil constitute a single large population of An. aquasalis that spans the Amazon Delta. PMID:12495184

Agroforestry ecosystems may be an important resource for conservation and sustainable use of tropical trees, but little is known of the genetic diversity they contain. Inga edulis, a widespread indigenous fruit tree in South America, is used as a model to assess the maintenance of genetic diversity in five planted vs. five natural stands in the Peruvian Amazon. Analysis of five SSR (simple sequence repeat) loci indicated lower allelic variation in planted stands [mean corrected allelic richness 31.3 (planted) and 39.3 (natural), P = 0.009]. Concerns regarding genetic erosion in planted Amazonian tree stands appear valid, although allelic variation on-farm is still relatively high. PMID:15660940

Land use/land cover (LU/LC) changes have been reported to occur over large areas in Legal Amazon due to the introduction of large-scale mechanized agriculture, extensive cattle ranching and uncontrolled slash-and-burn cultivation since the 1980s. Around the same time, movements which poor peoples or landless peasants settle into abandoned land have been very active in Brazil. In many cases, these people lack agricultural experiences to yield sufficient production for livelihoods. Thus, it leads to abandon the land and repeat forest clearance. In recent year, education by NGOs to these people encourage spreading of agroforestry which is a land use management system in which trees are grown around or among crops or pasture land. In this study, we specifically aimed at clarifying changes in LULC and these biomass using ground observation data, remotely-sensed LANDSAT data and GIS techniques. We focus on four different settlements: old-established settlement (around 30 years), established settlement (around 20 years), productive settlement (7 year) and unproductive settlement (7 years). These four settelements were located at Santa Barbará province, about 40 km northeast from the center of Belém, the Pará state capital, in the northern part of Brazil. We clarify that the biomass change varied according to whether the settlement are productive or not.

As part of the calibration of the second lifetime position on the Cosmic Origins Spectrograph (COS) far-ultraviolet (FUV) detectors, observations of the external target, G191-B2B, were obtained with the G130M, G160M, and G140L gratings in combi- nation with the Bright Object Aperture. The observations were designed to verify the performance of these spectroscopic modes by reproducing similar observations taken during the SM4 Servicing Mission Observatory Verification (SMOV) of COS. These observations allowed for a detailed determination of the spatial location and profile of the spectra from the three gratings, as well as a determination of the spectral resolution of the G130M grating prior to and after the lifetime move. In general, the negligi- ble differences which exist between the two lifetime positions can be attributed to slight differences in the optical path. In particular, the spectral resolution appears to be slightly improved. The stability of the absolute and relative flux calibration was investigated for G130M as well using STIS echelle data of G191-B2B. We determine that the COS ab- solute flux calibration with the BOA is accurate to 10%, and flux calibrated data are reproducible at the 1-2% level since SMOV.

We sequenced a 1114-bp fragment of cytochrome b gene in six subspecies (115 samples) of Boa constrictor and detected 67 haplotypes. Our analyses revealed the presence of two distinct clades, one from Central America (CA) including the neighboring part of South America west of the Andes, and the other covering the rest of South America (SA). Sequence divergence between CA and SA clades is about 5-7%, which roughly corresponds to a separation at the time of uplift of the Colombian Andes following formation of the Panama Isthmus before 3.5 Myr Sequence divergence within the SA and CA clades is only 2-3%, suggesting a fairly recent spread of these clades Into their current geographic ranges. Thus, we may not be dealing with taxa with a markedly old evolutionary history. Because juveniles of B. constrictor feed mostly on small rodents, we hypothesized that spread of this species was allowed by a new food source represented by murold rodents that appeared after closure of the Panama portal. With respect to the taxonomy, B. c. imperator may be elevated to full species rank. Within the SA clade, a haplotype of Argentinian B. c. occidentalis is markedly distinct, while the remaining haplotype groups analyzed are distributed throughout large ranges and may all belong to a single nominotypic subspecies. PMID:19799513

The Amazon's hydrological cycle is a key driver of global climate, and global climate is therefore sensitive to changes in the Amazon. Climate change threatens to substantially affect the Amazon region, which in turn is expected to alter global climate and increase the risk of biodiversity loss. In this literature review the following subjects can be distinguished: Observed Climatic Change and Variability, Predicted Climatic Change, Impacts, Forests, Freshwater, Agriculture, Health, and Sea Level Rise.

The mass of trees is influenced by physiological processes within the tree (e.g. transpiration and root water uptake), as well as external loads (e.g. intercepted precipitation). Recent studies have found diurnal variations in radar backscatter over vegetated areas, which might be attributed to mass changes of the vegetation layer. Field measurements are required to study the driving processes. This study aims to use measured three-dimensional displacement and acceleration of trees, to detect and quantify their diurnal (bio)mass variations. Accelerometers and dendrometers were installed on seven different tree species in the Amazon rainforest. Trees were selected to cover a broad range of wood density. Using spectral analysis, the governing frequencies in the acceleration time series were found. The governing frequencies showed a diurnal pattern, as well as a change during precipitation events. Our results suggest that we can separate and potentially quantify tree mass changes due to (1) internal water redistribution and (2) intercepted precipitation. This will allow further investigation of the effect of precipitation and water stress on tree dynamics in forest canopies.

Amazon deforestation has been measured by remote sensing for three decades. In comparison, selective logging has been mostly invisible to satellites. We developed a large-scale, high-resolution, automated remote-sensing analysis of selective logging in the top five timber-producing states of the Brazilian Amazon. Logged areas ranged from 12,075 to 19,823 square kilometers per year (+/-14%) between 1999 and 2002, equivalent to 60 to 123% of previously reported deforestation area. Up to 1200 square kilometers per year of logging were observed on conservation lands. Each year, 27 million to 50 million cubic meters of wood were extracted, and a gross flux of ~0.1 billion metric tons of carbon was destined for release to the atmosphere by logging.

A double yellow headed Amazon parrot (Amazona ochrocephala tresmariae) of unknown age and sex was examined for an acute onset of anorexia, listlessness, central nervous system signs and diarrhea. A tentative diagnosis of lead toxicosis was achieved based on radiographs, clinical pathology and response to therapy. Chelation therapy (Calcium EDTA) and supportive measures resulted in an uneventful recovery. ImagesFigure 1.Figure 2.Figure 3. PMID:17422638

The increasing number of autochthonous cases of Chagas disease in the Amazon since the 1970s has led to fear that the disease may become a new public health problem in the region. This transformation in the disease's epidemiological pattern in the Amazon can be explained by environmental and social changes in the last 30 years. The current article draws on the sociological theory of perverse effects to explain these changes as the unwanted result of the shift from the "inward" development model prevailing until the 1970s to the "outward" model that we know as globalization, oriented by industrial forces and international trade. The current article highlights the implementation of five new patterns in agriculture, cattle-raising, mining, lumbering, and urban occupation that have generated changes in the environment and the traditional indigenous habitat and have led to migratory flows, deforestation, sedentary living, the presence of domestic animals, and changes in the habitat that facilitate colonization of human dwellings by vectors and the domestic and work-related transmission of the disease. The expansion of Chagas disease is thus a perverse effect of the globalization process in the Amazon. PMID:17308715

The distribution of carbon isotopes in Amazon shelf sediment is controlled by the same processes that are forming the modern subaqueous delta. The terrestrial (-27 to -25 per thousand) isotopic carbon signal observed in surficial sediments near the river mouth extends over 400 km northwest along the shelf. Terrestrial carbon is associated with areas of rapid sediment accumulation (topset and foreset regions). A sharp boundary between terrestrial (-27 to -25 per thousand) and marine (-23 to -22 per thousand) isotopic carbon values in surficial sediments is associated with a change in depositional conditions (foreset to bottomset regions) and a decrease in sediment accumulation rate. POC water-column isotopic values (-27 per thousand) near the river mouth are similar to the underlying surficial-sediment TOC isotopic values, but POC water-column samples collected 20 km off the river mouth have marine carbon isotopic values (-22 to -19 per thousand) and differ from the underlying surficial-sediment TOC isotopic values. These water column observations are related to variations in turbidity and productivity. Down-core isotopic variation is only observed in cores taken in areas of lower sediment accumulation rates. These observations indicate that the organic carbon in Amazon shelf sediment is dominantly terrestrial in composition, and the location of deposition of this carbon is controlled by modern processes of sediment accumulation. The modern Amazon shelf is similar to large clinoform shale deposits of the Cretaceous in North America. Thus, the stratigraphic setting may help predict the isotopic variations of carbon in ancient deposits.

The Brazilian state oil company has proved gas reserves in the Rio Urucu area of the Amazon jungle totaling 1.84 tcf. That compares with 3.08 tcf contained in the offshore Campos basin, source of most of Brazil`s oil and gas production. The environmentally sensitive Urucu region is one of the most dense, remote jungles in the world. Because of environmental concerns about pipelines in the rain forest and a government emphasis on boosting the natural gas share of Brazil`s energy mix, a small liquefied natural gas project is shaping up as the best option for developing and marketing Urucu gas. The amazon campaign underscores a government initiative to boost Brazilian consumption of natural gas. In Brazil natural gas accounts for only 4% of primary energy consumption. Some years ago, the government set an official goal of boosting the gas share of the primary energy mix to 10% by 2000. The paper discusses current drilling activities, gas production and processing, the logistics of the upper Amazon, and gas markets.

Mercury exposure in the Amazon has been studied since the 1980s decade and the assessment of human mercury exposure in the Amazon is difficult given that the natural occurrence of this metal is high and the concentration of mercury in biological samples of this population exceeds the standardized value of normality established by WHO. Few studies have focused on the discovery of mercury biomarkers in the region's population. In this way, some studies have used genetics as well as immunological and cytogenetic tools in order to find a molecular biomarker for assessing the toxicological effect of mercury in the Amazonian population. Most of those studies focused attention on the relation between mercury exposure and autoimmunity and, because of that, they will be discussed in more detail. Here we introduce the general aspects involved with each biomarker that was studied in the region in order to contextualize the reader and add information about the Amazonian life style and health that may be considered for future studies. We hope that, in the future, the toxicological studies in this field use high technological tools, such as the next generation sequencing and proteomics skills, in order to comprehend basic questions regarding the metabolic route of mercury in populations that are under constant exposure, such as in the Amazon. PMID:24895619

Presents and analyzes the largest and most complete data set ever produced on the economic variables that influence deforestation by small farmers in the Amazon. This landmark study presents the largest and most analytically complete data set ever produced on the economic variables that influence deforestation by small farmers in the Amazon. The authors examine the changing character of the Amazon frontier based on field surveys conducted during twenty years of settlement experience. By observing the economic behavior of small farmers from colonization during the 1970s until the chaotic aftermath of the early 1990s, the authors are able to pinpoint a central paradox: unsuccessful farmers tend to be unstable, moving on to new frontiers where they will again destroy forests. Successful farmers tend to increase deforestation in the places where they remain. The findings reveal that much of the Amazonian frontier land cleared by pioneers in the 1970s is becoming agriculturally unproductive. Small farmers should be rewarded for staying where they are and for pursuing sustainable farming. Good farming methods must be promoted, and deforestation must be penalized. The authors recommend the implementation of innovative economic policies and new forms of cooperation between environmental and economic agencies, including the World Bank, at both local and international levels. The aim of these policies should be to raise agricultural incomes and reduce environmental aggression.

Nature often replicates her processes at different scales of space and time in differing media. Here a tree-trunk cross section I am preparing for a dendrochronological display at the Battle Creek Cypress Swamp Nature Sanctuary (Calvert County, Maryland) dried and cracked in a way that replicates practically all the planform features found along the Mid-Oceanic Ridge (see Figure 1). The left-lateral offset of saw marks, contrasting with the right-lateral ``rift'' offset, even illustrates the distinction between transcurrent (strike-slip) and transform faults, the latter only recognized as a geologic feature, by J. Tuzo Wilson, in 1965. However, wood cracking is but one of many examples of natural processes that replicate one or several elements of lithospheric plate tectonics. Many of these examples occur in everyday venues and thus make great teaching aids, ``teachable'' from primary school to university levels. Plate tectonics, the dominant process of Earth geology, also occurs in miniature on the surface of some lava lakes, and as ``ice plate tectonics'' on our frozen seas and lakes. Ice tectonics also happens at larger spatial and temporal scales on the Jovian moons Europa and perhaps Ganymede. Tabletop plate tectonics, in which a molten-paraffin ``asthenosphere'' is surfaced by a skin of congealing wax ``plates,'' first replicated Mid-Oceanic Ridge type seafloor spreading more than three decades ago. A seismologist (J. Brune, personal communication, 2004) discovered wax plate tectonics by casually and serendipitously pulling a stick across a container of molten wax his wife and daughters had used in making candles. Brune and his student D. Oldenburg followed up and mirabile dictu published the results in Science (178, 301-304).

Background: Cardiovascular disease is the most common cause of disease in the developed world. Early detection and risk prediction are a key component in reducing cardiovascular mortality. The Framingham Risk Score uses age, sex, cholesterol, blood pressure, diabetes, and smoking to calculate the 10-year risk probability of developing cardiovascular disease for a given patient. The aim of this study was to examine cardiovascular disease risk in men aged over 40 years in Boa Vista, Brazil and identify socioeconomic factors contributing to the risk. Methods: This was an epidemiological, cross-sectional, descriptive study. Physical examination and questionnaire survey were conducted on the participants. Results: Of the 598 participants (average age = 55.38 ± 10.77 years), 346 completed all the examinations and answered the survey, while 252 completed the survey and the physical examinations but did not undertake the laboratory tests. A large proportion of participants were overweight (42.6%) or obese (23.6%), 14.5% were hypertensive, and 71.9% were prehypertensive. Consumption of red meat and junk food was high, while participation in the exercise was low. Framingham scores ranged from −3 to 13 (mean score: 3.86 ± 3.16). A total of 204 participants (34.1%) had a low risk of cardiovascular disease, 98 (16.4%) had a medium risk, and 44 (7.4%) possessed high risk. Increased abdominal circumference (P = 0.013), resting pulse (P = 0.002), and prostate-specific antigen levels (P < 0.001) were associated with increased risk of cardiovascular disease. Conclusions: Our study highlights a worrying trend in increasing obesity and hypertension, most likely associated with increasingly poor diet and reduced participation in exercises. As the Brazilian population ages, this will drive increasing rates of cardiovascular mortality unless these trends are reversed. This study suggests that such campaigns should focus on men over the age of 40, who are married or divorced and of

The increased metabolic rate during digestion is associated with changes in arterial acid-base parameters that are caused by gastric acid secretion (the 'alkaline tide'). Net transfer of HCl to the stomach lumen causes an increase in plasma HCO3- levels, but arterial pH does not change because of a ventilatory compensation that counters the metabolic alkalosis. It seems, therefore, that ventilation is controlled to preserve pH and not PCO2 during the postprandial period. To investigate this possibility, we determined arterial acid-base parameters and the metabolic response to digestion in the snake Boa constrictor, where gastric acid secretion was inhibited pharmacologically by oral administration of omeprazole. The increase in oxygen consumption of omeprazole-treated snakes after ingestion of 30% of their own body mass was quantitatively similar to the response in untreated snakes, although the peak of the metabolic response occurred later (36 h versus 24 h). Untreated control animals exhibited a large increase in arterial plasma HCO3- concentration of approximately 12 mmol l(-1), but arterial pH only increased by 0.12 pH units because of a simultaneous increase in arterial PCO2 by about 10 mmHg. Omeprazole virtually abolished the changes in arterial pH and plasma HCO3- concentration during digestion and there was no increase in arterial PCO2. The increased arterial PCO2 during digestion is not caused, therefore, by the increased metabolism during digestion or a lower ventilatory responsiveness to ventilatory stimuli during a presumably relaxed state in digestion. Furthermore, the constant arterial PCO2, in the absence of an alkaline tide, of omeprazole-treated snakes strongly suggests that pH rather than PCO2 normally affects chemoreceptor activity and ventilatory drive. PMID:15010489

The effects are reported here of Benzoxazolin-2(3H)-one (BOA), an allelopathic compound, on plant water relations, growth, components of chlorophyll fluorescence, and carbon isotope discrimination in lettuce (Lactuca sativa L.). Lettuce seedlings were grown in 1:1 Hoagland solution in perlite culture medium in environmentally controlled glasshouse. After 30 days, BOA was applied at concentration of 0.1, 0.5, 1.0 and 1.5 mM and distilled water (control). BOA, in the range (0.1-1.5 mM), decreased the shoot length, root length, leaf and root fresh weight. Within this concentration range, BOA significantly reduced relative water content while leaf osmotic potential remained unaltered. Stress response of lettuce was evaluated on the basis of six days of treatment with 1.5 mM BOA by analyzing several chlorophyll fluorescence parameters determined under dark-adapted and steady state conditions. There was no change in initial fluorescence (F₀) in response to BOA treatment while maximum chlorophyll fluorescence (F(m)) was significantly reduced. BOA treatment significantly reduced variable fluorescence (F(v)) on first, second, third, fourth, fifth and sixth day. Quantum efficiency of open PSII reaction centers (F(v)/F(m)) in the dark-adapted state was significantly reduced in response to BOA treatment. Quantum yield of photosystem II (ΦPSII) electron transport was significantly reduced because of decrease in the efficiency of excitation energy trapping of PSII reaction centers. Maximum fluorescence in light-adapted leaves (F'(m)) was significantly decreased but there was no change in initial fluorescence in light-adapted state (F'₀) in response to 1.5 mM BOA treatment. BOA application significantly reduced photochemical fluorescence quenching (qP) indicating that the balance between excitation rate and electron transfer rate has changed leading to a more reduced state of PSII reaction centers. Non photochemical quenching (NPQ) was also significantly reduced by BOA

Interactions between climate and land-use change may drive widespread degradation of Amazonian forests. High-intensity fires associated with extreme weather events could accelerate this degradation by abruptly increasing tree mortality, but this process remains poorly understood. Here we present, to our knowledge, the first field-based evidence of a tipping point in Amazon forests due to altered fire regimes. Based on results of a large-scale, long-term experiment with annual and triennial burn regimes (B1yr and B3yr, respectively) in the Amazon, we found abrupt increases in fire-induced tree mortality (226 and 462%) during a severe drought event, when fuel loads and air temperatures were substantially higher and relative humidity was lower than long-term averages. This threshold mortality response had a cascading effect, causing sharp declines in canopy cover (23 and 31%) and aboveground live biomass (12 and 30%) and favoring widespread invasion by flammable grasses across the forest edge area (80 and 63%), where fires were most intense (e.g., 220 and 820 kW ⋅ m(-1)). During the droughts of 2007 and 2010, regional forest fires burned 12 and 5% of southeastern Amazon forests, respectively, compared with <1% in nondrought years. These results show that a few extreme drought events, coupled with forest fragmentation and anthropogenic ignition sources, are already causing widespread fire-induced tree mortality and forest degradation across southeastern Amazon forests. Future projections of vegetation responses to climate change across drier portions of the Amazon require more than simulation of global climate forcing alone and must also include interactions of extreme weather events, fire, and land-use change. PMID:24733937

Interactions between climate and land-use change may drive widespread degradation of Amazonian forests. High-intensity fires associated with extreme weather events could accelerate this degradation by abruptly increasing tree mortality, but this process remains poorly understood. Here we present, to our knowledge, the first field-based evidence of a tipping point in Amazon forests due to altered fire regimes. Based on results of a large-scale, long-term experiment with annual and triennial burn regimes (B1yr and B3yr, respectively) in the Amazon, we found abrupt increases in fire-induced tree mortality (226 and 462%) during a severe drought event, when fuel loads and air temperatures were substantially higher and relative humidity was lower than long-term averages. This threshold mortality response had a cascading effect, causing sharp declines in canopy cover (23 and 31%) and aboveground live biomass (12 and 30%) and favoring widespread invasion by flammable grasses across the forest edge area (80 and 63%), where fires were most intense (e.g., 220 and 820 kW⋅m−1). During the droughts of 2007 and 2010, regional forest fires burned 12 and 5% of southeastern Amazon forests, respectively, compared with <1% in nondrought years. These results show that a few extreme drought events, coupled with forest fragmentation and anthropogenic ignition sources, are already causing widespread fire-induced tree mortality and forest degradation across southeastern Amazon forests. Future projections of vegetation responses to climate change across drier portions of the Amazon require more than simulation of global climate forcing alone and must also include interactions of extreme weather events, fire, and land-use change. PMID:24733937

The vulnerability of the Amazon region to climate and anthropogenic driven disturbances has been the subject of extensive research efforts, given its importance in the global and regional climate and ecologic systems. The evaluation of such vulnerabilities requires the proper understanding of physical mechanisms controlling water and energy balances and how the disturbances change them. Among those mechanisms, the effects of atmospheric albedo on evapotranspiration have not been fully explored yet and are explored in this study. Evapotranspiration in the Amazon is sustained at high levels across all seasons and represents a large fraction of water and energy surface budgets. In this study, statistical analysis of data from four flux towers installed at Amazon primary forest sites was employed to quantify the impact of atmospheric albedo, mostly resulted from cloudiness, on evapotranspiration and to compare it to the effect of water limitation. Firstly, the difference in eddy-flux derived evapotranspiration at the flux towers under rainy and non-rainy antecedent conditions was tested for significance. Secondly, the same statistical comparison was performed under cloudy and clear sky conditions at hourly and daily time scales, using the reduction in incoming solar radiation as an indicator of cloudiness. Finally, the sensitivity of seasonal evapotranspiration totals to atmospheric albedo resulted from rainfall patterns is evaluated. That was done by sampling daily evapotranspiration estimates from empirical probability distribution functions conditioned to rainfall occurrence and then varying the number of dry days in each season. It was found that light limitation is much more important than water limitation in the Amazon, resulting in up to 43% reduction in daily evapotranspiration. Also, this effect varies by location and by season, the largest impact being in wet season, from December do January. Moreover, seasonal evapotranspiration totals were found to be

The Amazon forest, a regional and global regulator of climate and store of enormous biodiversity, is an incredibly complex ecosystem. Just one ha of forest can contain 300 different species of tree, with an estimated 16,000 tree species present in the region. Different tree species, and even different individuals of a species, vary in their functional traits, influencing how they behave in response to the environment. Dynamic global vegetation models (DGVMs) are commonly used to simulate the response of the Amazon forest to global environmental change. Yet, such DGVMs typically use a plant functional type (PFT) approach where variation between individuals and species are not represented, which inherently limits the range of outcomes for Amazonia under climate change. Here, we report on recent advances in an alternative approach to tropical forest modeling that represents the size structure and variation of traits within a community, which we term the Trait-based Forest Simulator (TFS). As originally proposed, TFS was strictly a steady-state model and here we present an extension of TFS which includes full forest dynamics, and has been evaluated with data collected from intensive carbon cycling inventory plots from the GEM (Global Ecosystems Monitoring) network. Specifically, we compare the model output to stand-level data on productivity and respiration of the canopy, stems and roots. The model development process has highlighted ecological tradeoffs that are necessary to integrate into trait-based models, such as a shorter leaf lifetime with a lower leaf mass per area. The adapted TFS model simulates carbon cycling in forest plots, including variation in productivity between sites. These results lend confidence to the ability of next-generation vegetation models to accurately simulate forest sensitivity to future changes.

Tree rings can be used not only to look at plant growth, but also to make connections between plant growth and resource availability. In this lesson, students in 2nd-4th grades use role-play to become familiar with basic requirements of trees and how availability of those resources is related to tree ring sizes and tree growth. These concepts can…

The Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5) Experiment was carried out in the environs of Manaus, Brazil, in the central region of the Amazon basin during two years from 1 January 2014 through 31 December 2015. The experiment focused on the complex interactions among vegetation, atmospheric chemistry, and aerosol production on the one hand and their connections to aerosols, clouds, and precipitation on the other. The objective was to understand and quantify these linked processes, first under natural conditions to obtain a baseline and second when altered by the effects of human activities. To this end, the pollution plume from the Manaus metropolis, superimposed on the background conditions of the central Amazon basin, served as a natural laboratory. The present paper, as the Introduction to the GoAmazon2014/5 Special Issue, presents the context and motivation of the GoAmazon2014/5 Experiment. The nine research sites, including the characteristics and instrumentation of each site, are presented. The sites range from time point zero (T0) upwind of the pollution, to T1 in the midst of the pollution, to T2 just downwind of the pollution, to T3 furthest downwind of the pollution (70 km). In addition to the ground sites, a low-altitude G-159 Gulfstream I (G1) observed the atmospheric boundary layer and low clouds, and a high-altitude Gulfstream G550 (HALO) operated in the free troposphere. During the two-year experiment, two Intensive Operating Periods (IOP1 and IOP2) also took place that included additional specialized research instrumentation at the ground sites as well as flights of the two aircraft. GoAmazon2014/5 IOP1 was carried out from 1 February to 31 March 2014 in the wet season. GoAmazon2014/5 IOP2 was conducted from 15 August to 15 October 2014 in the dry season. The G1 aircraft flew during both IOP1 and IOP2, and the HALO aircraft flew during IOP2. In the context of the Amazon basin, the two IOPs also correspond to the clean

The Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5) Experiment was carried out in the environs of Manaus, Brazil, in the central region of the Amazon basin for 2 years from 1 January 2014 through 31 December 2015. The experiment focused on the complex interactions among vegetation, atmospheric chemistry, and aerosol production on the one hand and their connections to aerosols, clouds, and precipitation on the other. The objective was to understand and quantify these linked processes, first under natural conditions to obtain a baseline and second when altered by the effects of human activities. To this end, the pollution plume from the Manaus metropolis, superimposed on the background conditions of the central Amazon basin, served as a natural laboratory. The present paper, as the introduction to the special issue of GoAmazon2014/5, presents the context and motivation of the GoAmazon2014/5 Experiment. The nine research sites, including the characteristics and instrumentation of each site, are presented. The sites range from time point zero (T0) upwind of the pollution, to T1 in the midst of the pollution, to T2 just downwind of the pollution, to T3 furthest downwind of the pollution (70 km). In addition to the ground sites, a low-altitude G-159 Gulfstream I (G-1) observed the atmospheric boundary layer and low clouds, and a high-altitude Gulfstream G550 (HALO) operated in the free troposphere. During the 2-year experiment, two Intensive Operating Periods (IOP1 and IOP2) also took place that included additional specialized research instrumentation at the ground sites as well as flights of the two aircraft. GoAmazon2014/5 IOP1 was carried out from 1 February to 31 March 2014 in the wet season. GoAmazon2014/5 IOP2 was conducted from 15 August to 15 October 2014 in the dry season. The G-1 aircraft flew during both IOP1 and IOP2, and the HALO aircraft flew during IOP2. In the context of the Amazon basin, the two IOPs also correspond to the clean and

At the Amazon estuary, the oldest logging frontier in the Amazon, no studies have comprehensively explored the potential long-term population and yield consequences of multiple timber harvests over time. Matrix population modeling is one way to simulate long-term impacts of tree harvests, but this approach has often ignored common impacts of tree harvests including incidental damage, changes in post-harvest demography, shifts in the distribution of merchantable trees, and shifts in stand composition. We designed a matrix-based forest management model that incorporates these harvest-related impacts so resulting simulations reflect forest stand dynamics under repeated timber harvests as well as the realities of local smallholder timber management systems. Using a wide range of values for management criteria (e.g., length of cutting cycle, minimum cut diameter), we projected the long-term population dynamics and yields of hundreds of timber management regimes in the Amazon estuary, where small-scale, unmechanized logging is an important economic activity. These results were then compared to find optimal stand-level and species-specific sustainable timber management (STM) regimes using a set of timber yield and population growth indicators. Prospects for STM in Amazonian tidal floodplain forests are better than for many other tropical forests. However, generally high stock recovery rates between harvests are due to the comparatively high projected mean annualized yields from fast-growing species that effectively counterbalance the projected yield declines from other species. For Amazonian tidal floodplain forests, national management guidelines provide neither the highest yields nor the highest sustained population growth for species under management. Our research shows that management guidelines specific to a region's ecological settings can be further refined to consider differences in species demographic responses to repeated harvests. In principle, such fine

At the Amazon estuary, the oldest logging frontier in the Amazon, no studies have comprehensively explored the potential long-term population and yield consequences of multiple timber harvests over time. Matrix population modeling is one way to simulate long-term impacts of tree harvests, but this approach has often ignored common impacts of tree harvests including incidental damage, changes in post-harvest demography, shifts in the distribution of merchantable trees, and shifts in stand composition. We designed a matrix-based forest management model that incorporates these harvest-related impacts so resulting simulations reflect forest stand dynamics under repeated timber harvests as well as the realities of local smallholder timber management systems. Using a wide range of values for management criteria (e.g., length of cutting cycle, minimum cut diameter), we projected the long-term population dynamics and yields of hundreds of timber management regimes in the Amazon estuary, where small-scale, unmechanized logging is an important economic activity. These results were then compared to find optimal stand-level and species-specific sustainable timber management (STM) regimes using a set of timber yield and population growth indicators. Prospects for STM in Amazonian tidal floodplain forests are better than for many other tropical forests. However, generally high stock recovery rates between harvests are due to the comparatively high projected mean annualized yields from fast-growing species that effectively counterbalance the projected yield declines from other species. For Amazonian tidal floodplain forests, national management guidelines provide neither the highest yields nor the highest sustained population growth for species under management. Our research shows that management guidelines specific to a region’s ecological settings can be further refined to consider differences in species demographic responses to repeated harvests. In principle, such fine

At the Amazon estuary, the oldest logging frontier in the Amazon, no studies have comprehensively explored the potential long-term population and yield consequences of multiple timber harvests over time. Matrix population modeling is one way to simulate long-term impacts of tree harvests, but this approach has often ignored common impacts of tree harvests including incidental damage, changes in post-harvest demography, shifts in the distribution of merchantable trees, and shifts in stand composition. We designed a matrix-based forest management model that incorporates these harvest-related impacts so resulting simulations reflect forest stand dynamics under repeated timber harvests as well as the realities of local smallholder timber management systems. Using a wide range of values for management criteria (e.g., length of cutting cycle, minimum cut diameter), we projected the long-term population dynamics and yields of hundreds of timber management regimes in the Amazon estuary, where small-scale, unmechanized logging is an important economic activity. These results were then compared to find optimal stand-level and species-specific sustainable timber management (STM) regimes using a set of timber yield and population growth indicators. Prospects for STM in Amazonian tidal floodplain forests are better than for many other tropical forests. However, generally high stock recovery rates between harvests are due to the comparatively high projected mean annualized yields from fast-growing species that effectively counterbalance the projected yield declines from other species. For Amazonian tidal floodplain forests, national management guidelines provide neither the highest yields nor the highest sustained population growth for species under management. Our research shows that management guidelines specific to a region’s ecological settings can be further refined to consider differences in species demographic responses to repeated harvests. In principle, such fine

The contribution of different land-use systems in the humid tropics to increasing atmospheric trace gases has focused on forests, pastures, and crops with few measurements from managed, tree-based systems that dominate much of the landscape. This study from the Peruvian Amazon includes monthly nitrous oxide and methane fluxes from two cropping systems, three tree-based systems, and a 23-year secondary forest control. Average N2O fluxes from the cropping systems were two to three times higher than the secondary forest control (9.1 μg N m-2 h-1), while those of the tree-based systems were similar to the secondary forest. Increased fluxes in the cropping systems were attributed to N fertilization, while fluxes from the tree-based systems were related to litterfall N. Average CH4 consumption was reduced by up to half that of the secondary forest (-30.0 μg C m-2 h-1) in the tree-based and low-input cropping systems. There was net CH4 production in the high-input cropping system. This switch to net production was a result of increased bulk density and increased soil respiration resulting in anaerobic conditions. Reduced rates of N2O emissions, similar CH4 consumption, and high C sequestration rates in these tree-based systems compared with mature forests, coupled with the large area of these systems in the humid tropics, may partially offset the past effects of deforestation on increased atmospheric trace gas concentrations. In contrast, cropping systems with higher N2O emissions, substantially reduced CH4 consumption or even net CH4 emissions, and little C sequestration exacerbate those effects.

The impacts of droughts on the Amazon ecosystem have been broadly discussed in recent years, but a comprehensive understanding of the consequences is still missing. In this study, we show evidence of a fragile hydrological equilibrium in the western Amazon. While drainage systems located near the equator and the western Amazon do not show water deficit in years with average climate conditions, this equilibrium can be broken during drought events. More importantly, we show that this effect is persistent, taking years until the normal hydrological patterns are reestablished. We show clear links between persistent changes in forest canopy structure and changes in hydrological patterns, revealing physical evidence of hydrological mechanisms that may lead to permanent changes in parts of the Amazon ecosystem. If prospects of increasing drought frequency are confirmed, a change in the current hydroecological patterns in the western Amazon could take place in less than a decade.

The authors determined the fluxes and concentrations of atmospheric sulfur species at ground level and from aircraft over the Amazon Basin during the 1987 wet season, providing a comprehensive description of the sulfur cycle over a remote tropical region. The vertical profile of dimethylsulfide (DMS) during the wet season was found to be very similar to that measured during the dry season. The concentrations of hydrogen sulfide (H{sub 2}S) were almost an order of magnitude higher than those of DMS, which makes H{sub 2}S the most important biogenic source species in the atmospheric sulfur cycle over the Amazon Basin. Using the gradient-flux approach, estimated the flux of DMS at the top of the tree canopy. The canopy was a source of DMS during the day, and a weak sink during the night. Measurements of sulfur gas emissions from soils, using the chamber method, showed very small fluxes, consistent with the hypothesis that the forest canopy is the major source of sulfur gases. The observed soil and canopy emission fluxes are similar to those measured in temperate regions. The concentrations of SO{sub 2} and sulfate aerosol in the wet season atmosphere were similar to dry season values. The sulfate concentration in rainwater, on the other hand, was lower by about a factor of 5 during the wet season. Due to the higher precipitation rate, however, the wet deposition flux of sulfate was not significantly different between the seasons. The measured fluxes and concentrations of DMS, H{sub 2}S, and SO{sub 2} were consistent with a model describing transport and chemistry of these sulfur species in the boundary layer. The concentrations of aerosol and the sulfate deposition rate, on the other hand, could only be explained by import of significant amounts of marine and anthropogenic sulfate aerosol into the Amazon Basin.

The complex three-dimensional (3-D) structure of tropical forests generates a diversity of light environments for canopy and understory trees. Understanding diurnal and seasonal changes in light availability is critical for interpreting measurements of net ecosystem exchange and improving ecosystem models. Here, we used the Discrete Anisotropic Radiative Transfer (DART) model to simulate leaf absorption of photosynthetically active radiation (lAPAR) for an Amazon forest. The 3-D model scene was developed from airborne lidar data, and local measurements of leaf reflectance, aerosols, and PAR were used to model lAPAR under direct and diffuse illumination conditions. Simulated lAPAR under clear sky and cloudy conditions was corrected for light saturation effects to estimate light utilization, the fraction of lAPAR available for photosynthesis. Although the fraction of incoming PAR absorbed by leaves was consistent throughout the year (0.80-0.82), light utilization varied seasonally (0.67-0.74), with minimum values during the Amazon dry season. Shadowing and light saturation effects moderated potential gains in forest productivity from increasing PAR during dry season months when the diffuse fraction from clouds and aerosols was low. Comparisons between DART and other models highlighted the role of 3-D forest structure to account for seasonal changes in light utilization. Our findings highlight how directional illumination and forest 3-D structure combine to influence diurnal and seasonal variability in light utilization, independent of further changes in leaf area, leaf age, or environmental controls on canopy photosynthesis. Changing illumination geometry constitutes an alternative biophysical explanation for observed seasonality in Amazon forest productivity without changes in canopy phenology.

The complex three-dimensional (3-D) structure of tropical forests generates a diversity of light environments for canopy and understory trees. Understanding diurnal and seasonal changes in light availability is critical for interpreting measurements of net ecosystem exchange and improving ecosystem models. Here, we used the Discrete Anisotropic Radiative Transfer (DART) model to simulate leaf absorption of photosynthetically active radiation (lAPAR) for an Amazon forest. The 3-D model scene was developed from airborne lidar data, and local measurements of leaf reflectance, aerosols, and PAR were used to model lAPAR under direct and diffuse illumination conditions. Simulated lAPAR under clear-sky and cloudy conditions was corrected for light saturation effects to estimate light utilization, the fraction of lAPAR available for photosynthesis. Although the fraction of incoming PAR absorbed by leaves was consistent throughout the year (0.80-0.82), light utilization varied seasonally (0.67-0.74), with minimum values during the Amazon dry season. Shadowing and light saturation effects moderated potential gains in forest productivity from increasing PAR during dry-season months when the diffuse fraction from clouds and aerosols was low. Comparisons between DART and other models highlighted the role of 3-D forest structure to account for seasonal changes in light utilization. Our findings highlight how directional illumination and forest 3-D structure combine to influence diurnal and seasonal variability in light utilization, independent of further changes in leaf area, leaf age, or environmental controls on canopy photosynthesis. Changing illumination geometry constitutes an alternative biophysical explanation for observed seasonality in Amazon forest productivity without changes in canopy phenology.

Due to rising energy demands and abundant untapped potential, hydropower projects are rapidly increasing in the Neotropics. This is especially true in the wet and rugged Andean Amazon, where regional governments are prioritizing new hydroelectric dams as the centerpiece of long-term energy plans. However, the current planning for hydropower lacks adequate regional and basin-scale assessment of potential ecological impacts. This lack of strategic planning is particularly problematic given the intimate link between the Andes and Amazonian flood plain, together one of the most species rich zones on Earth. We examined the potential ecological impacts, in terms of river connectivity and forest loss, of the planned proliferation of hydroelectric dams across all Andean tributaries of the Amazon River. Considering data on the full portfolios of existing and planned dams, along with data on roads and transmission line systems, we developed a new conceptual framework to estimate the relative impacts of all planned dams. There are plans for 151 new dams greater than 2 MW over the next 20 years, more than a 300% increase. These dams would include five of the six major Andean tributaries of the Amazon. Our ecological impact analysis classified 47% of the potential new dams as high impact and just 19% as low impact. Sixty percent of the dams would cause the first major break in connectivity between protected Andean headwaters and the lowland Amazon. More than 80% would drive deforestation due to new roads, transmission lines, or inundation. We conclude with a discussion of three major policy implications of these findings. 1) There is a critical need for further strategic regional and basin scale evaluation of dams. 2) There is an urgent need for a strategic plan to maintain Andes-Amazon connectivity. 3) Reconsideration of hydropower as a low-impact energy source in the Neotropics. PMID:22529979

Due to rising energy demands and abundant untapped potential, hydropower projects are rapidly increasing in the Neotropics. This is especially true in the wet and rugged Andean Amazon, where regional governments are prioritizing new hydroelectric dams as the centerpiece of long-term energy plans. However, the current planning for hydropower lacks adequate regional and basin-scale assessment of potential ecological impacts. This lack of strategic planning is particularly problematic given the intimate link between the Andes and Amazonian flood plain, together one of the most species rich zones on Earth. We examined the potential ecological impacts, in terms of river connectivity and forest loss, of the planned proliferation of hydroelectric dams across all Andean tributaries of the Amazon River. Considering data on the full portfolios of existing and planned dams, along with data on roads and transmission line systems, we developed a new conceptual framework to estimate the relative impacts of all planned dams. There are plans for 151 new dams greater than 2 MW over the next 20 years, more than a 300% increase. These dams would include five of the six major Andean tributaries of the Amazon. Our ecological impact analysis classified 47% of the potential new dams as high impact and just 19% as low impact. Sixty percent of the dams would cause the first major break in connectivity between protected Andean headwaters and the lowland Amazon. More than 80% would drive deforestation due to new roads, transmission lines, or inundation. We conclude with a discussion of three major policy implications of these findings. 1) There is a critical need for further strategic regional and basin scale evaluation of dams. 2) There is an urgent need for a strategic plan to maintain Andes-Amazon connectivity. 3) Reconsideration of hydropower as a low-impact energy source in the Neotropics. PMID:22529979

This handbook describes a methodology for reliability analysis of complex systems such as those which comprise the engineered safety features of nuclear power generating stations. After an initial overview of the available system analysis approaches, the handbook focuses on a description of the deductive method known as fault tree analysis. The following aspects of fault tree analysis are covered: basic concepts for fault tree analysis; basic elements of a fault tree; fault tree construction; probability, statistics, and Boolean algebra for the fault tree analyst; qualitative and quantitative fault tree evaluation techniques; and computer codes for fault tree evaluation. Also discussed are several example problems illustrating the basic concepts of fault tree construction and evaluation.

Similarly to other reptiles, snakes are ectothermic animals and depend exclusively on the environment for the maintenance of their physiological, biochemical and immunological processes. Thus, changes in biochemical values can be expected due to seasonal influence. Twenty-two adult specimens of Boa constrictor amarali kept in captivity were used. Blood collections were done in two different seasons: winter (July 2004) and summer (January 2005) for the following assays: uric acid, aspartate aminotransferase (AST), glucose, cholesterol, total protein, and serum protein electrophoresis. The mean biochemical results found in summer and winter, respectively, were: 6.3 ± 3.4 and 11.3 ± 6.2 mg/dL for uric acid; 28.7 ± 12.4 and 20.7 ± 16.2 UI/L for AST; 26.3 ± 17 and 17.4 ± 6.8 mg/dL for glucose; 67.3 ± 30.2 and 69.7 ± 38.5 mg/dL for cholesterol; and 5.9 ± 1.6 and 5.9 ± 1.4 g/dL for total protein. Results regarding electrophoresis in summer and winter, respectively, were: 1.9 ± 0.7 and 2.4 ± 0.6 g/dL for albumin; 0.7 ± 0.2 and 0.5 ± 0.2 g/dL for α-globulin; 1.5 ± 0.5 and 1.7 ± 0.6 g/dL for β-globulin; and 1.8 ± 0.5 and 1.5 ± 0.5 g/dL for γ-globulin. In the summer, there was a significant increase in AST and a decrease in uric acid (p < 0.05). Serum protein electrophoresis showed a significant increase in α-globulin fraction (p < 0.05) in the same season. There were not significant differences between seasons for the remaining variables. Based on these results, the period of the year must be considered in the interpretation of some biochemical values for these animals. PMID:21755171

Reptiles, particularly snakes, exhibit large and quantitatively similar increments in metabolic rate during muscular exercise and following a meal, when they are apparently inactive. The cardiovascular responses are similar during these two states, but the underlying autonomic control of the heart remains unknown. We describe both adrenergic and cholinergic tonus on the heart during rest, during enforced activity and during digestion (24-36 h after ingestion of 30 % of their body mass) in the snake Boa constrictor. The snakes were equipped with an arterial catheter for measurements of blood pressure and heart rate, and autonomic tonus was determined following infusion of the beta-adrenergic antagonist propranolol (3 mg kg(-1)) and the muscarinic cholinoceptor antagonist atropine (3 mg kg(-1)). The mean heart rate of fasting animals at rest was 26.4+/-1.4 min(-1), and this increased to 36.1+/-1.4 min(-1) (means +/- S.E.M.; N=8) following double autonomic block (atropine and propranolol). The calculated cholinergic and adrenergic tones were 60.1+/-9.3 % and 19.8+/-2.2 %, respectively. Heart rate increased to 61.4+/-1.5 min(-1) during enforced activity, and this response was significantly reduced by propranolol (maximum values of 35.8+/-1.6 min(-1)), but unaffected by atropine. The cholinergic and adrenergic tones were 2.6+/-2.2 and 41.3+/-1.9 % during activity, respectively. Double autonomic block virtually abolished tachycardia associated with enforced activity (heart rate increased significantly from 36.1+/-1.4 to 37.6+/-1.3 min(-1)), indicating that non-adrenergic, non-cholinergic effectors are not involved in regulating heart rate during activity. Blood pressure also increased during activity. Digestion was accompanied by an increase in heart rate from 25.6+/-1.3 to 47.7+/-2.2 min(-1) (N=8). In these animals, heart rate decreased to 44.2+/-2.7 min(-1) following propranolol infusion and increased to 53.9+/-1.8 min(-1) after infusion of atropine, resulting in small

Isoprene photooxidation is a major driver of atmospheric chemistry over forested regions. Isoprene reacts with hydroxyl radicals (OH) and molecular oxygen to produce isoprene peroxy radicals (ISOPOO). These radicals can react with hydroperoxyl radicals (HO2) to dominantly produce hydroxyhydroperoxides (ISOPOOH). They can also react with nitric oxide (NO) to largely produce methyl vinyl ketone (MVK) and methacrolein (MACR). Unimolecular isomerization and bimolecular reactions with organic peroxy radicals are also possible. There is uncertainty about the relative importance of each of these pathways in the atmosphere and possible changes because of anthropogenic pollution. Herein, measurements of ISOPOOH and MVK + MACR concentrations are reported over the central region of the Amazon basin during the wet season. The research site, downwind of an urban region, intercepted both background and polluted air masses during the GoAmazon2014/5 Experiment. Under background conditions, the confidence interval for the ratio of the ISOPOOH concentration to that of MVK + MACR spanned 0.4–0.6. This result implies a ratio of the reaction rate of ISOPOO with HO2 to that with NO of approximately unity. A value of unity is significantly smaller than simulated at present by global chemical transport models for this important, nominally low-NO, forested region of Earth. Under polluted conditions, when the concentrations of reactive nitrogen compounds were high (>1 ppb), ISOPOOH concentrations dropped below the instrumental detection limit (<60 ppt). This abrupt shift in isoprene photooxidation, sparked by human activities, speaks to ongoing and possible future changes in the photochemistry active over the Amazon rainforest.

Isoprene photooxidation is a major driver of atmospheric chemistry over forested regions. Isoprene reacts with hydroxyl radicals (OH) and molecular oxygen to produce isoprene peroxy radicals (ISOPOO). These radicals can react with hydroperoxyl radicals (HO2) to dominantly produce hydroxyhydroperoxides (ISOPOOH). They can also react with nitric oxide (NO) to largely produce methyl vinyl ketone (MVK) and methacrolein (MACR). Unimolecular isomerization and bimolecular reactions with organic peroxy radicals are also possible. There is uncertainty about the relative importance of each of these pathways in the atmosphere and possible changes because of anthropogenic pollution. Herein, measurements of ISOPOOH and MVK + MACR concentrations are reported over the central region of the Amazon basin during the wet season. The research site, downwind of an urban region, intercepted both background and polluted air masses during the GoAmazon2014/5 Experiment. Under background conditions, the confidence interval for the ratio of the ISOPOOH concentration to that of MVK + MACR spanned 0.4-0.6. This result implies a ratio of the reaction rate of ISOPOO with HO2 to that with NO of approximately unity. A value of unity is significantly smaller than simulated at present by global chemical transport models for this important, nominally low-NO, forested region of Earth. Under polluted conditions, when the concentrations of reactive nitrogen compounds were high (>1 ppb), ISOPOOH concentrations dropped below the instrumental detection limit (<60 ppt). This abrupt shift in isoprene photooxidation, sparked by human activities, speaks to ongoing and possible future changes in the photochemistry active over the Amazon rainforest. PMID:27185928

A flight mission of NASA GSFC's Laser Vegetation Imaging Sensor (LVIS) is planned for June-August 2003 in the Amazon region of Brazil. The goal of this flight mission is to map the vegetation height and structure and ground topography of a large area of the Amazon. This data will be used to produce maps of true ground topography, vegetation height, and estimated above-ground biomass and for comparison with and potential calibration of Synthetic Aperture Radar (SAR) data. Approximately 15,000 sq. km covering various regions of the Amazon will be mapped. The LVIS sensor has the unique ability to accurately sense the ground topography beneath even the densest of forest canopies. This is achieved by using a high signal-to-noise laser altimeter to detect the very weak reflection from the ground that is available only through small gaps in between leaves and between tree canopies. Often the amount of ground signal is 1% or less of the total returned echo. Once the ground elevation is identified, that is used as the reference surface from which we measure the vertical height and structure of the vegetation. Test data over tropical forests have shown excellent correlation between LVIS measurements and biomass, basal area, stem density, ground topography, and canopy height. Examples of laser altimetry data over forests and the relationships to biophysical parameters will be shown. Also, recent advances in the LVIS instrument will be discussed.

Commercial rubber (Hevea Brasiliensis) is originally native to the Amazon rainforest and it has become one of the important commercial crops in Mainland Southeast Asia. Similarly to some trees species in Amazon but quite distinctly from other native forests in Southeast Asia, rubber tree sheds its leaves in the middle of dry season and flushes new leaves before the onset of the wet season. Moreover, the mountane mainland Southeast Asia is heavily influenced by the monsoon climate which has most the precipitation in the wet season while almost no rainfall in the dry season. It is believed that the phenology pattern of rubber interacted with local climate would not only regulate the seasonal rubber plantation structures but also further alter the local energy and water budget. However, it is still lack of solid understandings of how the phenology patterns in terms of the leaf area index (LAI) changes of the rubber tree response to environmental drivers. The study tries to shed lights on the issue from analyses of a various types of in-situ field data combined with 3 years' tower flux measurements collected within the rubber plantations. It concludes that: 1) Both the monthly tree height increment and the monthly biomass accumulation are highly correlated with the LAI changes, which have the low rate of changes in the dry season versus the relative high rate of changes in the wet season; 2) the daily evapotranspiration (ET) of the rubber tree is very sensitive to the daily LAI changes in the dry season (R2 > 0.9); 3) the LAI changes, especially the leaf drops, are majorly determined by the accumulated precipitation in the past three months.

The rare earth element (REE) concentrations of the dissolved and particulate fractions and bed sediment between Manaus and Santarém in the Amazon River, and in some major tributaries, were evaluated. A very important zone in the Amazon basin, the encontro das aguas area where the Rio Solimões and the Rio Negro meet, was especially sampled. Different size fractions were isolated by ultrafiltration. Water samples were collected at different stages of the mixing. Three groups of waters are distinguished: group I has a low pH (<5·5) and is represented by the Negro basin rivers; group II has alkalinity less than 0·2 meq l-1 and is represented by the Rios Tapajós and Trombetas; group III has high alkalinity (>0·2 meq l-1) and higher pH (>6·5) and is represented by the Madeira basin rivers, the Solimões and the Amazon. The highest dissolved REE concentration is in the Rio Negro and the lowest in the Rio Tapajós (dissolved REEs vary by more than a factor of ten). The solubility of REEs is pH dependent: in river waters with a pH < 6 the Ce concentration is twice that of La, whereas in rivers with a higher pH the concentrations of Ce and La are similar. Dissolved REE concentrations are positively correlated with the dissolved organic carbon. Correlations between Fe, Al, and La suggest that La is associated with Al (Fe)-rich organic matter and/or related to dissolved Fe-rich inorganic material. Dissolved REEs normalized to North American shale composite show an enrichment in intermediate/heavy REEs (from Eu to Er), except for the shields rivers (such as Rio Negro and Rio Trombetas). Both of them are depleted in heavy REEs and show a relative Ce enrichment. In contrast, for the Andeans rivers (such as Rio Solimões), light REEs are slightly depleted and a negative Ce relative anomaly occurs. The pattern of the Amazon River at Óbidos confirms the major influence of the Rios Negro and Solimões with REE fractionation. For the Rio Negro, 60 to 70% of REEs are

The article addresses the Amazon Sanitation Plan and the political context in which it was formulated between 1940 and 1941. It examines the role of Getúlio Vargas, the activities of the plan's main protagonists (such as Evandro Chagas, João de Barros Barreto, and Valério Konder), its key proposals, and its demise as of 1942 upon creation of the Special Public Health Service (Sesp), which grew out of cooperation agreements between Brazil and the US following both nations' involvement in World War II. A reproduction of the Plan as published in the Arquivos de Higiene in 1941 is included. PMID:18783151

A simulation of the climate response to Amazon deforestation has been carried out. Precipitation is decreased on the average by 25 percent or 1.4 mm/day, with ET and runoff both decreasing by 0.7 mm/day. Modifications of surface energy balance through change of albedo and roughness are complicated by cloud feedbacks. The initial decrease of the absorption of solar radiation by higher surface albedos is largely cancelled by a reduction in cloud cover, but consequent reduction in downward longwave has a substantial impact on surface energy balance. Smoke aerosols might have an effect comparable to deforestation during burning season. 8 refs.

The aim of this study was to evaluate the parasitemia variation of three Hepatozoon species in Brazilian snakes. This study was conducted between 2001 and 2003 and included Hepatozoon terzii from Boa constrictor amarali, and Hepatozoon migonei and Hepatozoon cyclagrasi from Hydrodynastes gigas. It was observed that the parasitemia tended to decrease in all three Hepatozoon species but the parasites were not eliminated. This data suggest that Hepatozoon infection may be similar to Toxoplasma gondii infection, in that it persists throughout host life. PMID:15999279

The history of anthropology has tended towards two extremes in its analyses of the works of Franz Boas: aggrandizement or underestimation. This disparity can be explained by the author's liminal relationship with two research approaches in anthropology: universalist theories (evolutionism, difussionism, racialism, etc.) and culturalist theories, prevalent between the late nineteenth and early twentieth centuries. With this argument in mind, the article discusses the emergence of the Boasian concept of culture and endeavors to show how this concept proves both possible and impossible within the author's own work. PMID:22012102

The aim of this study is to explore whether matrices and MP trees used to produce systematic categories of organisms could be useful to produce categories of ideas in history of science. We study the history of the use of trees in systematics to represent the diversity of life from 1766 to 1991. We apply to those ideas a method inspired from coding homologous parts of organisms. We discretize conceptual parts of ideas, writings and drawings about trees contained in 41 main writings; we detect shared parts among authors and code them into a 91-characters matrix and use a tree representation to show who shares what with whom. In other words, we propose a hierarchical representation of the shared ideas about trees among authors: this produces a “tree of trees.” Then, we categorize schools of tree-representations. Classical schools like “cladists” and “pheneticists” are recovered but others are not: “gradists” are separated into two blocks, one of them being called here “grade theoreticians.” We propose new interesting categories like the “buffonian school,” the “metaphoricians,” and those using “strictly genealogical classifications.” We consider that networks are not useful to represent shared ideas at the present step of the study. A cladogram is made for showing who is sharing what with whom, but also heterobathmy and homoplasy of characters. The present cladogram is not modelling processes of transmission of ideas about trees, and here it is mostly used to test for proximity of ideas of the same age and for categorization. PMID:23950877

Observed increases in intact Amazon forest biomass, averaging ~0.6 Mg C ha-1 yr-1, have led to suggestions that a forest sink may be of a magnitude large enough to substantially offset Amazonian land- use sources. The mechanism which explains the biomass increase remains unclear. Here we use a synthetic approach, combining remote sensing, intensive field observations, and simulation modeling to elucidate the impact of disturbance on forest structure and changes in biomass. EO-1 Hyperion data and existing field data will be analyzed to generate broad scale disturbance maps. These maps will integrate information from field and remote sensing investigations, spanning a gradient from individual trees to landscape-scale events. Intensive field work will quantify the mortality from these disturbance events. Mapped data will be used to parameterize the height-structured Ecosystem Demography model (ED). ED offers a general method of scaling stochastic individual-based models of ecosystem dynamics to regional scales. Model runs of ED with synthetic mortality rates brackets the range of potential carbon flux attributable to disturbance, mortality, and recovery. The parameterization of the model with generated disturbance maps will provide a best estimate biomass gain due to disturbance patterns across the Amazon.

The fluxes and concentrations of atmospheric sulfur species were determined at ground level and from aircraft over the Amazon Basin during the 1987 wet season, providing a comprehensive description of the sulfur cycle over a remote tropical region. The vertical profile of dimethylsulfide (DMS) during the wet season was found to be very similar to that measured during the dry season, suggesting little seasonal variation in DMS fluxes. The concentrations of H2S were almost an order of magnitude higher than those of DMS, which makes H2S the most important biogenic source species in the atmosheric sulfur cycle over the Amazon Basin. Using the gradient-flux approach, the flux of DMS at the top of the tree canopy was estimated. The canopy was a source of DMS during the day, and a weak sink during the night. Measurements of sulfur gas emissions from soils, using the chamber method, showed very small fluxes, consistent with the hypothesis that the forest canopy is the major source of sulfur gases. The observed soil and canopy emission fluxes are similar to those measured in temperate regions. The concentrations of SO2 and sulfate aerosol in the wet season atmosphere were similar to dry season values.

Using a broad definition of trees, the evolutionary origins of trees in a nutritional context is considered using data from the fossil record and molecular phylogeny. Trees are first known from the Late Devonian about 380 million years ago, originated polyphyletically at the pteridophyte grade of organization; the earliest gymnosperms were trees, and trees are polyphyletic in the angiosperms. Nutrient transporters, assimilatory pathways, homoiohydry (cuticle, intercellular gas spaces, stomata, endohydric water transport systems including xylem and phloem-like tissue) and arbuscular mycorrhizas preceded the origin of trees. Nutritional innovations that began uniquely in trees were the seed habit and, certainly (but not necessarily uniquely) in trees, ectomycorrhizas, cyanobacterial, actinorhizal and rhizobial (Parasponia, some legumes) diazotrophic symbioses and cluster roots. PMID:20581011

This paper introduces the IND Tree Package to prospective users. IND does supervised learning using classification trees. This learning task is a basic tool used in the development of diagnosis, monitoring and expert systems. The IND Tree Package was developed as part of a NASA project to semi-automate the development of data analysis and modelling algorithms using artificial intelligence techniques. The IND Tree Package integrates features from CART and C4 with newer Bayesian and minimum encoding methods for growing classification trees and graphs. The IND Tree Package also provides an experimental control suite on top. The newer features give improved probability estimates often required in diagnostic and screening tasks. The package comes with a manual, Unix 'man' entries, and a guide to tree methods and research. The IND Tree Package is implemented in C under Unix and was beta-tested at university and commercial research laboratories in the United States.

Provides details on the chemical composition of trees including a definition of wood. Also includes an activity on anthocyanins as well as a discussion of the resistance of wood to solvents and chemicals. Lists interesting products from trees. (DDR)

Precipitation recycling is the contribution of evaporation within a region to precipitation in that same region. The recycling rate is a diagnostic measure of the potential for interactions between land surface hydrology and regional climate. In this paper we present a model for describing the seasonal and spatial variability of the recycling process. The precipitation recycling ratio, rho, is the basic variable in describing the recycling process. Rho is the fraction of precipitation at a certain location and time which is contributed by evaporation within the region under study. The recycling model is applied in studyiing the hydrologic cycle in the Amazon basin. It is estimated that about 25% of all the rain that falls in the Amazon basin is contributed by evaporation within the basin. This estimate is based on analysis of a data set supplied by the European Centre for Medium-range Weather Forecasts (ECMWF). The same analysis is repeated using a different data set from the Geophysical Fluid Dynamics Laboratory (GFDL). Based on this data set, the recycling ratio is estimated to be 35%. The seasonal variability of the recycling ratio is small compared with the yearly average. The new estimates of the recycling ratio are compared with results of previous studies, and the differences are explained.

Pecten Brazil overcame numerous obstacles to drill two exploratory wells in the Amazon Basin last year. These included: The threat of low water in normally navigable rivers. Dense jungle growth at both locations. Lack of suitable roads for heavy hauling. Inconvenient distances from supply points. An unusual basalt formation responsible for unique drilling problems. Hundreds of helicopter lifts to move drilling rigs, supplies, and personnel. Pecten contracted with Petrobras, the Brazilian national oil company, to evaluate three blocks in the Amazon jungle, each about 68 miles (110 km) on a side, through seismic study and ultimate drilling. Planning for the drilling phase got started on March 17, 1981 with December 1 targeted as spud date for the first well. Actual spud date was November 25, 5 days ahead of schedule, in spite of all obstacles. Pecten has a mid-Amazonas block now under seismic investigation for possible exploratory drilling. Logistics problems in this one provide new difficulties, as the area is extremely wet. Most work is carried on by boat. The company is also looking offshore Bahia, testing the possible extension of the Renconcavo basin. Two wells have already provided good shows of a high pour point oil, with flow rates from 400 to 1,000 b/d. Another area of interest to Pecten is offshore Rio Grande do Norte.

The first recorded observations of bed material of the Amazon River were made in 1843 by Lt William Lewis Herndon of the US Navy, when he travelled the river from its headwaters to its mouth, sounding its depths, and noting the nature of particles caught in a heavy grease smeared to the bottom of his sounding weight1. He reported the bed material of the river to be mostly sand and fine gravel. Oltman and Ames took samples at a few locations in 1963 and 1964, and reported the bed material at O??bidos, Brazil, to be fine sands, with median diameters ranging from 0.15 to 0.25 mm (ref. 2). We present here a summary of particle-size analyses of samples of streambed material collected from the Amazon River and its major tributaries along a reach of the river from Iquitos in Peru, ???3,500 km above Macapa?? Brazil, to a point 220 km above Macapa??3. ?? 1980 Nature Publishing Group.

The Amazon basin comprises the largest river ecosystem in the world (7 million km 2) with annual high and low water peaks and a constant temperature near 29°C. Some 2000 fish species and 40 species of free-living copepods are known to occur in Amazonia. The free-living forms serve as food for most larval fishes and some adults, but they also transmit several parasites including representatives of the nematode family Camallanidae. About three dozen species of parasitic copepods have been described from the Brazilian Amazon. Females of Amazonian parasitic copepods are found on skin, gill filaments, gill rakers or within the nasal fossae. Parasitic copepods are found on fishes that are from a few millimeters long up to those over 2 m in length and they are usually quite host specific. All have body pigmentation in different patterns and colors (frequently blues, such as cerulean, cobalt, spectrum, smalt or campanula). It is suggested that the coloration serves to attract specific host fish. Copepods have evolved adaptations for attachment and feeding, especially in the second antennae and endopods. Examples of progenesis, phoresis and commensalism are shown. Some species produce pathology such as a tourniquet effect, hyperplasia, blood loss and anemia, and can kill fishes by limiting their respiration.

IND computer program introduces Bayesian and Markov/maximum-likelihood (MML) methods and more-sophisticated methods of searching in growing trees. Produces more-accurate class-probability estimates important in applications like diagnosis. Provides range of features and styles with convenience for casual user, fine-tuning for advanced user or for those interested in research. Consists of four basic kinds of routines: data-manipulation, tree-generation, tree-testing, and tree-display. Written in C language.

Regional analyses of Amazon cattle pasture biogeochemistry are difficult due to the complexity of human, edaphic, biotic and climatic factors and persistent cloud cover in satellite observations. We developed a method to estimate key biophysical properties of Amazon pastures using hyperspectral reflectance data and photon transport inverse modeling. Remote estimates of live and senescent biomass were strongly correlated with plant-available forms of soil phosphorus and calcium. These results provide a basis for monitoring pasture condition and biogeochemistry in the Amazon Basin using spaceborne hyperspectral sensors.

Regional analyses of Amazon cattle pasture biogeochemistry are difficult due to the complexity of human, edaphic, biotic and climatic factors and persistent cloud cover in satellite observations. We developed a method to estimate key biophysical properties of Amazon pastures using hyperspectral reflectance data and photon transport inverse modeling. Remote estimates of live and senescent biomass were strongly correlated with plant-available forms of soil phosphorus and calcium. These results provide a basis for monitoring pasture condition and biogeochemistry in the Amazon Basin using spaceborne hyperspectral sensors.

The first measurements of the flow of the Amazon River were made in July 1963 as a joint project of the University of Brazil, the Brazilian Navy, and the U.S. Geological Survey. The discharge of the Amazon River at Obidos was 7,640,000 cfs at an annual flood stage somewhat lower than the average. For comparison the maximum known discharge of the Mississippi River at Vicksburg is about 2,300,000 cfs. Dissolved-solids concentrations and sediment loads of the Amazon River and of several major tributaries were found to be low.

Data for /sup 226/Ra and /sup 228/Ra in the Amazon River system show that the activity of each radium isotope is strongly correlated with barium concentrations. Two trends are apparent, one for rivers which drain shield areas and another for all other rivers. These data suggest that there has been extensive fractionation of U, Th, and Ba during weathering in the Amazon basin. The /sup 226/Ra data fit a flux model for the major ions indicating that /sup 226/Ra behaves conservatively along the main channel of the Amazon River.

In this view of the Amazon River Mouth (0.0, 51.0W), a large sediment plume can be seen expanding outward into the Atlantic Ocean. The sediment plume can be seen hugging the coast north of the delta as a result of the northwest flowing coastal Guyana Current. In recent years, the flow of the Amazon has become heavily laden with sediment as soil runoff from the denuded landscape of the interior enters the Amazon River (and other rivers) drainage system.

Sinop region were successfully applied to forty Landsat images covering other regions of the Brazilian Amazon. Standard fractions and NDFI images were computed for these other regions and both physically and spatially consistent results were obtained. An automated decision tree classification using genetic algorithm was implemented successfully to classify land cover types and sub-classes of degraded forests. The remote sensing techniques proposed in this dissertation are fully automated and have the potential to be used in tropical forest monitoring programs.

Trees are great inspiration for artists. Many art teachers find themselves inspired and maybe somewhat obsessed with the natural beauty and elegance of the lofty tree, and how it changes through the seasons. One such tree that grows in several regions and always looks magnificent, regardless of the time of year, is the birch. In this article, the…

This paper is a survey of the author's work on illumination and shadows under trees, including the effects of sky illumination, sun penumbras, scattering in a misty atmosphere below the trees, and multiple scattering and transmission between leaves. It also describes a hierarchical image-based rendering method for trees.

This bulletin describes 46 of the more common trees found in Minnesota's forests and windbreaks. The bulletin contains two tree keys, a summer key and a winter key, to help the reader identify these trees. Besides the two keys, the bulletin includes an introduction, instructions for key use, illustrations of leaf characteristics and twig…

This article describes the author's experience in implementing a Wish Tree project in her school in an effort to bring the school community together with a positive art-making experience during a potentially stressful time. The concept of a wish tree is simple: plant a tree; provide tags and pencils for writing wishes; and encourage everyone to…

Describes an activity to develop students' skills of observation and recordkeeping by studying the growth of a tree's leaves during the spring. Children monitor the growth of 11 tress over a 2-month period, draw pictures of the tree at different stages of growth, and write diaries of the tree's growth. (MDH)

The CO2 emitted by respiration in a tree woody tissue (stem, branch, or root) is usually assumed to diffuse directly out to the atmosphere. Given that the internal concentrations of CO2 are one to two orders of magnitude higher than the atmospheric concentration, a reuse of this respired carbon can be beneficial to plants. We have developed a new method to track the fraction of respired CO2 not emitted from stems and branches, from the ratio of the CO2 efflux to the O2 influx. This ratio, which we defined as the apparent respiratory quotient (ARQ), is expected to equal 1.0 if carbohydrates are the substrate for respiration, and all respired CO2 is directly emitted. Using this approach we have recently showed that ~30% of the CO2 respired by Amazon forest tree stems was not directly emitted. In the current study we have applied this approach to 5 tree species living in Mediterranean climate, and have performed seasonal and diurnal ARQ measurements, at different heights along the stem and branches. We found different seasonal variations in the ARQ of riparian versus drought-resilient trees. In addition, the ARQ diurnal cycle, together with the measurements in different heights, indicate that a considerable fraction of the CO2 not emitted is recycled within the tree.

A new hypothesis concerning the mechanism of the P. rufescens' slave-raids, is proposed. (i) The so-called pseudo-scouting does not contribute to the slave-raids. (ii) The direction of the raid is determined by the random movement of the most easily aroused individuals - the so-called activists. (iii) Once the direction has been set the army marches straight ahead and returns by the same road orienting itself by visual stimuli; single individuals who lag behind can however follow the scent-trial which had been left by the army. (iv) The slave-capturing instinct of the amazons is not directed at the abduction of pupae alone but also and even perhaps primarily at the abduction of mature individuals belonging to the slave-species; that the amazons bring almost only pupae is caused by the fact that the mature individuals offer resistance and are consequently a more troublesome prey. PMID:747130

Topological techniques provide robust tools for data analysis. They are used, for example, for feature extraction, for data de-noising, and for comparison of data sets. This chapter concerns contour trees, a topological descriptor that records the connectivity of the isosurfaces of scalar functions. These trees are fundamental to analysis and visualization of physical phenomena modeled by real-valued measurements. We study the parallel analysis of contour trees. After describing a particular representation of a contour tree, called local{global representation, we illustrate how di erent problems that rely on contour trees can be solved in parallel with minimal communication.

At the estuary there are several mechanisms that cause turbulence: influence of solid contours (estuary bottom and shores), speed vertical shearing (fluid inside), wind shearing stress (free surface) and surface and internal gravity waves. Turbulence intensity controls vertical distribution of estuary water mass property concentration. As flow into the estuary takes place during the transition or turbulent regimen, produced by small space and time scale movements, entrainment, turbulent scattering and advection are the processes responsible for fresh water mixing up with the sea and for local salinity variation, as well as for concentration of natural properties and man-made ones. According to this focus, we shall describe general circulation, conveyance and mixing characteristics of the Amazon low estuary waters. Amazon estuary shows unusual characteristics: it is of vast length and enormous outflow. It is extremely wide - 150 Km - and its discharge into the Atlantic amounts to 180,000 m3s-1 (Otman, 1968, Figueiredo et al, 1991), which means 18% of all water discharged by rivers into oceans; this is the largest punctual source of fresh water for oceans (Milliman and Meade, 1983). Maximum outflow is 2.5 x 105 m3s-1, and it happens at the end of May. Minimum outflow is 1.2 x 105 m3 s-1, and it takes place in November. At Amazon River, the Mixing Zone occurs where the Coastal Zone usually is. The reason for that is the extension of fresh water plume moves Northeast for over 1000 Km (Gibbs, 1970; Muller-Karger et al 1988). This is the most extensive estuarine plume ever found in the ocean. During low fluvial discharge (June-November) plume reaches 300 Km; however, on high discharge (November-May) plume reaches 500 Km. Plume already is 3 to 10 m thick and 80 to 300 Km wide (Lentz and Limeburner, 1995). From June to January plume moves towards Africa, from whence 70% of it goes east carried by North Brazil Current retroflection and 30% goes towards the Caribbean. From

The growth of a pine tree is examined by preparing "tree cookies" (cross-sectional disks) between whorls of branches. The use of Christmas trees allows the tree cookies to be obtained with inexpensive, commonly available tools. Students use the tree cookies to investigate the annual growth of the tree and how it corresponds to the number of whorls…

The utilization of satellite remote sensing in forestry is reviewed with emphasis on studies performed for the Brazilian Amazon Region. Timber identification, deforestation, and pasture degradation after deforestation are discussed.

Regional mapping of the Amazon basin using imaging radar is described. Two 60-day periods of radar mapping will be conducted, one in 1995, and one in 1996. One period will view the low-water season, and the other will view during the high-flood season. The main objective of the JAMMS project is to generate a regional map showing inundation throughout the Amazon Basin by comparing the two data sets.

The diurnal and seasonal water cycles in the Amazon remain poorly simulated in general circulation models, exhibiting peak evapotranspiration in the wrong season and rain too early in the day. We show that those biases are not present in cloud-resolving simulations with parameterized large-scale circulation. The difference is attributed to the representation of the morning fog layer, and to more accurate characterization of convection and its coupling with large-scale circulation. The morning fog layer, present in the wet season but absent in the dry season, dramatically increases cloud albedo, which reduces evapotranspiration through its modulation of the surface energy budget. These results highlight the importance of the coupling between the energy and hydrological cycles and the key role of cloud albedo feedback for climates over tropical continents. PMID:26324902

The diurnal and seasonal water cycles in the Amazon remain poorly simulated in general circulation models, exhibiting peak evapotranspiration in the wrong season and rain too early in the day. We show that those biases are not present in cloud-resolving simulations with parameterized large-scale circulation. The difference is attributed to the representation of the morning fog layer, and to more accurate characterization of convection and its coupling with large-scale circulation. The morning fog layer, present in the wet season but absent in the dry season, dramatically increases cloud albedo, which reduces evapotranspiration through its modulation of the surface energy budget. These results highlight the importance of the coupling between the energy and hydrological cycles and the key role of cloud albedo feedback for climates over tropical continents. PMID:26324902

Heavy smoke from forest fires in the Amazon was observed to reduce cloud droplet size and so delay the onset of precipitation from 1.5 kilometers above cloud base in pristine clouds to more than 5 kilometers in polluted clouds and more than 7 kilometers in pyro-clouds. Suppression of low-level rainout and aerosol washout allows transport of water and smoke to upper levels, where the clouds appear "smoking" as they detrain much of the pollution. Elevating the onset of precipitation allows invigoration of the updrafts, causing intense thunderstorms, large hail, and greater likelihood for overshooting cloud tops into the stratosphere. There, detrained pollutants and water vapor would have profound radiative impacts on the climate system. The invigorated storms release the latent heat higher in the atmosphere. This should substantially affect the regional and global circulation systems. Together, these processes affect the water cycle, the pollution burden of the atmosphere, and the dynamics of atmospheric circulation. PMID:14988556

The CASL Level 1 Milestone CASL.P4.01, successfully completed in December 2011, aimed to 'conduct, using methodologies integrated into VERA, a detailed sensitivity analysis and uncertainty quantification of a crud-relevant problem with baseline VERA capabilities (ANC/VIPRE-W/BOA).' The VUQ focus area led this effort, in partnership with AMA, and with support from VRI. DAKOTA was coupled to existing VIPRE-W thermal-hydraulics and BOA crud/boron deposit simulations representing a pressurized water reactor (PWR) that previously experienced crud-induced power shift (CIPS). This work supports understanding of CIPS by exploring the sensitivity and uncertainty in BOA outputs with respect to uncertain operating and model parameters. This report summarizes work coupling the software tools, characterizing uncertainties, and analyzing the results of iterative sensitivity and uncertainty studies. These studies focused on sensitivity and uncertainty of CIPS indicators calculated by the current version of the BOA code used in the industry. Challenges with this kind of analysis are identified to inform follow-on research goals and VERA development targeting crud-related challenge problems.

From California sequoia, to Australian eucalyptus, to the outstanding diversity of Amazonian forests, trees are fundamental to many processes in ecology and evolution. Trees define the communities that they inhabit, are host to a multiplicity of other organisms and can determine the ecological dynamics of other plants and animals. Trees are also at the heart of major patterns of biodiversity such as the latitudinal gradient of species diversity and thus are important systems for studying the origin of new plant species. Although the role of trees in community assembly and ecological succession is partially understood, the origin of tree diversity remains largely opaque. For instance, the relative importance of differing habitats and phenologies as barriers to hybridization between closely related species is still largely uncharacterized in trees. Consequently, we know very little about the origin of trees species and their integrity. Similarly, studies on the interplay between speciation and tree community assembly are in their infancy and so are studies on how processes like forest maturation modifies the context in which reproductive isolation evolves. In this issue of Molecular Ecology, Lindtke et al. (2014) and Lagache et al. (2014) overcome some traditional difficulties in studying mating systems and sexual isolation in the iconic oaks and poplars, providing novel insights about the integrity of tree species and on how ecology leads to variation in selection on reproductive isolation over time and space. PMID:25155715

We combined measurements of tree growth and carbon dioxide exchange to investigate the effects of selective logging on the Aboveground Live Biomass (AGLB) of a tropical rain forest in the Amazon. Most of the measurements began at least 10 months before logging and continued at least 36 months after logging. The logging removed ˜15% of the trees with Diameter at Breast Height (DBH) greater than 35 cm, which resulted in an instantaneous 10% reduction in AGLB. Both wood production and mortality increased following logging, while Gross Primary Production (GPP) was unchanged. The ratio of wood production to GPP (the wood Carbon Use Efficiency or wood CUE) more than doubled following logging. Small trees (10 cm < DBH < 35 cm) accounted for most of the enhanced wood production. Medium trees (35 cm < DBH < 55 cm) that were within 30 m of canopy gaps created by the logging also showed increased growth. The patterns of enhanced growth are most consistent with logging-induced increases in light availability. The AGLB continued to decline over the study, as mortality outpaced wood production. Wood CUE and mortality remained elevated throughout the 3 years of postlogging measurements. The future trajectory of AGLB and the forest's carbon balance are uncertain, and will depend on how long it takes for heterotrophic respiration, mortality, and CUE to return to prelogging levels.

Metabolism and phenology of tropical forests significantly influence global dynamics of climate, carbon and water. However, there is still lack of mechanistic understanding of the controls on tropical forest metabolism, particularly at individual tree level. In this study, we are interested in investigating (1) what is the seasonal pattern of woody growth for tropical trees and (2) what is the mechanistic controls onwoody growth at individual level?To explore the above questions,we use two data sources from an evergreen tropical forest KM67 site (near Santarem, Brazil). They are: (1) image time series from a tower mounted RGB imaging system, with images recordedin10 minutes interval since October 2013.Images near local noon homogeneous diffuse lighting were selectedfor leaf phenologymonitoring; (2) ground based bi-weekly biometry survey (via dendrometry band technique) for 25 trees from random sampling since September 2013. 12 among 25 trees are within the tower mounted camera image view. Our preliminary resultsdemonstrate that 20 trees among 25 trees surveyed significantly increase woody growth (or "green up") in dry season. Our results also find thatamong those 20 trees, 12 trees reaches the maximum woody increment rate in late dry season with a mean DBH (Diameter at Breast Height) around 30 cm,while 8 trees reaching the maximum in the middle of wet season, with a mean DBH around 90 cm. This study,though limited in the sample size, mightprovide another line of evidence that Amazon rainforests "green up" in dry season. As for mechanistic controls on tropical tree woody control, we hypothesize both climate and leaf phenology control individual woody growth. We would like to link both camera based leaf phenology and climate data in the next to explorethe reason as to the pattern found in this study that bigger trees might have different seasonal growth pattern as smaller trees.

The broad geographic range of many Neotropical rain forest tree species implies excellent dispersal abilities or range establishment that preceded the formation of current dispersal barriers. In order to initiate historical analyses of such widespread Neotropical trees, we sequenced the nuclear ribosomal spacer (ITS) region of Symphonia globulifera L. f. (Clusiaceae) from populations spanning the Neotropics and western Africa. This rain forest tree has left unmistakable Miocene fossils in Mesoamerica (15.5-18.2 Ma) and in South America ( approximately 15 Ma). Although marine dispersal of S. globulifera is considered improbable, our study establishes three marine dispersal events leading to the colonization of Mesoamerica, the Amazon basin, and the West Indies, thus supporting the paleontological data. Our phylogeographic analysis revealed the spatial extent of the three Neotropical S. globulifera clades, which represent trans-Andes (Mesoamerica+west Ecuador), cis-Andes (Amazonia+Guiana), and the West Indies. Strong phylogeographic structure found among trans-Andean populations of S. globulifera stands in contrast to an absence of ITS nucleotide variation across the Amazon basin and indicates profound regional differences in the demographic history of this rain forest tree. Drawing from these results, we provide a historical biogeographic hypothesis to account for differences in the patterns of beta diversity within Mesoamerican and Amazonian forests. PMID:14737707

Forest productivity, tree turnover time and above ground biomass vary across the Amazon Basin in an east-west gradient in a pattern which coincides with variations in soil nutrient availability and geology. Forest productivity rates are higher on the most nutrient rich soils close to the Andes while is lower in the ancient, highly weathered soils of central Amazonia. On the other hand above ground biomass is lower in the most productive forests and higher on the least, this being a consequence of higher tree turnover rates in the forests over less weathered and nutrient rich soils. Major geological events have influenced Amazonian soil characteristics profoundly and play an important role in explaining Basin-wide variations in forest biomass, growth and stem turnover rates. Here we show how geology and soil development combine to shape the functioning of Amazonian forests and its carbon stocks and fluxes. To assess the importance of edaphic properties in affect forest structure and dynamics, soil samples were collected in a total of 154 different forest plots across nine different Amazonian countries. Samples were analyzed for exchangeable cations, C, N, pH with various P fractions and soil physical properties also determined. Overall, forest structure and dynamics were found to be strongly and quantitatively related to edaphic conditions.

In the Brazilian Amazon, selective logging is second only to forest conversion in its extent. Conversion to pasture or agriculture tends to reduce soil nutrients and site productivity over time unless fertilizers are added. Logging removes nutrients in bole wood, enough that repeated logging could deplete essential nutrients over time. After a single logging event, nutrient losses are likely to be too small to observe in the large soil nutrient pools, but disturbances associated with logging also alter soil properties. Selective logging, particularly reduced-impact logging, results in consistent patterns of disturbance that may be associated with particular changes in soil properties. Soil bulk density, pH, carbon (C), nitrogen (N), phosphorus (P), calcium (Ca), magnesium (Mg), potassium (K), iron (Fe), aluminum (Al), delta(sup 3)C, delta(sup 15)N, and P fractionations were measured on the soils of four different types of loggingrelated disturbances: roads, decks, skids, and treefall gaps. Litter biomass and percent bare ground were also determined in these areas. To evaluate the importance of fresh foliage inputs from downed tree crowns in treefall gaps, foliar nutrients for mature forest trees were also determined and compared to that of fresh litterfall. The immediate impacts of logging on soil properties and how these might link to the longer-term estimated nutrient losses and the observed changes in soils were studied.

Aim The accurate mapping of forest carbon stocks is essential for understanding the global carbon cycle, for assessing emissions from deforestation, and for rational land-use planning. Remote sensing (RS) is currently the key tool for this purpose, but RS does not estimate vegetation biomass directly, and thus may miss significant spatial variations in forest structure. We test the stated accuracy of pantropical carbon maps using a large independent field dataset. Location Tropical forests of the Amazon basin. The permanent archive of the field plot data can be accessed at: http://dx.doi.org/10.5521/FORESTPLOTS.NET/2014_1 Methods Two recent pantropical RS maps of vegetation carbon are compared to a unique ground-plot dataset, involving tree measurements in 413 large inventory plots located in nine countries. The RS maps were compared directly to field plots, and kriging of the field data was used to allow area-based comparisons. Results The two RS carbon maps fail to capture the main gradient in Amazon forest carbon detected using 413 ground plots, from the densely wooded tall forests of the north-east, to the light-wooded, shorter forests of the south-west. The differences between plots and RS maps far exceed the uncertainties given in these studies, with whole regions over- or under-estimated by > 25%, whereas regional uncertainties for the maps were reported to be tree wood density and allometry to create maps suitable for carbon accounting. The use of single relationships between tree canopy height and above-ground biomass inevitably yields large, spatially correlated errors. This presents a significant challenge to both the forest conservation and remote sensing communities

A 3 cm diameter mass from the metacarpus of a Puerto Rican Amazon parrot was diagnosed as a granular cell tumour based on light microscopy. The cytoplasmic granules were periodic-acid Schiff positive and diastase resistant. Ultrastructural characteristics of the cells included convoluted nuclei and the presence of numerous cytoplasmic tertiary lysosomes. This is only the second granular cell tumour reported in a bird. We speculate that most granular cell tumours are derived from cells that are engaged in some type of cellular degradative process, creating a similar morphologic appearance, but lacking a uniform histogenesis.

Acyclic lipids were analysed for dissolved (<1·2 μm) and particulate (>1·2 μm) material from surface water of the Amazon continental shelf to correlate the direct inputs with diagenetic processes of the organic matter and to assess the differences in compound distribution patterns of the samples. The dissolved samples contained n -alkanes with an unusual even-to-odd carbon number predominance Amazon River. Furthermore, the Pr/Ph ratios calculated for the dissolved samples indicate that the organic matter in the surface of the highly turbid waters passed through an anaerobic stage. The differences in the acyclic hydrocarbon profiles of the dissolved and particulate phases show that organic inputs are preserved differently in smaller and larger particles.

size and diversity of the forest) are substantial, preliminary evaluation and past experience from temperate forest FACE experiments have supported the feasibility of an experiment comprising replicated 30-m diameter FACE plots in primary forest. The proposed site is the ZF2 research area 60 km north of Manaus and administered by Brazil's National Institute for Amazonia Research (INPA). The vegetation is representative of a dominant fraction of the forests occurring in the Amazon basin: old-growth closed-canopy terra firme (non-flooded) forest with trees 30-35 m in height on well drained clay soils. The major science questions guiding the experiment are closely informed by results of past FACE experiment and involve carbon metabolism, water use, nutrient cycling, interactions with environmental stressors, and the relationship between plant functional traits and community composition. FACE experiments can define ecological processes and mechanisms of responses for predictive models of ecosystem response, and models of CO2 response can define critical uncertainties and testable hypotheses for experiments; hence, the Amazon FACE experiment will feature a close integration of modeling and experimental approaches.

Ranger Rick's NatureScope is a creative education series dedicated to inspiring in children an understanding and appreciation of the natural world while developing the skills they will need to make responsible decisions about the environment. Contents are organized into the following sections: (1) "What Makes a Tree a Tree?," including information…

Lewis's own experiences living in Indonesia are fertile ground for telling "a ripping good story," one found in "The Flame Tree." He hopes people will enjoy the tale and appreciate the differences of an unfamiliar culture. The excerpt from "The Flame Tree" will reel readers in quickly.

Describes Trees for Mother Earth, a program in which secondary students raise funds to buy fruit trees to plant during visits to the Navajo Reservation. Benefits include developing feelings of self-worth among participants, promoting cultural exchange and understanding, and encouraging self-sufficiency among the Navajo. (LP)

Tree-like structures are fundamental in nature, and it is often useful to reconstruct the topology of a tree - what connects to what - from a two-dimensional image of it. However, the projected branches often cross in the image: the tree projects to a planar graph, and the inverse problem of reconstructing the topology of the tree from that of the graph is ill-posed. We regularize this problem with a generative, parametric tree-growth model. Under this model, reconstruction is possible in linear time if one knows the direction of each edge in the graph - which edge endpoint is closer to the root of the tree - but becomes NP-hard if the directions are not known. For the latter case, we present a heuristic search algorithm to estimate the most likely topology of a rooted, three-dimensional tree from a single two-dimensional image. Experimental results on retinal vessel, plant root, and synthetic tree data sets show that our methodology is both accurate and efficient. PMID:26353004

In the behavioral and social sciences, structural equation models (SEMs) have become widely accepted as a modeling tool for the relation between latent and observed variables. SEMs can be seen as a unification of several multivariate analysis techniques. SEM Trees combine the strengths of SEMs and the decision tree paradigm by building tree…

The circles and patterns in a tree's stem tell a story, but that story can be a mystery. Interpreting the story of tree rings provides a way to heighten the natural curiosity of students and help them gain insight into the interaction of elements in the environment. It also represents a wonderful opportunity to incorporate the nature of science.…

The major tree nuts include almonds, Brazil nuts, cashew nuts, hazelnuts, macadamia nuts, pecans, pine nuts, pistachio nuts, and walnuts. Tree nut oils are appreciated in food applications because of their flavors and are generally more expensive than other gourmet oils. Research during the last de...

A simulation model based on satellite observations of monthly vegetation greenness from the Moderate Resolution Imaging Spectroradiometer (MODIS) was used to estimate monthly carbon fluxes in terrestrial ecosystems of Brazilian Amazon and Cerrado regions over the period 2000-2002. The NASA-CASA (Carnegie Ames Stanford Approach) model estimates of annual forest production were used for the first time as the basis to generate a prediction for the standing pool of carbon in above-ground biomass (AGB; g C m-2) for forested areas of the Brazilian Amazon region. Plot-level measurements of the residence time of carbon in wood in Amazon forest from Malhi et al. (2006) were interpolated by inverse distance weighting algorithms and used with CASA to generate a new regional map of AGB. Data from the Brazilian PRODES (Estimativa do Desflorestamento da Amazônia) project were used to map deforested areas. Results show that net primary production (NPP) sinks for carbon varied between 4.25 Pg C yr-1 (1 Pg{=}1015 g) and 4.34 Pg C for the region and were highest across the eastern and northern Amazon areas, whereas deforestation sources of CO2 flux from decomposition of residual woody debris were higher and less seasonal in the central Amazon than in the eastern and southern areas. Increased woody debris from past deforestation events was predicted to alter the net ecosystem carbon balance of the Amazon region to generate annual CO2 source fluxes at least two times higher than previously predicted by CASA modeling studies. Variations in climate, land cover, and forest burning were predicted to release carbon at rates of 0.5 to 1 Pg C yr-1 from the Brazilian Amazon. When direct deforestation emissions of CO2 from forest burning of between 0.2 and 0.6 Pg C yr-1 in the Legal Amazon are overlooked in regional budgets, the year-to-year variations in this net biome flux may appear to be large, whereas our model results implies net biome fluxes had actually been relatively consistent from

A simulation model based on satellite observations of monthly vegetation greenness from the Moderate Resolution Imaging Spectroradiometer (MODIS) was used to estimate monthly carbon fluxes in terrestrial ecosystems of Brazilian Amazon and Cerrado regions over the period 2000-2002. The NASA-CASA (Carnegie Ames Stanford Approach) model estimates of annual forest production were used for the first time as the basis to generate a prediction for the standing pool of carbon in above-ground biomass (AGB; gC/sq m) for forested areas of the Brazilian Amazon region. Plot-level measurements of the residence time of carbon in wood in Amazon forest from Malhi et al. (2006) were interpolated by inverse distance weighting algorithms and used with CASA to generate a new regional map of AGB. Data from the Brazilian PRODES (Estimativa do Desflorestamento da Amazonia) project were used to map deforested areas. Results show that net primary production (NPP) sinks for carbon varied between 4.25 Pg C/yr (1 Pg=10(exp 15)g) and 4.34 Pg C for the region and were highest across the eastern and northern Amazon areas, whereas deforestation sources of CO2 flux from decomposition of residual woody debris were higher and less seasonal in the central Amazon than in the eastern and southern areas. Increased woody debris from past deforestation events was predicted to alter the net ecosystem carbon balance of the Amazon region to generate annual CO2 source fluxes at least two times higher than previously predicted by CASA modeling studies. Variations in climate, land cover, and forest burning were predicted to release carbon at rates of 0.5 to 1 Pg C/yr from the Brazilian Amazon. When direct deforestation emissions of CO2 from forest burning of between 0.2 and 0.6 Pg C/yr in the Legal Amazon are overlooked in regional budgets, the year-to-year variations in this net biome flux may appear to be large, whereas our model results implies net biome fluxes had actually been relatively consistent from

Dinitrogen (N2)-fixing trees in the Fabaceae fulfill a central role in tropical rainforests by supplying nitrogen from the atmosphere, yet whether they will support a forest CO2 sink in the future by alleviating nitrogen limitation may depend on whether and how they are controlled by local environmental conditions. Theory predicts that soil nutrients govern the function of N2 fixers, yet there have been no large-scale field-based tests of this idea. Moreover, recent findings indicate that N2-fixing species behave differently in biogeochemical cycles, suggesting that any environmental control may differ by species, and that the diversity of N2-fixing trees may be critical for ensuring tropical forest function. In this talk, we will use the RAINFOR dataset of 108 (~1.0 ha) lowland tropical rainforest plots from across the Amazon Basin to test whether the abundance and diversity of N2-fixing trees are controlled by soil nutrient availability (i.e., increasing with phosphorus and decreasing with nitrogen), or if fixer abundance and diversity simply follow the dynamics of all tree species. We also test an alternative - but not mutually exclusive - hypothesis that the governing factor for fixers is forest disturbance. Results show a surprising lack of control by local nutrients or disturbance on the abundance or diversity of N2 fixers. The dominant driver of fixer diversity was the total number of tree species, with fixers comprising 10% of all species in a forest plot (R2 = 0.75, linear regression). When considering the dominant taxa of N2 fixers (Inga, Swartzia, Tachigali) alone, environmental factors (nitrogen, phosphorus and disturbance) became important and clearly governed their abundance. These taxa, which contain >60% of N2-fixing trees in the data set, appear to have evolved to specialize in different local environmental conditions. The strong biogeochemistry-by-biodiversity interaction observed here points to a need to consider individual species or taxa of N2

We completed a meta-analysis of regional and global climate model simulations (n = 96) of the impact of Amazonian deforestation on Amazon basin rainfall. Across all simulations, mean (±1σ) change in annual mean Amazon basin rainfall was -12 ± 11%. Variability in simulated rainfall was not explained by differences in model resolution or surface parameters. Across all simulations we find a negative linear relationship between rainfall and deforestation extent, although individual studies often simulate a nonlinear response. Using the linear relationship, we estimate that deforestation in 2010 has reduced annual mean rainfall across the Amazon basin by 1.8 ± 0.3%, less than the interannual variability in observed rainfall. This may explain why a reduction in Amazon rainfall has not consistently been observed. We estimate that business-as-usual deforestation (based on deforestation rates prior to 2004) would lead to an 8.1 ± 1.4% reduction in annual mean Amazon basin rainfall by 2050, greater than natural variability.

The spatiotemporal variability of the greenhouse gas methane (CH4) in the atmosphere over the Amazon is studied using data from the space-borne measurements of the Atmospheric Infrared Sounder on board NASA's AQUA satellite for the period 2003-12. The results show a pronounced variability of this gas over the Amazon Basin lowlands region, where wetland areas occur. CH4 has a well-defined seasonal behavior, with a progressive increase of its concentration during the dry season, followed by a decrease during the wet season. Concerning this variability, the present study indicates the important role of ENSO in modulating the variability of CH4 emissions over the northern Amazon, where this association seems to be mostly linked to changes in flooded areas in response to ENSO-related precipitation changes. In this region, a CH4 decrease (increase) is due to the El Niño-related (La Niña-related) dryness (wetness). On the other hand, an increase (decrease) in the biomass burning over the southeastern Amazon during very dry (wet) years explains the increase (decrease) in CH4 emissions in this region. The present analysis identifies the two main areas of the Amazon, its northern and southeastern sectors, with remarkable interannual variations of CH4. This result might be useful for future monitoring of the variations in the concentration of CH4, the second-most important greenhouse gas, in this area.

The Amazon lowland rainforest flora is conventionally viewed as comprising lineages that evolved in biogeographic isolation after the split of west Gondwana (ca. 100 Myr ago). Recent molecular phylogenies, however, identify immigrant lineages that arrived in South America during its period of oceanic isolation (ca. 100-3 Myr ago). Long-distance sweepstakes dispersal across oceans played an important and possibly predominant role. Stepping-stone migration from Africa and North America through hypothesized Late Cretaceous and Tertiary island chains may have facilitated immigration. An analysis of inventory plot data suggests that immigrant lineages comprise ca. 20% of both the species and individuals of an Amazontree community in Ecuador. This is more than an order of magnitude higher than previous estimates. We also present data on the community-level similarity between South American and palaeotropical rainforests, and suggest that most taxonomic similarity derives from trans-oceanic dispersal, rather than a shared Gondwanan history. PMID:15519976

This paper is a preliminary inquiry by a non-mathematician into graphic methods of sequential planning and ways in which hierarchical analysis and tree structures can be helpful in developing interest in the use of mathematical modeling in the search for creative solutions to real-life problems. Highlights include a discussion of hierarchical…

Using a large, passive, clinic-based surveillance program in Iquitos, Peru, we characterized the prevalence of rickettsial infections among undifferentiated febrile cases and obtained evidence of pathogen transmission in potential domestic reservoir contacts and their ectoparasites. Blood specimens from humans and animals were assayed for spotted fever group rickettsiae (SFGR) and typhus group rickettsiae (TGR) by ELISA and/or PCR; ectoparasites were screened by PCR. Logistic regression was used to determine associations between patient history, demographic characteristics of participants and symptoms, clinical findings and outcome of rickettsial infection. Of the 2,054 enrolled participants, almost 2% showed evidence of seroconversion or a 4-fold rise in antibody titers specific for rickettsiae between acute and convalescent blood samples. Of 190 fleas (Ctenocephalides felis) and 60 ticks (Rhipicephalus sanguineus) tested, 185 (97.4%) and 3 (5%), respectively, were positive for Rickettsia spp. Candidatus Rickettsia asemboensis was identified in 100% and 33% of the fleas and ticks tested, respectively. Collectively, our serologic data indicates that human pathogenic SFGR are present in the Peruvian Amazon and pose a significant risk of infection to individuals exposed to wild, domestic and peri-domestic animals and their ectoparasites. PMID:27416029

As a chemically inert greenhouse gas in the troposphere with lifetimes up to 50 years but active in ozone destruction in the stratosphere, carbon tetrachloride (CCl4) plays a major role in the atmospheric chlorine budget and is widely considered strictly of anthropogenic origin deriving from numerous industrial processes and products. However, satellite remote sensing studies have shown higher concentrations at the Equator, and earlier work has suggested possible biogenic sources. Here we present highly vertically-resolved atmospheric gradients of CCl4 within and above a primary rainforest ecosystem from three towers in the Central Amazon. The observed buildup of CCl4 mixing ratios near the top of the main canopies provides new evidence for a potentially large biogenic source from the Basin. By demonstrating the need to represent tropical forests as biogenic sources of CCl4, our study may help narrow the gap between remote sensing observations of CCl4 and emission, chemistry, and transport models and therefore lead to improved predictions of its role in atmospheric chemistry and climate.

Using a large, passive, clinic-based surveillance program in Iquitos, Peru, we characterized the prevalence of rickettsial infections among undifferentiated febrile cases and obtained evidence of pathogen transmission in potential domestic reservoir contacts and their ectoparasites. Blood specimens from humans and animals were assayed for spotted fever group rickettsiae (SFGR) and typhus group rickettsiae (TGR) by ELISA and/or PCR; ectoparasites were screened by PCR. Logistic regression was used to determine associations between patient history, demographic characteristics of participants and symptoms, clinical findings and outcome of rickettsial infection. Of the 2,054 enrolled participants, almost 2% showed evidence of seroconversion or a 4-fold rise in antibody titers specific for rickettsiae between acute and convalescent blood samples. Of 190 fleas (Ctenocephalides felis) and 60 ticks (Rhipicephalus sanguineus) tested, 185 (97.4%) and 3 (5%), respectively, were positive for Rickettsia spp. Candidatus Rickettsia asemboensis was identified in 100% and 33% of the fleas and ticks tested, respectively. Collectively, our serologic data indicates that human pathogenic SFGR are present in the Peruvian Amazon and pose a significant risk of infection to individuals exposed to wild, domestic and peri-domestic animals and their ectoparasites. PMID:27416029

Changes in extreme weather and climate events have significant impacts and are among the most serious challenges to society in coping with a changing climate (CCSP, 2008). Indeed, according to IPCC AR4, confidence has increased that some extremes will become more frequent, more widespread and/or more intense during the 21st century . Until recently, there had been little published work on rainfall extremes in South America, and emphasis has been given to the La Plata Basin, where data coverage is much better. In this study, we use the indices of extremes derived by the WMO and used for the IPCC AR4 applied to 100 stations in Amazon Basin for the period from 1971 to 2005, with focus on rainfall extremes. The quality control involved carefully evaluating numerous detailed graphs of daily data to detect evidence of possible quality issues with the data as well as statistically identifying outliers. Each outlier or potential data problem was manually validated using metadata information of our climate data.

We present an assessment of methane (CH4) atmospheric concentrations over the Amazon Basin for 2010 and 2011 using a 3-D atmospheric chemical transport model, two wetland emission models, and new observations made during biweekly flights made over four locations within the basin. We attempt to constrain basin-wide CH4 emissions using the observations, and since 2010 was an unusually dry year, we assess the effect of this drought on Amazonian methane emissions. We find that South American emissions contribute up to 150 ppb to concentrations at the sites, mainly originating from within the basin. Our atmospheric model simulations agree reasonably well with measurements at three of the locations (0.28 ≤ r2 ≤ 0.63, mean bias ≤ 9.5 ppb). Attempts to improve the simulated background CH4 concentration through analysis of simulated and observed sulphur hexafluoride concentrations do not improve the model performance, however. Through minimisation of seasonal biases between the simulated and observed atmospheric concentrations, we scale our prior emission inventories to derive total basin-wide methane emissions of 36.5-41.1 Tg(CH4)/yr in 2010 and 31.6-38.8 Tg(CH4)/yr in 2011. These totals suggest that the Amazon contributes significantly (up to 7%) to global CH4 emissions. Our analysis indicates that factors other than precipitation, such as temperature variations or tree mortality, may have affected microbial emission rates. However, given the uncertainty of our emission estimates, we cannot say definitively whether the noncombustion emissions from the region were different in 2010 and 2011, despite contrasting meteorological conditions between the two years.

In the Amazon forest, transpiration and photosynthesis rates are often higher during the dry season than during the wet season. However, multiyear or particularly strong droughts affect ecosystem productivity and tree mortality, as indicated by recent droughts during 2005 and 2010. A majority of climate models predict decreased rainfall in tropical South America throughout the 21st century, especially during the dry season. Using observed meteorology from two rainfall exclusion experiments in the Amazon (Tapajós and Caxiuanã), we examine forest response to drought in an ecosystem model (SiB3 - the Simple Biosphere model). The exclusion experiments prevented ~50% of precipitation from reaching the forest floor. The observed forest was more resilient at Tapajós, but the simulations showed stronger resiliency at Caxiuanã. To explain the model-observation difference we focus on annual precipitation and seasonal cycle and depth to water table, which could influence deep root development. We run SiB3 with variable rooting depth, with improved simulations of the drought response in both cases (the default root depth in SiB3 is 10 m). These results suggest that a "one size fits all" approach to modeling tropical forest drought response is not adequate. We therefore define a "stress resilience index", which can be used to create a map of tropical forest root depth. The index is based on the results of SiB3 at the exclusion sites, precipitation climatology, and percent forest cover in a grid cell. Using spatially variable root depth in a global version of SiB3 results in an improved simulation of ecosystem drought response.

Drought exerts a strong influence on tropical forest metabolism, carbon stocks, and ultimately the flux of carbon to the atmosphere. Satellite-based studies have suggested that Amazon forests green up during droughts because of increased sunlight, whereas field studies have reported increased tree mortality during severe droughts. In an effort to reconcile these apparently conflicting findings, we conducted an analysis of climate data, field measurements, and improved satellite-based measures of forest photosynthetic activity. Wet-season precipitation and plant-available water (PAW) decreased over the Amazon Basin from 1996−2005, and photosynthetically active radiation (PAR) and air dryness (expressed as vapor pressure deficit, VPD) increased from 2002–2005. Using improved enhanced vegetation index (EVI) measurements (2000–2008), we show that gross primary productivity (expressed as EVI) declined with VPD and PAW in regions of sparse canopy cover across a wide range of environments for each year of the study. In densely forested areas, no climatic variable adequately explained the Basin-wide interannual variability of EVI. Based on a site-specific study, we show that monthly EVI was relatively insensitive to leaf area index (LAI) but correlated positively with leaf flushing and PAR measured in the field. These findings suggest that production of new leaves, even when unaccompanied by associated changes in LAI, could play an important role in Basin-wide interannual EVI variability. Because EVI variability was greatest in regions of lower PAW, we hypothesize that drought could increase EVI by synchronizing leaf flushing via its effects on leaf bud development. PMID:20679201

Seed dispersal by wind is a critical yet poorly understood process in tropical forest trees. How tree size and fecundity affect this process at the population level remains largely unknown because of insufficient replication across adults. We measured seed dispersal by the endangered neotropical timber species big-leaf mahogany (Swietenia macrophylla King, Meliaceae) in the Brazilian Amazon at 25 relatively isolated trees using multiple 1-m wide belt transects extended 100 m downwind. Tree diameter and fecundity correlated positively with increased seed shadow extent; but in combination large, high fecundity trees contributed disproportionately to longer-distance dispersal events (>60 m). Among three empirical models fitted to seed density vs. distance in one dimension, the Student-t (2Dt) generally fit best (compared to the negative exponential and inverse power). When seedfall downwind was modelled in two dimensions using a normalised sample, it peaked furthest downwind (c. 25 m) for large, high-fecundity trees; with the inverse Gaussian and Weibull functions providing comparable fits that were slightly better than the lognormal. Although most seeds fell within 30 m of parent trees, relatively few juveniles were found within this distance, resulting in juvenile-to-seed ratios peaking at c. 35–45 m. Using the 2Dt model fits to predict seed densities downwind, coupled with known fecundity data for 2000–2009, we evaluated potential Swietenia regeneration near adults (≤30 m dispersal) and beyond 30 m. Mean seed arrival into canopy gaps >30 m downwind was more than 3× greater for large, high fecundity trees than small, high-fecundity trees. Tree seed production did not necessarily scale up proportionately with diameter, and was not consistent across years, and this resulting intraspecific variation can have important consequences for local patterns of dispersal in forests. Our results have important implications for management and conservation of big

Seed dispersal by wind is a critical yet poorly understood process in tropical forest trees. How tree size and fecundity affect this process at the population level remains largely unknown because of insufficient replication across adults. We measured seed dispersal by the endangered neotropical timber species big-leaf mahogany (Swietenia macrophylla King, Meliaceae) in the Brazilian Amazon at 25 relatively isolated trees using multiple 1-m wide belt transects extended 100 m downwind. Tree diameter and fecundity correlated positively with increased seed shadow extent; but in combination large, high fecundity trees contributed disproportionately to longer-distance dispersal events (>60 m). Among three empirical models fitted to seed density vs. distance in one dimension, the Student-t (2Dt) generally fit best (compared to the negative exponential and inverse power). When seedfall downwind was modelled in two dimensions using a normalised sample, it peaked furthest downwind (c. 25 m) for large, high-fecundity trees; with the inverse Gaussian and Weibull functions providing comparable fits that were slightly better than the lognormal. Although most seeds fell within 30 m of parent trees, relatively few juveniles were found within this distance, resulting in juvenile-to-seed ratios peaking at c. 35-45 m. Using the 2Dt model fits to predict seed densities downwind, coupled with known fecundity data for 2000-2009, we evaluated potential Swietenia regeneration near adults (≤30 m dispersal) and beyond 30 m. Mean seed arrival into canopy gaps >30 m downwind was more than 3× greater for large, high fecundity trees than small, high-fecundity trees. Tree seed production did not necessarily scale up proportionately with diameter, and was not consistent across years, and this resulting intraspecific variation can have important consequences for local patterns of dispersal in forests. Our results have important implications for management and conservation of big-leaf mahogany

Wetlands comprise 14% of the Amazon basin, and are a major component of the hydrological and biogeochemical cycles. Most of these areas correspond to floodplain ecosystems along the Amazon River and its major tributaries, hosting unique vegetation types that are strongly controlled by annual hydrological fluctuations. The combination of strong environmental filtering and active fluvial dynamics results in a highly heterogeneous landscape, and in physiological linkages between climate variability and ecosystem processes. We will show several years of results obtained within the framework of the LBA program, discussing the interplay between hydroclimatic variability, landscape dynamics, ecosystem functioning and carbon biogeochemistry in the Amazon floodplains. Using optical and microwave remote sensing, we assessed the distribution of major vegetation types and flooding regimes at several locations across the floodplain. Strong variability in vegetation distribution can be observed, with high and low várzea forests ranging from 30% and 34%, respectively, at the upper Solimões River, to 6% and 25% at the lower Solimões, while non-forested habitats and lakes increase from a percent cover of 8% and 10% to 28% and 27%, respectively. Strong variability in local flood regimes was also determined for each vegetation type, revealing a gradient of habitats within each floodplain. As tree growth, diversity and phenology are affected by flood duration, we expect local conditions to strongly impact carbon stocks and cycling at the landscape scale. Fluvial processes also disturb forest patches, ensuring a mixture of age distributions in the landscape, with varying species composition, carbon stocks, and carbon uptake rates. Herbaceous vegetation growth responds very rapidly to changes in hydrological conditions, and modeling based on microwave imagery and in situ observations showed expected changes of up to 50% in annual net primary production between regular and extreme

mixed seasonal response to light and moisture controls was observed, partly due to mixed tree functional types. This work offers an improved understanding of forest vegetation dynamics and phenology along the forest-ecotone-savanna, important information for predicting climate change and anthropogenic impacts at the Amazon basin.

Tower-mounted RGB cameras can contribute data to the debate on seasonality of photosynthesis in Amazon upland forests and to improved modelling of forest response to climate change. In late 2010 we began monitoring upper crown surfaces of ~65 living trees or vines from a 54m tall eddy-flux tower on a well-drained clay-soil plateau. This Central Amazon site (60.2091 W, 2.6092 S) is in a large forest reserve. We deployed a Stardot Netcam XL RGB camera with a 1024 x 768 resolution CMOS sensor, 66o HFOV lens, fixed oblique south view, fixed iris, fixed white balance and auto-exposure. Images were logged every 15 seconds to a passively cooled FitPC2i with heat-tolerant SSD drive. Camera and PC automatically rebooted after power outages. Here we report results for two full years, from 1 Dec 2011 through 30 Nov 2013. Images in six day intervals were selected near local noon for homogeneous diffuse lighting under cloudy sky and for a standard reflected radiance (± 10%). Crowns showing two easily recognized phenophases were tallied: (1) massive flushing of new light-green leaves and (2) complete or nearly complete leaf loss. On average, 60% of live crowns flushed a massive amount of new leaves each year. Each crown flush was completed within 30 days. During the five driest months (Jun-Oct), 44% of all live crowns, on average, exhibited such massive leaf flush. In the five wettest months (Dec-Apr) only 11% of live crowns mass-flushed new leaves. In each year 23% of all live crowns became deciduous, usually a brief (1-2 week) preamble to flushing. Additional crowns lost old dark-green leaves partially and more gradually, becoming semi-deciduous prior to flushing. From these two years of camera data we infer that highly efficient leaves of 2-6 months age (high maximum carboxylation rate) are most abundant from the late dry season (October) through the mid wet season (March). This coincides with peak annual photosynthesis (Gross Ecosystem Productivity) reported for this same

Ozone data obtained over the forest canopy of the Amazon Basin during July and August 1985 in the course of NASA's Amazon Boundary Layer Experiment 2A are discussed, and ozone profiles obtained during flights from Belem to Tabatinga, Brazil, are analyzed to determine any cross-basin effects. The analyses of ozone data indicate that the mixed layer of the Amazon Basin, for the conditions of undisturbed meteorology and in the absence of biomass burning, is a significant sink for tropospheric ozone. As the coast is approached, marine influences are noted at about 300 km inland, and a transition from a forest-controlled mixed layer to a marine-controlled mixed layer is noted.

The enhanced vegetation index (EVI) obtained from satellite imagery has often been used as a proxy of vegetation functioning and productivity in the Amazon rainforest. However, recent studies indicate that EVI patterns are strongly affected by satellite data artifacts. Hence, it is unclear if EVI is sensitive to subtle seasonal variations in evergreen Amazon forest productivity. This study analyzes 12 years of Moderate Resolution Imaging Spectroradiometer (MODIS) EVI in order to evaluate its response to factors driving productivity in the Amazon. We show that, after removing cloud and aerosol contamination, and correcting bidirectional reflectance distribution function effects, radiation and rainfall extremes show no influence on EVI anomalies. However, EVI seasonal patterns are still evident after accounting for Sun-sensor geometry effects. This remaining pattern cannot be explained by solar radiation or rainfall, but it is significantly correlated to gross primary production (GPP). Nevertheless, we argue that the causality between GPP and EVI should be interpreted with caution.

Genetic data is often used to infer evolutionary relationships among a collection of viruses, bacteria, animal or plant species, or other operational taxonomic units (OTU). A phylogenetic tree depicts such relationships and provides a visual representation of the estimated branching order of the OTUs. Tree estimation is unique for several reasons, including: the types of data used to represent each OTU; the use ofprobabilistic nucleotide substitution models; the inference goals involving both tree topology and branch length, and the huge number of possible trees for a given sample of a very modest number of OTUs, which implies that fmding the best tree(s) to describe the genetic data for each OTU is computationally demanding. Bioinformatics is too large a field to review here. We focus on that aspect of bioinformatics that includes study of similarities in genetic data from multiple OTUs. Although research questions are diverse, a common underlying challenge is to estimate the evolutionary history of the OTUs. Therefore, this paper reviews the role of phylogenetic tree estimation in bioinformatics, available methods and software, and identifies areas for additional research and development.

Lazy learning algorithms, exemplified by nearest-neighbor algorithms, do not induce a concise hypothesis from a given training set; the inductive process is delayed until a test instance is given. Algorithms for constructing decision trees, such as C4.5, ID3, and CART create a single {open_quotes}best{close_quotes} decision tree during the training phase, and this tree is then used to classify test instances. The tests at the nodes of the constructed tree are good on average, but there may be better tests for classifying a specific instance. We propose a lazy decision tree algorithm-LazyDT-that conceptually constructs the {open_quotes}best{close_quote} decision tree for each test instance. In practice, only a path needs to be constructed, and a caching scheme makes the algorithm fast. The algorithm is robust with respect to missing values without resorting to the complicated methods usually seen in induction of decision trees. Experiments on real and artificial problems are presented.

Amazon rainfall is subject to year-to-year fluctuation resulting in drought and flood in various intensities. A major climatic driver of the interannual variation of the Amazon rainfall is El Niño/Southern Oscillation. Also, the Sea Surface Temperature over the Atlantic Ocean is identified as an important climatic driver on the Amazon water cycle. Previously, observational datasets were used to support the Atlantic influence on Amazon rainfall. Furthermore, it is found that multiple global climate models do reproduce the Atlantic-Amazon link robustly. However, there exist differences in rainfall response, which primarily depends on the climatological rainfall amount.

Recent climate modeling suggests that the Amazon rainforest could exhibit considerable dieback under future climate change, a prediction that has raised considerable interest as well as controversy. To determine the likelihood and causes of such changes, we analyzed the output of 15 models from the Intergovernmental Panel on Climate Change Fourth Assessment Report (IPCC/AR4) and a dynamic vegetation model VEGAS driven by these climate output. Our results suggest that the core of the Amazon rainforest should remain largely stable. However, the periphery, notably the southern edge, is in danger of drying out, driven by two main processes. First, a decline in precipitation of 24% in the southern Amazon lengthens the dry season and reduces soil moisture, despite of an increase in precipitation during the wet season, due to the nonlinear response in hydrology and ecosystem dynamics. Two dynamical mechanisms may explain the lower dry season precipitation: (1) a stronger north-south tropical Atlantic sea surface temperature gradient; (2) a general subtropical drying under global warming when the dry season southern Amazon is under the control of the subtropical high pressure. Secondly, evaporation will increase due to the general warming, thus also reducing soil moisture. As a consequence, the median of the models projects a reduction of vegetation by 20%, and enhanced fire carbon flux by 10-15% in the southern Amazon, central Brazil, and parts of the Andean Mountains. Because the southern Amazon is also under intense human influence, the double pressure of deforestation and climate change may subject the region to dramatic changes in the 21st century.

Algorithms for learning classification trees have had successes in artificial intelligence and statistics over many years. How a tree learning algorithm can be derived from Bayesian decision theory is outlined. This introduces Bayesian techniques for splitting, smoothing, and tree averaging. The splitting rule turns out to be similar to Quinlan's information gain splitting rule, while smoothing and averaging replace pruning. Comparative experiments with reimplementations of a minimum encoding approach, Quinlan's C4 and Breiman et al. Cart show the full Bayesian algorithm is consistently as good, or more accurate than these other approaches though at a computational price.

It is described how Minimum Description Length (MDL) can be applied to the problem of DNA and protein evolutionary tree reconstruction. If there is a set of mutations that transform a common ancestor into a set of the known sequences, and this description is shorter than the information to encode the known sequences directly, then strong evidence for an evolutionary relationship has been found. A heuristic algorithm is described that searches for the simplest tree (smallest MDL) that finds close to optimal trees on the test data. Various ways of extending the MDL theory to more complex evolutionary relationships are discussed.

The gravity apple tree is a genealogical tree of the gravitation theories developed during the past century. The graphic representation is full of information such as guides in heuristic principles, names of main proponents, dates and references for original articles (See under Supplementary Data for the graphic representation). This visual presentation and its particular classification allows a quick synthetic view for a plurality of theories, many of them well validated in the Solar System domain. Its diachronic structure organizes information in a shape of a tree following similarities through a formal concept analysis. It can be used for educational purposes or as a tool for philosophical discussion.

The Amazon pellona is one of the few species of Pristigasteridae with recognized commercial value in the Amazon. We isolated 24 and characterized 8 microsatellite loci for this species. The number of alleles ranges from 2-8 per locus. Observed heterozygosities ranged from 0.052-0.823, while expected heterozygosities from 0.052-0.836. These 8 microsatellites are potentially valuable tools for characterizing the levels and distribution of genetic diversity, population structure, and gene flow. They may also be important parameters for the genetic conservation of this species, as well as for its sister taxon Pellona flavipinnis. PMID:26125704

In this document we compare the performance of the Amazon Web Services (AWS), also known as Amazon Cloud, with the CLARREO (Climate Absolute Radiance and Refractivity Observatory) cluster and assess its suitability for computational needs of the CLARREO mission. A benchmark executable to process one month and one year of PARASOL (Polarization and Anistropy of Reflectances for Atmospheric Sciences coupled with Observations from a Lidar) data was used. With the optimal AWS configuration, adequate data-processing times, comparable to the CLARREO cluster, were found. The assessment of alternatives to the CLARREO cluster continues and several options, such as a NASA-based cluster, are being considered.

Osteoma is an uncommon bone formation documented in avian species and other animals. A blue-fronted Amazon parrot (Amazona aestiva) with clinical respiratory symptoms was examined because of a hard mass present on the left nostril. Radiographs suggested a bone tumor, and the mass was surgically excised. Histopathologic examination revealed features of an osteoma. To our knowledge, this is the first description of an osteoma in a blue-fronted Amazon parrot. Osteoma should be considered as a differential diagnosis in birds with respiratory distress and swelling of the nostril. PMID:24344513

The Yellow-shouldered Amazon (Amazona barbadensis) is the sole parrot of the genus Amazona that inhabits only dry forests. Its population has been dropping; therefore it has been the topic of many studies and conservation efforts. However, the phylogenetic relationship of this species to potential relatives classified within the Yellow-Headed Amazon (YHA) complex are still not clear. Therefore, we used more extensive data sets, including the newly sequenced mitochondrial genome of A. barbadensis, to conduct phylogenetic analyses. Various combinations of genes and many phylogenetic approaches showed that A. barbadensis clustered significantly with A. ochrocephala ochrocephala from Colombia and Venezuela, which created the Northern South American (NSA) lineage, clearly separated from two other lineages within the YHA complex, the Central (CA) and South American (SA). Tree topology tests and exclusion of rapidly evolving sites provided support for a NSA+SA grouping. We propose an evolutionary scenario for the YHA complex and its colonization of the American mainland. The NSA lineage likely represents the most ancestral lineage, which derived from Lesser Antillean Amazons and colonized the northern coast of Venezuela about a million years ago. Then, Central America was colonized through the Isthmus of Panama, which led to the emergence of the CA lineage. The southward expansion to South America and the origin of the SA lineage happened almost simultaneously. However, more intensive or prolonged gene flow or migrations have led to much weaker geographic differentiation of genetic markers in the SA than in the CA lineage. PMID:24823658

A carbon sequestration strategy is proposed in which forests are sustainably managed to optimal carbon productivity, and a fraction of the wood is selectively harvested and stored to prevent decomposition under anaerobic, dry or cold conditions. Because a large flux of CO2 is constantly assimilated into the world's forests via photosynthesis, cutting off its return pathway to the atmosphere forms an effective carbon sink. The live trees serve as a 'carbon scrubber' or 'carbon remover' that provides continuous sequestration (negative emissions). The stored wood is a semi-permanent carbon sink, but also serves as a 'biomass/bioenergy reserve' that could be utilized in the future. We discuss the particular relevance of this strategy to the Amazon which is under the double threat of climate change and deforestation. As an alternative to REDD, we propose mixed-use of peripheral Amazon basin while keeping the core of the Amazon intact. We argue that this may be a more practical solution in light of the likely climate change impact and human activities.

The Yellow-shouldered Amazon (Amazona barbadensis) is the sole parrot of the genus Amazona that inhabits only dry forests. Its population has been dropping; therefore it has been the topic of many studies and conservation efforts. However, the phylogenetic relationship of this species to potential relatives classified within the Yellow-Headed Amazon (YHA) complex are still not clear. Therefore, we used more extensive data sets, including the newly sequenced mitochondrial genome of A. barbadensis, to conduct phylogenetic analyses. Various combinations of genes and many phylogenetic approaches showed that A. barbadensis clustered significantly with A. ochrocephala ochrocephala from Colombia and Venezuela, which created the Northern South American (NSA) lineage, clearly separated from two other lineages within the YHA complex, the Central (CA) and South American (SA). Tree topology tests and exclusion of rapidly evolving sites provided support for a NSA+SA grouping. We propose an evolutionary scenario for the YHA complex and its colonization of the American mainland. The NSA lineage likely represents the most ancestral lineage, which derived from Lesser Antillean Amazons and colonized the northern coast of Venezuela about a million years ago. Then, Central America was colonized through the Isthmus of Panama, which led to the emergence of the CA lineage. The southward expansion to South America and the origin of the SA lineage happened almost simultaneously. However, more intensive or prolonged gene flow or migrations have led to much weaker geographic differentiation of genetic markers in the SA than in the CA lineage. PMID:24823658

Floodplain inundation and vegetation along the Negro and Amazon rivers near Manaus, Brazil were accurately delineated using multi-frequency, polarimetric synthetic aperture radar (SAR) data from the April and October 1994 SIR-C missions. A decision-tree model was used to formulate rules for a supervised classification into five categories: water, clearing (pasture), aquatic macrophyte (floating meadow), nonflooded forest, and flooded forest. Classified images were produced and tested within three days of SIR-C data acquisition. Both C-band (5.7 cm) and L-band (24 cm) wavelengths were necessary to distinguish the cover types. HH polarization was most useful for distinguishing flooded from nonflooded vegetation (C-HH for macrophyte versus pasture, and L-HH for flooded versus nonflooded forest), and cross-polarized L-band data provided the best separation between woody and nonwoody vegetation. Between the April and October missions, the Amazon River level fell about 3.6 m and the portion of the study area covered by flooded forest decreased from 23% to 12%. This study demonstrates the ability of multifrequency SAR to quantify in near realtime the extent of inundation on forested floodplains, and its potential application for timely monitoring of flood events.

This paper addresses the potential and limitations of radar altimetry inversion techniques for quantitative forest parameter estimation in tropical forests using Cryosat2 SIRAL waveform data of the synthetic aperture/interferometric (SARin) mode for very dense and tall forest canopies in Brazil, Amazon. The 20Hz waveform data of SARin mode of Cycle 5 subcycle 3 (August 20th, 2012) and subcycles 4 (September 18th, 2012) were analyzed and used to retrieve canopy height under Cryosat2 ground track. Waveform analysis shows that the power waveform exhibits interesting features in detecting forest vertical structures in different area. With the help of coherence waveform, the canopy height is derived by determining the key points of forest top and ground returns. Because of lack of field tree height measurement in 2012 at Amazon, we validated the results using the global forest height product based on ICEsat1 GLAS data in 2005 and the field measurements at Tapajos National Forest, Brazil in 1999. Results indicated that the mean value of the canopy height from Cryosat2/SIRAL is between that of the Lidar data and field measurements. The height estimated using Cryosat2/ SIRAL data is much closer to the Lorey’s height than the mean and maximum height. Radar altimeter has shown promise to map structure in high density regions of the tropics.

In response to the massive volume of water along the Amazon River, the Amazon tributaries have their water backed up by 100s of kilometers upstream their mouth. This backwater effect is part of the complex hydrodynamics of Amazonian surface waters, which in turn drives the variation in concentrations of organic matter and nutrients, and also regulates planktonic communities such as viruses and bacteria. Viruses and bacteria are commonly tightly coupled to each other, and their ecological role in aquatic food webs has been increasingly recognized. Here, we surveyed viral and bacterial abundances (BAs) in 26 floodplain lakes along the Trombetas River, the largest clear-water tributary of the Amazon River’s north margin. We correlated viral and BAs with temperature, pH, dissolved inorganic carbon, dissolved organic carbon (DOC), phosphorus, nitrogen, turbidity, water transparency, partial pressure of carbon dioxide (pCO2), phytoplankton abundance, and distance from the lake mouth until the confluence of the Trombetas with the Amazon River. We hypothesized that both bacterial and viral abundances (VAs) would change along a latitudinal gradient, as the backwater effect becomes more intense with increased proximity to the Amazon River; different flood duration and intensity among lakes and waters with contrasting sources would cause spatial variation. Our measurements were performed during the low water period, when floodplain lakes are in their most lake-like conditions. Viral and BAs, DOC, pCO2, and water transparency increased as distance to the Amazon River increased. Most viruses were bacteriophages, as viruses were strongly linked to bacteria, but not to phytoplankton. We suggest that BAs increase in response to DOC quantity and possibly quality, consequently leading to increased VAs. Our results highlight that hydrodynamics plays a key role in the regulation of planktonic viral and bacterial communities in Amazonian floodplain lakes. PMID:25788895

In response to the massive volume of water along the Amazon River, the Amazon tributaries have their water backed up by 100s of kilometers upstream their mouth. This backwater effect is part of the complex hydrodynamics of Amazonian surface waters, which in turn drives the variation in concentrations of organic matter and nutrients, and also regulates planktonic communities such as viruses and bacteria. Viruses and bacteria are commonly tightly coupled to each other, and their ecological role in aquatic food webs has been increasingly recognized. Here, we surveyed viral and bacterial abundances (BAs) in 26 floodplain lakes along the Trombetas River, the largest clear-water tributary of the Amazon River's north margin. We correlated viral and BAs with temperature, pH, dissolved inorganic carbon, dissolved organic carbon (DOC), phosphorus, nitrogen, turbidity, water transparency, partial pressure of carbon dioxide (pCO2), phytoplankton abundance, and distance from the lake mouth until the confluence of the Trombetas with the Amazon River. We hypothesized that both bacterial and viral abundances (VAs) would change along a latitudinal gradient, as the backwater effect becomes more intense with increased proximity to the Amazon River; different flood duration and intensity among lakes and waters with contrasting sources would cause spatial variation. Our measurements were performed during the low water period, when floodplain lakes are in their most lake-like conditions. Viral and BAs, DOC, pCO2, and water transparency increased as distance to the Amazon River increased. Most viruses were bacteriophages, as viruses were strongly linked to bacteria, but not to phytoplankton. We suggest that BAs increase in response to DOC quantity and possibly quality, consequently leading to increased VAs. Our results highlight that hydrodynamics plays a key role in the regulation of planktonic viral and bacterial communities in Amazonian floodplain lakes. PMID:25788895

The current environmental crisis permeates the discourse and concerns of people all over the world. Consideration of diverse environmental ethics showing the alternative ways in which people conceptualize and relate to nature and natural resources are critical for bringing about more sustainable human behaviors. After a brief review of Western historical notions of nature, this work explores the ecogony, or causal reasons, that trigger the behavior of the Jotï, an Amerindian people of the Venezuelan Amazon, with other entities and the forest that they inhabit. The analysis presented synthesizes 15 years of transdisciplinary ethno-ecological research comprising quantitative and qualitative methods (collection of herbarium voucher specimens, floristic inventories in forest plots, structured interviews focused on plot vegetation, semi-structured interviews of life-histories, participant observation, time allocation studies, food resource accounting, focal person following observations, garden crop inventories and censuses, mapping of wild resource harvest locations, among others). Jotï pragmatic and ideological tenets generate a distinctive environmental ethics based on ecogonic nodes. Notions of interdependence, humanity and person are articulated on a daily basis through several dynamics: (1) hyper-awareness of all living things’ dependence on each other and other elements of the biophysical environment at macroscales and microscales, (2) the construction of human spiritual, conscious, physical and agentive constituents from a variety of diverse botanical and zoological species and mineral components of their homeland, and (3) an understanding of the aggregate surroundings, including a significant portion of the biotic and abiotic components, as potential subjects with awareness, creativity and moral stances. This condition of interdependence confers rights and duties on all the parts. Jotï horizontal communications with and among life-forms sustain their

Anaerobic methane oxidation on the Amazon shelf is strongly controlled by dynamic physical sedimentation processes. Rapidly accumulating, physically reworked deltaic sediments characteristic of much of the shelf typically support what appear to be low rates of steady state anaerobic methane oxidation at depths of 5-8 m below the sediment-water interface. Methane oxidation in these cases is responsible for < {approximately}10% of the {Sigma}CO{sub 2} inventory in the oxidation zone and is limited largely by the steady-state diffusive flux of methane into the overlying sulfate reduction zone. In contrast, a large area of the shelf has been extensively eroded, reexposing once deeply buried (>10 m) methane-charged sediment directly to seawater. In this nonsteady-state situation, methane is a major source of recently produced {Sigma}CO{sub 2} and an important reductant for sulfate. These observations suggest that authigenic sedimentary carbonates derived from anaerobic methane oxidation may sometimes reflect physically enhanced nonsteady-state exposure of methane to sulfate in otherwise biogeochemically unreactive deposits. The concentration profiles of CH{sub 4}, SO{sub 4}{sup =}, and {Sigma}CO{sub 2} in the eroded deposit were reproduced by a coupled reaction-transport model. This area of the shelf was reexposed to seawater approximately 5-10 years ago based on the model results and the assumption that the erosion of the deposit occurred as a single event that has now ceased. The necessary second order rate constant for anaerobic methane oxidation was {le}0.1 mM{sup -1} d{sup -1}.

In this overview to biomedical computing in the cloud, we discussed two primary ways to use the cloud (a single instance or cluster), provided a detailed example using NGS mapping, and highlighted the associated costs. While many users new to the cloud may assume that entry is as straightforward as uploading an application and selecting an instance type and storage options, we illustrated that there is substantial up-front effort required before an application can make full use of the cloud's vast resources. Our intention was to provide a set of best practices and to illustrate how those apply to a typical application pipeline for biomedical informatics, but also general enough for extrapolation to other types of computational problems. Our mapping example was intended to illustrate how to develop a scalable project and not to compare and contrast alignment algorithms for read mapping and genome assembly. Indeed, with a newer aligner such as Bowtie, it is possible to map the entire African genome using one m2.2xlarge instance in 48 hours for a total cost of approximately $48 in computation time. In our example, we were not concerned with data transfer rates, which are heavily influenced by the amount of available bandwidth, connection latency, and network availability. When transferring large amounts of data to the cloud, bandwidth limitations can be a major bottleneck, and in some cases it is more efficient to simply mail a storage device containing the data to AWS (http://aws.amazon.com/importexport/). More information about cloud computing, detailed cost analysis, and security can be found in references. PMID:21901085

Determining the drivers of tree mortality in Amazonia is a complex task, yet essential to reliable prediction of carbon storage in a warmer climate. Past studies have shown an east-west gradient of forest disturbance and rainfall amount across Amazonia. This study uses remote sensing and dynamic vegetation modeling to take a deeper look at drivers of tree mortality and community composition shifts associated with varying mortality rates. Our analysis, using 20 years of Landsat 5 images, showed that ever-wet Amazonia (located in north-west Amazonia, i.e. NWA) was more susceptible to windthrows than the Central Amazon (i.e. CA), which has a a well-defined dry season. The higher frequency of windthrows in NWA forest correlates with higher frequency and intensity of deep convection events in this region, observed using Tropical Rainfall Measuring Mission (TRMM) data. While a combination of factors including: soil characteristics (and by proxy rooting depth) and community composition exacerbate the regional gradient of disturbance, wind was the mechanistic agent of disturbance. Using an individual-based gap model for tropical forests populated with the most representative NWA tree species and increased mortality rates, we found a decrease of biomass in this region and a slight increase in NPP compared to a control simulation, a pattern that is similar to observations. The model predicted which species had the largest response in basal area change due to elevated disturbance, but there was a non-significant shift in community composition in the NWA forests. However, analysis found strong differences in community composition between the modeled NWA and CA regions, consistent with observed results. When CA forests were subject to higher mortality rate similar to the current NWA region, dissimilarity in community composition continued to persist. In addition the model identified species-specific maximum tree height and maximum diameter as the most influential predictors of

We investigate relations between loop and tree amplitudes in quantum field theory that involve putting on-shell some loop propagators. This generalizes the so-called Feynman tree theorem which is satisfied at 1-loop. Exploiting retarded boundary conditions, we give a generalization to ℓ-loop expressing the loops as integrals over the on-shell phase space of exactly ℓ particles. We argue that the corresponding integrand for ℓ > 2 does not involve the forward limit of any physical tree amplitude, except in planar gauge theories. In that case we explicitly construct the relevant physical amplitude. Beyond the planar limit, abandoning direct integral representations, we propose that loops continue to be determined implicitly by the forward limit of physical connected trees, and we formulate a precise conjecture along this line. Finally, we set up technology to compute forward amplitudes in supersymmetric theories, in which specific simplifications occur.

In the behavioral and social sciences, structural equation models (SEMs) have become widely accepted as a modeling tool for the relation between latent and observed variables. SEMs can be seen as a unification of several multivariate analysis techniques. SEM Trees combine the strengths of SEMs and the decision tree paradigm by building tree structures that separate a data set recursively into subsets with significantly different parameter estimates in a SEM. SEM Trees provide means for finding covariates and covariate interactions that predict differences in structural parameters in observed as well as in latent space and facilitate theory-guided exploration of empirical data. We describe the methodology, discuss theoretical and practical implications, and demonstrate applications to a factor model and a linear growth curve model. PMID:22984789

Urban trees can produce a number of benefits, among them improved air quality. Biogenic volatile organic compounds (BVOCs) emitted by some species are ozone precursors. Modifying future tree planting to favor lower-emitting species can reduce these emissions and aid air management districts in meeting federally mandated emissions reductions for these compounds. Changes in BVOC emissions are calculated as the result of transitioning to a lower-emitting species mix in future planting. A simplified method for calculating the emissions reduction and a Tree BVOC index based on the calculated reduction is described. An example illustrates the use of the index as a tool for implementation and monitoring of a tree program designed to reduce BVOC emissions as a control measure being developed as part of the State Implementation Plan (SIP) for the Sacramento Federal Nonattainment Area. PMID:21435760

The Loop Vertex Expansion (LVE) is a quantum field theory (QFT) method which explicitly computes the Borel sum of Feynman perturbation series. This LVE relies in a crucial way on symmetric tree weights which define a measure on the set of spanning trees of any connected graph. In this paper we generalize this method by defining new tree weights. They depend on the choice of a partition of a set of vertices of the graph, and when the partition is non-trivial, they are no longer symmetric under permutation of vertices. Nevertheless we prove they have the required positivity property to lead to a convergent LVE; in fact we formulate this positivity property precisely for the first time. Our generalized tree weights are inspired by the Brydges-Battle-Federbush work on cluster expansions and could be particularly suited to the computation of connected functions in QFT. Several concrete examples are explicitly given.

Tea tree oil is an increasingly popular ingredient in a variety of household and cosmetic products, including shampoos, massage oils, skin and nail creams, and laundry detergents. Known for its potential antiseptic properties, it has been shown to be active against a variety of bacteria, fungi, viruses, and mites. The oil is extracted from the leaves of the tea tree via steam distillation. This essential oil possesses a sharp camphoraceous odor followed by a menthol-like cooling sensation. Most commonly an ingredient in topical products, it is used at a concentration of 5% to 10%. Even at this concentration, it has been reported to induce contact sensitization and allergic contact dermatitis reactions. In 1999, tea tree oil was added to the North American Contact Dermatitis Group screening panel. The latest prevalence rates suggest that 1.4% of patients referred for patch testing had a positive reaction to tea tree oil. PMID:22653070

By a {open_quotes}tree-bank grammar{close_quotes} we mean a context-free grammar created by reading the production rules directly from hand-parsed sentences in a tree bank. Common wisdom has it that such grammars do not perform well, though we know of no published data on the issue. The primary purpose of this paper is to show that the common wisdom is wrong. In particular, we present results on a tree-bank grammar based on the Penn Wall Street Journal tree bank. To the best of our knowledge, this grammar outperforms all other non-word-based statistical parsers/grammars on this corpus. That is, it outperforms parsers that consider the input as a string of tags and ignore the actual words of the corpus.

Percussive tool use holds special interest for scientists concerned with human origins. We summarize the findings from two field sites, Taï and Fazenda Boa Vista, where percussive tool use by chimpanzees and bearded capuchins, respectively, has been extensively investigated. We describe the ecological settings in which nut-cracking occurs and focus on four aspects of nut-cracking that have important cognitive implications, namely selection of tools, tool transport, tool modification and modulation of actions to reach the goal of cracking the nut. We comment on similarities and differences in behaviour and consider whether the observed differences reflect ecological, morphological, social and/or cognitive factors. Both species are sensitive to physical properties of tools, adjust their selection of hammers conditionally to the resistance of the nuts and to transport distance, and modulate the energy of their strikes under some conditions. However, chimpanzees transport hammers more frequently and for longer distances, take into account a higher number of combinations of variables and occasionally intentionally modify tools. A parsimonious interpretation of our findings is that morphological, ecological and social factors account for the observed differences. Confirmation of plausible cognitive differences in nut-cracking requires data not yet available. PMID:26483529

Mitochondrial DNA (mtDNA) sequence variation was examined in 131 individuals of the Rosy Boa (Lichanura trivirgata) from across the species range in southwestern North America. Bayesian inference and nested clade phylogeographic analyses (NCPA) were used to estimate relationships and infer evolutionary processes. These patterns were evaluated as they relate to previously hypothesized vicariant events and new insights are provided into the biogeographic and evolutionary processes important in Baja California and surrounding North American deserts. Three major lineages (Lineages A, B, and C) are revealed with very little overlap. Lineage A and B are predominately separated along the Colorado River and are found primarily within California and Arizona (respectively), while Lineage C consists of disjunct groups distributed along the Baja California peninsula as well as south-central Arizona, southward along the coastal regions of Sonora, Mexico. Estimated divergence time points (using a Bayesian relaxed molecular clock) and geographic congruence with postulated vicariant events suggest early extensions of the Gulf of California and subsequent development of the Colorado River during the Late Miocene-Pliocene led to the formation of these mtDNA lineages. Our results also suggest that vicariance hypotheses alone do not fully explain patterns of genetic variation. Therefore, we highlight the importance of dispersal to explain these patterns and current distribution of populations. We also compare the mtDNA lineages with those based on morphological variation and evaluate their implications for taxonomy. ?? 2007 Elsevier Inc. All rights reserved.

A tree ring oxygen isotope (δ18OTR) chronology developed from one species (Cedrela odorata) growing in a single site has been shown to be a sensitive proxy for rainfall over the Amazon Basin, thus allowing reconstructions of precipitation in a region where meteorological records are short and scarce. Although these results suggest that there should be large-scale (> 100 km) spatial coherence of δ18OTR records in the Amazon, this has not been tested. Furthermore, it is of interest to investigate whether other, possibly longer-lived, species similarly record interannual variation of Amazon precipitation, and can be used to develop climate sensitive isotope chronologies. In this study, we measured δ18O in tree rings from seven lowland and one highland tree species from Bolivia. We found that cross-dating with δ18OTR gave more accurate tree ring dates than using ring width. Our "isotope cross-dating approach" is confirmed with radiocarbon "bomb-peak" dates, and has the potential to greatly facilitate development of δ18OTR records in the tropics, identify dating errors, and check annual ring formation in tropical trees. Six of the seven lowland species correlated significantly with C. odorata, showing that variation in δ18OTR has a coherent imprint across very different species, most likely arising from a dominant influence of source water δ18O on δ18OTR. In addition we show that δ18OTR series cohere over large distances, within and between species. Comparison of two C. odorata δ18OTR chronologies from sites several hundreds of kilometres apart showed a very strong correlation (r = 0.80, p < 0.001, 1901-2001), and a significant (but weaker) relationship was found between lowland C. odorata trees and a Polylepis tarapacana tree growing in the distant Altiplano (r = 0.39, p < 0.01, 1931-2001). This large-scale coherence of δ18OTR records is probably triggered by a strong spatial coherence in precipitation δ18O due to large-scale controls. These results

Land reclamation programs sponsored by several state forestry organizations are summarized in these presentations. The use of trees as a preferred specie for revegetation of surface mined lands is addressed. Modern methods of forestry can be used to make land economically and aesthetically acceptable. Tree planting techniques are presented and the role of Mycorrhizae is discussed. There are 30 papers included in this proceedings. States represented include: Alabama, Arkansas, Georgia, Illinois, Kansas, Kentucky, Maryland, Virginia, Iowa, Ohio, Pennsylvania, and West Virginia.

Tree-like structures are fundamental in nature, and it is often useful to reconstruct the topology of a tree—what connects to what—from a two-dimensional image of it. However, the projected branches often cross in the image: the tree projects to a planar graph, and the inverse problem of reconstructing the topology of the tree from that of the graph is ill-posed. We regularize this problem with a generative, parametric tree-growth model. Under this model, reconstruction is possible in linear time if one knows the direction of each edge in the graph—which edge endpoint is closer to the root of the tree—but becomes NP-hard if the directions are not known. For the latter case, we present a heuristic search algorithm to estimate the most likely topology of a rooted, three-dimensional tree from a single two-dimensional image. Experimental results on retinal vessel, plant root, and synthetic tree datasets show that our methodology is both accurate and efficient. PMID:26353004

While around 20% of the Amazonian forest has been cleared for pastures and agriculture, one fourth of the remaining forest is dedicated to wood production. Most of these production forests have been or will be selectively harvested for commercial timber, but recent studies show that even soon after logging, harvested stands retain much of their tree-biomass carbon and biodiversity. Comparing species richness of various animal taxa among logged and unlogged forests across the tropics, Burivalova et al. found that despite some variability among taxa, biodiversity loss was generally explained by logging intensity (the number of trees extracted). Here, we use a network of 79 permanent sample plots (376 ha total) located at 10 sites across the Amazon Basin to assess the main drivers of time-to-recovery of post-logging tree carbon (Table S1). Recovery time is of direct relevance to policies governing management practices (i.e., allowable volumes cut and cutting cycle lengths), and indirectly to forest-based climate change mitigation interventions. PMID:26394096

Laboratory reared Culex quinquefasciatus Say, 1823 originating from the vicinity of Belem, in northern Brazil, were allowed to engorge on caimans (Caiman c. crocodilus) infected with Hepatozoon caimani (Carini, 1909) and boas (Boa constrictor) infected with H. cf. terzii (Sambon and Seligmann, 1907) both from Para State. Engorged mosquitoes killed on successive days post-feeding (p.f.) were studied by transmission electron microscopy. Images of oocysts from 13 days p.f., caiman-fed mosquitoes were also examined by scanning electron microscopy. The Hepatozoon spp. from the respective hosts differed in their ability to develop in C. quinquefasciatus. Most female mosquitoes fed on caimans, became fully engorged, and survived beyond 22 days p.f., whereas those engorged on boa became debilitated and did not survive beyond 9 days p.f. In boa-fed mosquitoes oocysts were found on the 6th day p.f. The few mosquitoes surviving to the 9th day p.f. contained either undivided oocysts or those that had already commenced sporogenic division. By 8-10 days p.f. caiman-fed mosquitoes contained uninucleate oocysts. Sporogonic divisions were observed from day 12 p.f. onwards. Although sporogenic development conformed in general with the previously reported accounts, the study allowed a more detailed examination of the plasmalemmal endocytotic system, and the consolidation of the crystalline body in specialized 'factories' of cystalline material. Sporozoite differentiation occasionally started on the 18th day p.f., but otherwise was observed only on day 22 p.f. PMID:12954016

In an edaphically heterogeneous area in the Peruvian Amazon, clay soils and nutrient-poor white sands each harbor distinctive plant communities. To determine whether a trade-off between growth and antiherbivore defense enforces habitat specialization on these two soil types, we conducted a reciprocal transplant study of seedlings of 20 species from six genera of phylogenetically independent pairs of edaphic specialist trees and manipulated the presence of herbivores. Clay specialist species grew significantly faster than white-sand specialists in both soil types when protected from herbivores. However, when unprotected, white-sand specialists dominated in white-sand forests and clay specialists dominated in clay forests. Therefore, habitat specialization in this system results from an interaction of herbivore pressure with soil type. PMID:15286371

The Amazon basin is one of the world's key centers of atmospheric convection and acts as an engine for global hydrologic circulation. Despite its importance, a paucity of high resolution climate data exists for this region, in large part due to a poor instrumental record. The oxygen isotopic measurement of meteoric water has been used extensively to reconstruct past temperatures derived from ice cores, corals, and tree rings but is only recently recognized as a precipitation proxy in the tropics. Here we present a continuous, highly resolved (intra-annual), 345 year oxygen isotopic record from the Madre de Dios department in Southeastern Peru. Using tropical hardwood species Dipteryx micrantha, we present oxygen (and carbon) isotopic data from digested tree ring cellulose. We also present some of the first intra-annual (early wood versus late wood) isotopic data on this old growth tropical species. We demonstrate the utility of Amazon tropical tree rings to accurately record rainfall. We also identify that this meteoric water was delivered to the region via the South American Low-level Jet (SALLJ), which develops over the Atlantic and is the major water source during the South American Summer Monsoon.

This document might easily have been called "How To Use Trees To Save Energy". It presents the energy saving advantages of landscaping the home and community with trees. The discussion includes: (1) landscaping advice to obtain the benefits of tree shade; (2) the heat island phenomenon in cities; (3) how and where to properly plant trees for…

To investigate circulation of mimiviruses in the Amazon Region of Brazil, we surveyed 513 serum samples from domestic and wild mammals. Neutralizing antibodies were detected in 15 sample pools, and mimivirus DNA was detected in 9 pools of serum from capuchin monkeys and in 16 pools of serum from cattle. PMID:24564967

Presents a classroom project dealing with tropical deforestation in the Brazilian Amazon. Addresses environmental consequences and economic, social, and political causes. Involves both lectures and individual research and reports by student groups on deforestation causes. Includes a note-playing activity in which students make recommendations for…

The revolutionary electronic reading device, Amazon's Kindle, is already obsolete. Such is the breakneck speed of technology that the machine touted to spell the death of printed books is already heading for the scrap heap, replaced by e-readers like the iPad that access the Internet, make phone calls, download movies, and connect users with all…

Coarse and fine suspended particulate organic materials and dissolved humic and fulvic acids transported by the Amazon River all contain bomb-produced carbon-14, indicating relatively rapid turnover of the parent carbon pools. However, the carbon-14 contents of these coexisting carbon forms are measurably different and may reflect varying degrees of retention by soils in the drainage basin. 20 references, 1 table.

The role of the Amazon rainforest on earth climatic system is well recognized. To keep forest wellbeing and the fragile balance between the rainforest and the atmosphere, the Amazon must contain a satisfactory amount of nutrients to support the plants. The extensive rain and floods wash most of the soluble nutrients from the rainforest soil, leaving behind acidic kaolinite clay or sandy soil, with limited minerals for plant growth. It was suggested that lack of mineral in the soil may be replenished by deposition of Saharan mineral dust. Using remote sensing data (from the A-train satellites constellation) following with in-situ measurements (as part of the AMazonian Aerosol CharacteriZation Experiment (AMZE) campaign), ground-based data (from AErosol RObotic NETwork (AERONET)) and back trajectory calculations, we analyzed Saharan dust transport toward the Amazon basin during the AMZE period (Feb 7 to Mar 14, 2008). Dust mass, sink, vertical distribution and surface wind speeds were analyzed over the Bodele depression (located in Chad), where most of the dust is emitted, along the Atlantic Ocean and near the Brazilian coastline. Using an integrated data analysis approach we followed dust packages from their emission in the Sahara to their sink in the Amazon forest.

The distribution of trace metals (V, Cr, Mn, Co, Cu, Zn, As, Rb, Sr, Mo, Cd, Sb, Cs, Ba, U) was investigated in surface waters and associated particulates in the Amazon mainstream (Solimões and Amazon rivers). Dissolved V, Cu, As, Sr, Ba, U correlate with major ions and appear to be predominantly derived from soluble rocks occurring in the Amazon upper basin. These elements appear conservative in waters and are progressively diluted by less-concentrated waters coming from the lowland and shield areas. A monthly time series obtained at the Óbidos gauging station shows that temporal variability of trace element concentrations reflects the source, remobilization and/or biological processes occurring in the channel or in the surrounding floodplain lakes. The trace element concentrations in the particulate matter show a clear relationship with the location of the samples. V, Co, Cr, Mn, Sr, Cs and Ba concentrations are higher in the Solimões and the Rio Negro is enriched in Fe, Al and Zn. In the Rio Solimões, V, Cr, Mn, Co, Ni, Zn, Cs and Pb are almost entirely carried by the river particulate matter; Cu, Rb, Sr, Ba and U are transported mainly by the suspended particles, but a dissolved phase contributes to the transport. In the Rio Negro, the proportion of elements transported by the dissolved phase is higher for the whole set of elements. The implications of these results allow us to compute the fluxes from the Amazon River to the Atlantic Ocean.

The long-term viability of a forest industry in the Amazon region of Brazil depends on the maintenance of adequate timber volume and growth in healthy forests. Using extensive high-resolution satellite analyses, we studied the forest damage caused by recent logging operations and the likelihood that logged forests would be cleared within 4 years after timber harvest. Across 2,030,637 km2 of the Brazilian Amazon from 1999 to 2004, at least 76% of all harvest practices resulted in high levels of canopy damage sufficient to leave forests susceptible to drought and fire. We found that 16 ± 1% of selectively logged areas were deforested within 1 year of logging, with a subsequent annual deforestation rate of 5.4% for 4 years after timber harvests. Nearly all logging occurred within 25 km of main roads, and within that area, the probability of deforestation for a logged forest was up to four times greater than for unlogged forests. In combination, our results show that logging in the Brazilian Amazon is dominated by highly damaging operations, often followed rapidly by deforestation decades before forests can recover sufficiently to produce timber for a second harvest. Under the management regimes in effect at the time of our study in the Brazilian Amazon, selective logging would not be sustained. PMID:16901980

The long-term viability of a forest industry in the Amazon region of Brazil depends on the maintenance of adequate timber volume and growth in healthy forests. Using extensive high-resolution satellite analyses, we studied the forest damage caused by recent logging operations and the likelihood that logged forests would be cleared within 4 years after timber harvest. Across 2,030,637 km2 of the Brazilian Amazon from 1999 to 2004, at least 76% of all harvest practices resulted in high levels of canopy damage sufficient to leave forests susceptible to drought and fire. We found that 16+/-1% of selectively logged areas were deforested within 1 year of logging, with a subsequent annual deforestation rate of 5.4% for 4 years after timber harvests. Nearly all logging occurred within 25 km of main roads, and within that area, the probability of deforestation for a logged forest was up to four times greater than for unlogged forests. In combination, our results show that logging in the Brazilian Amazon is dominated by highly damaging operations, often followed rapidly by deforestation decades before forests can recover sufficiently to produce timber for a second harvest. Under the management regimes in effect at the time of our study in the Brazilian Amazon, selective logging would not be sustained. PMID:16901980

To detect areas with increased case-detection rates, we used spatial scan statistics to identify 5 of 10 clusters of leprosy in the Amazon region of Brazil. Despite increasing economic development, population growth, and road infrastructure, leprosy is endemic to this region, which is a source of case exportation to other parts of Brazil. PMID:19331763

A near-nadir view of the mouth of the Amazon River, that shows all signs of being a relatively healthy system, breathing and exhaling. The well-developed cumulus field over the forested areas on both the north and south sides of the river (the view is slightly to the west) shows that good evapotranspiration is underway.

The Amazon River mainstem of Brazil is so regulated by differences in the timing of tributary inputs and by seasonal storage of water on floodplains that maximum discharges exceed minimum discharges by a factor of only 3. Large tributaries that drain the southern Amazon River basin reach their peak discharges two months earlier than does the mainstem. The resulting backwater in the lowermost 800 km of two large southern tributaries, the Madeira and Puru??s rivers, causes falling river stages to be as much as 2-3 m higher than rising stages at any given discharge. Large tributaries that drain the northernmost Amazon River basin reach their annual minimum discharges three to four months later than does the mainstem. In the lowermost 300-400 km of the Negro River, the largest northern tributary and the fifth largest river in the world, the lowest stages of the year correspond to those of the Amazon River mainstem rather than to those in the upstream reaches of the Negro River. ?? 1991 Springer-Verlag New York Inc.

In this article, the authors discuss the importance of education policies that aim at diminishing social disparities in poor countries, focusing on a program in higher education developed in the state of Rondonia in the Brazilian Amazon. Rondonia is a region in which people have suffered deeply from the consequences of social inequalities. Many…

The western Amazon is one of the world’s last high-biodiversity wilderness areas, characterized by extraordinary species richness and large tracts of roadless humid tropical forest. It is also home to an active hydrocarbon (oil and gas) sector, characterized by operations in extremely remote areas that require new access routes. Here, we present the first integrated analysis of the hydrocarbon sector and its associated road-building in the western Amazon. Specifically, we document the (a) current panorama, including location and development status of all oil and gas discoveries, of the sector, and (b) current and future scenario of access (i.e. access road versus roadless access) to discoveries. We present an updated 2014 western Amazon hydrocarbon map illustrating that oil and gas blocks now cover 733 414 km2, an area much larger than the US state of Texas, and have been expanding since the last assessment in 2008. In terms of access, we documented 11 examples of the access road model and six examples of roadless access across the region. Finally, we documented 35 confirmed and/or suspected untapped hydrocarbon discoveries across the western Amazon. In the Discussion, we argue that if these reserves must be developed, use of the offshore inland model—a method that strategically avoids the construction of access roads—is crucial to minimizing ecological impacts in one of the most globally important conservation regions.

The Amazon Basin plays key roles in the carbon and water cycles, climate change, atmospheric chemistry, and biodiversity. It has already been changed significantly by human activities, and more pervasive change is expected to occur in the coming decades. It is therefore essential to establish long-term measurement sites that provide a baseline record of present-day climatic, biogeochemical, and atmospheric conditions and that will be operated over coming decades to monitor change in the Amazon region, as human perturbations increase in the future. The Amazon Tall Tower Observatory (ATTO) has been set up in a pristine rain forest region in the central Amazon Basin, about 150 km northeast of the city of Manaus. Two 80 m towers have been operated at the site since 2012, and a 325 m tower is nearing completion in mid-2015. An ecological survey including a biodiversity assessment has been conducted in the forest region surrounding the site. Measurements of micrometeorological and atmospheric chemical variables were initiated in 2012, and their range has continued to broaden over the last few years. The meteorological and micrometeorological measurements include temperature and wind profiles, precipitation, water and energy fluxes, turbulence components, soil temperature profiles and soil heat fluxes, radiation fluxes, and visibility. A tree has been instrumented to measure stem profiles of temperature, light intensity, and water content in cryptogamic covers. The trace gas measurements comprise continuous monitoring of carbon dioxide, carbon monoxide, methane, and ozone at five to eight different heights, complemented by a variety of additional species measured during intensive campaigns (e.g., VOC, NO, NO2, and OH reactivity). Aerosol optical, microphysical, and chemical measurements are being made above the canopy as well as in the canopy space. They include aerosol light scattering and absorption, fluorescence, number and volume size distributions, chemical

Forest structure and dynamics vary across the Amazon Basin in an east-west gradient coincident with variations in soil fertility and geology. This has resulted in the hypothesis that soil fertility may play an important role in explaining Basin-wide variations in forest biomass, growth and stem turnover rates. Soil samples were collected in a total of 59 different forest plots across the Amazon Basin and analysed for exchangeable cations, carbon, nitrogen and pH, with several phosphorus fractions of likely different plant availability also quantified. Physical properties were additionally examined and an index of soil physical quality developed. Bivariate relationships of soil and climatic properties with above-ground wood productivity, stand-level tree turnover rates, above-ground wood biomass and wood density were first examined with multivariate regression models then applied. Both forms of analysis were undertaken with and without considerations regarding the underlying spatial structure of the dataset. Despite the presence of autocorrelated spatial structures complicating many analyses, forest structure and dynamics were found to be strongly and quantitatively related to edaphic as well as climatic conditions. Basin-wide differences in stand-level turnover rates are mostly influenced by soil physical properties with variations in rates of coarse wood production mostly related to soil phosphorus status. Total soil P was a better predictor of wood production rates than any of the fractionated organic- or inorganic-P pools. This suggests that it is not only the immediately available P forms, but probably the entire soil phosphorus pool that is interacting with forest growth on longer timescales. A role for soil potassium in modulating Amazon forest dynamics through its effects on stand-level wood density was also detected. Taking this into account, otherwise enigmatic variations in stand-level biomass across the Basin were then accounted for through the

The Amazon River is the largest river in the world in volume of water. The basin has 6.915.000 Km2, but the last gauging station of Amazon River with regular and continuous measurements of discharge and sediment transport are Óbidos station with 4.670.000 Km2. Óbidos It is also the last stream gauge station with no or less tidal effect observed from Atlantic Ocean and registered. The Clim-Amazon Project has been done the first measurements with the purpose to acquire geochemical and hydrological informations downstream Óbidos station. The system studied has input data of sediments load after Óbidos, and the output of the system, at the Amazon River is at Macapá, close to the mouth of Amazon river. And flow the main tributaries along this way, between these two stations. To evaluate the geochemical source, the mass balance, and isotopic geochemistry is necessary the informations about the traces the main chemical elements, transported by the discharge from the main rivers of this area: Tapajos, Xingu, Paru, Jari, and the Amazon River at Monte Alegre and at Macapá. The ADCP - Acoustic Doppler Current Profile, equipment is used to get the stream discharge value at the moment of transect. But also get two more informations necessary for the geochemistry, and do the collecting points profiles. The place with most velocity at transect or the place with more backscatter. These informations are related with the sediment load of the river. Or which one can provide the better idea of how are transported the sediments at the measured transects. What was to observe was the main speed of the stream flow or the main backscatter sectional. The main purpose of the work is to show how works the correlation between the backscatter and speed data given by the ADCP, downstream Óbidos, and the main confluences of Amazon River, until Macapá. The ADCP measurements support the geochemical studies and the course of sediments load transported by the discharge of these rivers.

Old-growth forest ecosystems comprise a mosaic of patches in different successional stages, with the fraction of the landscape in any particular state relatively constant over large temporal and spatial scales. The size distribution and return frequency of disturbance events, and subsequent recovery processes, determine to a large extent the spatial scale over which this old-growth steady state develops. Here, we characterize this mosaic for a Central Amazon forest by integrating field plot data, remote sensing disturbance probability distribution functions, and individual-based simulation modeling. Results demonstrate that a steady state of patches of varying successional age occurs over a relatively large spatial scale, with important implications for detecting temporal trends on plots that sample a small fraction of the landscape. Long highly significant stochastic runs averaging 1.0 Mg biomass⋅ha−1⋅y−1 were often punctuated by episodic disturbance events, resulting in a sawtooth time series of hectare-scale tree biomass. To maximize the detection of temporal trends for this Central Amazon site (e.g., driven by CO2 fertilization), plots larger than 10 ha would provide the greatest sensitivity. A model-based analysis of fractional mortality across all gap sizes demonstrated that 9.1–16.9% of tree mortality was missing from plot-based approaches, underscoring the need to combine plot and remote-sensing methods for estimating net landscape carbon balance. Old-growth tropical forests can exhibit complex large-scale structure driven by disturbance and recovery cycles, with ecosystem and community attributes of hectare-scale plots exhibiting continuous dynamic departures from a steady-state condition. PMID:23359707

Tropical forest countries are struggling with the partially conflicting policy objectives of socioeconomic development, forest conservation, and safeguarding the livelihoods of local forest-dependent people. We worked with communities in the lower Tapajós region of the central Brazilian Amazon for over 10 years to understand their traditional and present land use practices, the constraints, and decision making processes imposed by their biophysical, socioeconomic, and political environment, and to facilitate development trajectories to improve the livelihoods of forest communities while conserving the forest on the farms and in the larger landscape. The work focused on riverine communities initially in the Tapajós National Forest and then in the Tapajós-Arapiuns Extractive Reserve. These communities have a century-old tradition of planting rubber agroforests which despite their abandonment during the 1990s still widely characterize the vegetation of the river banks, especially in the two protected areas where they are safe from the recent expansion of mechanized rice and soybean agriculture. The project evolved from the capacity-building of communities in techniques to increase the productivity of the rubber agroforests without breaking their low-input and low-risk logic, to the establishment of a community enterprise that allowed reserve inhabitants to reforest their own land with tree species of their choice and sell reforestation (not carbon) credits to local timber companies while retaining the ownership of the trees. By making land use practices economically more viable and ecologically more appropriate for protected areas, the project shows ways to strengthen the system of extractive and sustainable development reserves that protects millions of hectares of Amazon forest with the consent of the communities that inhabit them. PMID:23636205

Tropical forest countries are struggling with the partially conflicting policy objectives of socioeconomic development, forest conservation, and safeguarding the livelihoods of local forest-dependent people. We worked with communities in the lower Tapajós region of the central Brazilian Amazon for over 10 years to understand their traditional and present land use practices, the constraints, and decision making processes imposed by their biophysical, socioeconomic, and political environment, and to facilitate development trajectories to improve the livelihoods of forest communities while conserving the forest on the farms and in the larger landscape. The work focused on riverine communities initially in the Tapajós National Forest and then in the Tapajós-Arapiuns Extractive Reserve. These communities have a century-old tradition of planting rubber agroforests which despite their abandonment during the 1990s still widely characterize the vegetation of the river banks, especially in the two protected areas where they are safe from the recent expansion of mechanized rice and soybean agriculture. The project evolved from the capacity-building of communities in techniques to increase the productivity of the rubber agroforests without breaking their low-input and low-risk logic, to the establishment of a community enterprise that allowed reserve inhabitants to reforest their own land with tree species of their choice and sell reforestation (not carbon) credits to local timber companies while retaining the ownership of the trees. By making land use practices economically more viable and ecologically more appropriate for protected areas, the project shows ways to strengthen the system of extractive and sustainable development reserves that protects millions of hectares of Amazon forest with the consent of the communities that inhabit them.

We present a detailed study of simple “tree" models for off equilibrium dynamics and aging in glassy systems. The simplest tree describes the landscape of a random energy model, whereas multifurcating trees occur in the solution of the Sherrington-Kirkpatrick model. An important ingredient taken from these models is the exponential distribution of deep free-energies, which translate into a power-law distribution of the residence time within metastable “valleys". These power law distributions have infinite mean in the spin-glass phase and this leads to the aging phenomenon. To each level of the tree is associated an overlap and the exponent of the time distribution. We solve these models for a finite (but arbitrary) number of levels and show that a two-level tree accounts very well for many experimental observations (thermoremanent magnetization, a.c. susceptibility, second noise spectrum....). We introduce the idea that the deepest levels of the tree correspond to equilibrium dynamics whereas the upper levels correspond to aging. Temperature cycling experiments suggest that the borderline between the two is temperature dependent. The spin-glass transition corresponds to the temperature at which the uppermost level is put out of equilibrium but is subsequently followed by a sequence of (dynamical) phase transitions corresponding to non equilibrium dynamics within deeper and deeper levels. We tentatively try to relate this “tree" picture to the real space “droplet" model, and speculate on how the final description of spin-glasses might look like.

Large rivers are important to marine air-sea interactions and local biogeochemistry. By modifying the local and regional sea surface salinity (SSS), the freshwater inputs associated with major river plumes cause the formation of a layer near the surface with salinity stratification but near-uniform temperature, known as the barrier layer (BL). The BL prevent exchanges between the warm mixed layer and the cold ocean interior, and thus affect the vertical mixing of heat between the mixed layer and the thermocline. This can have an important impact on air-sea interactions such as hurricanes intensification. Our study focuses on the Amazon and Orinoco rivers, respectively the first and fourth world's largest rivers in terms of discharge. Amazon-Orinoco waters are carried northwestward by the North Brazilian Current (NBC) during the first part of the year and then eastward along the North Equatorial Counter Current. The hurricane season in the tropical Atlantic extends from June through November, the period of Amazon-Orinoco plume maximum northwestward extension, on a hurricane route. Being able to monitor the spatial and temporal dispersal of the Amazon and Orinoco river plumes is therefore important to better understand their impact on barrier layer thickness and SST variation at seasonal to interannual time scales. Variations from year to year in spatial extent of the plume may result from several processes including changes in Amazon discharge, ocean advection, turbulent mixing, and wind field. Satellite remote sensing data provide several means to visualize the surface dispersal of the Amazon plume, with ocean color data being the first to track it in the tropical Atlantic ocean further than 1000 km from shore. With the launches of the ESA Soil Moisture and Ocean Salinity (SMOS) and the NASA Aquarius/SAC-D missions, we are now able to use the SSS observations in combination with ocean color, altimetry and sea surface temperature observations to track surface plume

Remote sensing of the Amazon basin with passive and active microwave techniques were applied to determine the temporally varying extent of inundation and associated vegetation, and used in conjunction with field measurements to calculate regional rates of carbon dioxide emission from wetlands to the atmosphere. Monthly inundation areas were derived from analysis of the 37-GHz polarization difference observed by the Scanning Multichannel Microwave Radiometer (1979 to 1987) for the mainstem Amazon floodplain in Brazil, the Llanos de Moxos (Beni and Mamore rivers) in Bolivia, the Bananal Island (Araguaia River) and Roraima savannas. Maximum areas subject to inundation, including permanent open waters in rivers and lakes, were as follows (in km2): mainstem Amazon 97,400; Moxos 92,000; Bananal 58,500, and Roraima 16,500. Data from the Japanese Earth Resources Satellite-1, L-band synthetic aperture radar were used to determine inundation and wetland vegetation for a quadrat in the central Amazon basin (0o N to 8o S, 72o W to 54o W) at high water (May-June 1996) and low water (October 1995). Flooded area of rivers and floodplains (> 100 m in width) ranged from 79,000 km2 to 290,000 km2. When combined with estimates of inundation associated with streams not detected by the radar, a maximum area of 350,000 km2 (or 20% of the quadrat) was flooded. Combining the areal extent of flooding and measurements of free dissolved CO2 with an evasion model leads to outgassing of CO2 from inundated surfaces to the atmosphere in the central Amazon of 1.1 plus or minus 0.2 MgC ha-1 y-1. Extrapolated over the whole basin, the flux is 10 times the fluvial export of organic carbon to the ocean.

Toxoplasma gondii is an important pathogen in aquatic mammals and its presence in these animals may indicate water contamination of aquatic environment by oocysts. Serum samples from 95 dolphins from free-living Amazon River dolphins (Inia geoffrensis) from Sustainable Development Reserve Mamirauá (...

Toxoplasma gondii is an important pathogen in aquatic mammals and its presence in these animals may indicate water contamination of aquatic environment by oocysts. Serum samples from 95 dolphins from free-living Amazon River dolphins (Inia geoffrensis) from Sustainable Development Reserve Mamirauá (...

In this paper, we introduce a new type of tree-based method, reinforcement learning trees (RLT), which exhibits significantly improved performance over traditional methods such as random forests (Breiman, 2001) under high-dimensional settings. The innovations are three-fold. First, the new method implements reinforcement learning at each selection of a splitting variable during the tree construction processes. By splitting on the variable that brings the greatest future improvement in later splits, rather than choosing the one with largest marginal effect from the immediate split, the constructed tree utilizes the available samples in a more efficient way. Moreover, such an approach enables linear combination cuts at little extra computational cost. Second, we propose a variable muting procedure that progressively eliminates noise variables during the construction of each individual tree. The muting procedure also takes advantage of reinforcement learning and prevents noise variables from being considered in the search for splitting rules, so that towards terminal nodes, where the sample size is small, the splitting rules are still constructed from only strong variables. Last, we investigate asymptotic properties of the proposed method under basic assumptions and discuss rationale in general settings. PMID:26903687

The submarine Amazon Delta is one major sink in the Amazon source-to-sink system. It is estimated, that the Amazon transports around 1200 Mt/yr. Around 50% of this river sediment load, namely 400 - 800 Mt/yr, is stored on the submarine delta, leading to sedimentation rates of decimeters per year (Nittrouer et al., 1995). The majority of the remaining sediments is deposited on the lower delta plain of the Amazon, but another significant portion is accumulated at the Amapa shoreline or is bypassed further northwestwards. These sediment budget calculations are mainly based on radioisotopic profiles measured at sediment cores in the frame of the AmasSeds project, which was carried out in the 1980ties and 1990ties (Nittrouer et al., 1995). Here we present another approach for calculating mass fluxes in the Amazon system. Within the Project AMADEUS, a cooperation between the MARUM, Bremen, Germany and the University Sao Paulo, Brazil, high-resolution seismic multichannel seismic data and sediment echosounder data (PARASOUND) were collected during Cruise MSM20/3 in February/March 2012. Main emphases of the surveying were set to the forset and bottomset of the delta, where most of the accretion occurs. A special outcome of the new data is the comparison with PARASOUND data collected in 1996 during Cruise M34/4. Due to several crossing points of both data sets it is now possible to carry out direct measurements of the accumulation during these 16 years. Another time horizon is a prominent unconformity spreading over the submarine delta, since the sedimentation on top of this unconformity had been dated to start roughly 100 yrs ago (Sommerfield et al., 1995). Mapping of this unconformity as well as the reflector representing the seafloor of 1996 gives the opportunity to calculate volumes and mass of the sediment stored within the survey area for two different time spans. First calculations show, that the sediment accumulation on the submarine delta since 1996 is

Old-growth forests are subject to substantial changes in structure and species composition due to the intensification of human activities, gradual climate change and extreme weather events. Trees store ca. 90 % of the total AGB above-ground biomass in tropical forests and AGB estimation models are crucial for forest management and conservation. In the Central Amazon, predicting AGB at large spatial-scales is a challenging task due to the heterogeneity of successional stages, high tree species diversity and inherent variations in allometry and architecture. We parameterized generic AGB estimation models applicable across species and a wide range of structural and compositional variation related to species sorting into height layers as well as frequent natural disturbances. We used 727 trees from 101 genera and at least 135 species harvested in a contiguous forest near Manaus, Brazil. Sampling from this dataset we assembled six scenarios designed to span existing gradients in floristic composition and size distribution in order to select models that best predict AGB at the landscape-level across successional gradients. We found that good individual tree model fits do not necessarily translate into good predictions of AGB at the landscape level. When predicting AGB (dry mass) over scenarios using our different models and an available pantropical model, we observed systematic biases ranging from -31 % (pantropical) to +39 %, with RMSE root-mean-square error values of up to 130 Mg ha-1 (pantropical). Our first and second best models had both low mean biases (0.8 and 3.9 %, respectively) and RMSE (9.4 and 18.6 Mg ha-1) when applied over scenarios. Predicting biomass correctly at the landscape-level in complex tropical forests, especially allowing good performance at the margins of data availability for model parametrization, requires the inclusion of predictors related to species architecture. The model of interest should comprise the floristic composition and size

Allergic reactions to tree nuts can be serious and life threatening. Considerable research has been conducted in recent years in an attempt to characterize those allergens that are most responsible for allergy sensitization and triggering. Both native and recombinant nut allergens have been identified and characterized and, for some, the IgE-reactive epitopes described. Some allergens, such as lipid transfer proteins, profilins, and members of the Bet v 1-related family, represent minor constituents in tree nuts. These allergens are frequently cross-reactive with other food and pollen homologues, and are considered panallergens. Others, such as legumins, vicilins, and 2S albumins, represent major seed storage protein constituents of the nuts. The allergenic tree nuts discussed in this review include those most commonly responsible for allergic reactions such as hazelnut, walnut, cashew, and almond as well as those less frequently associated with allergies including pecan, chestnut, Brazil nut, pine nut, macadamia nut, pistachio, coconut, Nangai nut, and acorn. PMID:12915766

CART (Breiman et al., Classification and Regression Trees, Chapman and Hall, New York, 1984) and (exhaustive) CHAID (Kass, Appl Stat 29:119-127, 1980) figure prominently among the procedures actually used in data based management, etc. CART is a well-established procedure that produces binary trees. CHAID, in contrast, admits multiple splittings, a feature that allows to exploit the splitting variable more extensively. On the other hand, that procedure depends on premises that are questionable in practical applications. This can be put down to the fact that CHAID relies on simultaneous Chi-Square- resp. F-tests. The null-distribution of the second test statistic, for instance, relies on the normality assumption that is not plausible in a data mining context. Moreover, none of these procedures - as implemented in SPSS, for instance - take ordinal dependent variables into account. In the paper we suggest an alternative tree-algorithm that: Requires explanatory categorical variables

Climate change may drive a late-century replacement of Amazon forests by fire-prone scrub vegetation. These model-based predictions do not consider the positive feedbacks between fire disturbance and extreme weather events, which could accelerate forest replacement. Here we present the first field-based evidence of a near-term tipping point in Amazon forest fire regimes. We found a two to four-fould increase in fire-induced tree mortality during an extreme drought. This threshold mortality response had a cascading effect, causing sharp declines in canopy cover and aboveground live biomass relative to an unburned control, while favoring widespread invasion by flammable grasses across 32-37% of the forest edge. Regional forest fires burned up to 12% of southeast Amazon forests during recent droughts, but less than 1% in non-drought years. The process of severe climate-induced forest degradation predicted by models for the later part of this century could be triggered sooner by widespread and high-intensity fires.

Higher-level relationships among placental mammals are mostly resolved, but several polytomies remain contentious. Song et al. (2012) claimed to have resolved three of these using shortcut coalescence methods (MP-EST, STAR) and further concluded that these methods, which assume no within-locus recombination, are required to unravel deep-level phylogenetic problems that have stymied concatenation. Here, we reanalyze Song et al.'s (2012) data and leverage these re-analyses to explore key issues in systematics including the recombination ratchet, gene tree stoichiometry, the proportion of gene tree incongruence that results from deep coalescence versus other factors, and simulations that compare the performance of coalescence and concatenation methods in species tree estimation. Song et al. (2012) reported an average locus length of 3.1 kb for the 447 protein-coding genes in their phylogenomic dataset, but the true mean length of these loci (start codon to stop codon) is 139.6 kb. Empirical estimates of recombination breakpoints in primates, coupled with consideration of the recombination ratchet, suggest that individual coalescence genes (c-genes) approach ∼12 bp or less for Song et al.'s (2012) dataset, three to four orders of magnitude shorter than the c-genes reported by these authors. This result has general implications for the application of coalescence methods in species tree estimation. We contend that it is illogical to apply coalescence methods to complete protein-coding sequences. Such analyses amalgamate c-genes with different evolutionary histories (i.e., exons separated by >100,000 bp), distort true gene tree stoichiometry that is required for accurate species tree inference, and contradict the central rationale for applying coalescence methods to difficult phylogenetic problems. In addition, Song et al.'s (2012) dataset of 447 genes includes 21 loci with switched taxonomic names, eight duplicated loci, 26 loci with non-homologous sequences that are

Millions of hectares of future timber concessions are slated to be implemented within large public forests under the forest law passed in 2006 by the Brazilian Congress. Additional millions of hectares of large, privately owned forests and smaller areas of community forests are certified as well managed by the Forest Stewardship Council, based on certification standards that will be reviewed in 2007. Forest size and ownership are two key factors that influence management objectives and the capacity of forest managers to achieve them. Current best ecological practices for timber production from Brazil's native Amazon forests are limited to reduced-impact logging (RIL) systems that minimize the environmental impacts of harvest operations and that obey legal restrictions regarding minimum diameters, rare species, retention of seed trees, maximum logging intensity, preservation of riparian buffers, fire protection, and wildlife conservation. Compared with conventional, predatory harvesting that constitutes >90% of the region's timber production, RIL dramatically reduces logging damage and helps maintain forest cover and the presence of rare tree species, but current RIL guidelines do not assure that the volume of timber removed can be sustained in future harvests. We believe it is counterproductive to expect smallholders to subscribe to additional harvest limitations beyond RIL, that larger private forested landholdings managed for timber production should be sustainable with respect to the total volume of timber harvested per unit area per cutting cycle, and that large public forests should sustain volume production of individual harvested species. These additional requirements would improve the ecological sustainability of forest management and help create a stable forest-based sector of the region's economy, but would involve costs associated with lengthened cutting cycles, reduced harvest intensities, and/or postharvest silviculture to promote adequate growth and

Until recently it was thought that remotely sensed data was not sensitive enough to detect and quantify selective logging damage in tropical forests. Spectral mixture analysis of multispectral remote sensing data resolves fractions of surface covered by photosynthetic vegetation (PV), non-photosynthetic vegetation (NPV = litter and woody debris), and bare soil. We have successfully applied this method to detect selective logging in the Amazon and have developed an equation to estimate canopy gap fraction in selectively logged areas using a combination of field and satellite data. The Tapajos National Forest in Para is the site of a controlled logging experiment where reduced impact logging (RIL) has been measured and monitored. In RIL, vines and lianas are cut before trees are felled. This practice should reduce damage to surrounding areas and thus may result in logging damage that correlates to the size and number of trees removed. We tested how well an estimate of gap fraction from EO-1 Advanced Land Imager data correlated with harvested wood volume in logging blocks. Percent gap ranged from 9-22%, while volume harvested ranged from 26-54 m3/ha. Remote sensing derived canopy gap fraction data can also be used to quantify green canopy biomass and nutrients transferred to the ground during logging. Canopy biomass transferred averaged 25.07 kg/ha for 5 logging blocks immediately following timber harvests in 2001. Canopy carbon and nitrogen transfers were estimated at 12.56 kg C/ha and 0.44 kg N/ha for the same year. Our results suggest that remotely sensed data can provide valuable information about the spatial characteristics and quantity of C and nutrients altered by selective logging.

The complex horizontal and vertical structure in tropical forests generates a diversity of light environments for canopy and understory trees. These 3D light profiles are dynamic on diurnal and seasonal time scales based on changes in solar illumination and the fraction of diffuse light. Understanding this variability is critical for improving ecosystem models and interpreting optical and LiDAR remote sensing data from tropical forests. Here, we initialized the Discrete Anisotropic Radiative Transfer (DART) model using dense airborne LiDAR data (>20 returns m2) from three forest sites in the central and eastern Amazon. Forest scenes derived from airborne LiDAR data were tested using modeled and observed large-footprint LiDAR data from the ICESat-GLAS sensor. Next, diurnal and seasonal profiles of photosynthetically active radiation (PAR) for each forest site were simulated under clear sky and cloudy conditions using DART. Incident PAR was summarized for canopy, understory, and ground levels. Our study illustrates the importance of realistic canopy models for accurate representation of LiDAR and optical radiative transfer. In particular, canopy rugosity and ground topography information from airborne LiDAR data provided critical 3D information that cannot be recreated using stem maps and allometric relationships for crown dimensions. The spatial arrangement of canopy trees altered PAR availability, even for dominant individuals, compared to downwelling measurements from nearby eddy flux towers. Pseudo-realistic branch and leaf architecture was also essential for recreating multiple scattering within canopies at near-infrared wavelengths commonly used for LiDAR remote sensing and quantifying PAR attenuation from shading within and between canopies. These findings point to the need for more spatial information on forest structure to improve the representation of light availability in models of tropical forest productivity.

Climate, rural economies, and ecosystems are connected in the Amazon basin through complex interactions with important implications for greenhouse gas fluxes, biodiversity, and the well-being of rural people. In the historically severe drought of 2005, drought-induced tree mortality and fire-dependent land uses (cattle ranching, swidden agriculture) favored forest fire as it increased the likelihood of further drought. Regions with fire-sensitive investments in the landscape, including improved cattle forage, agroforestry systems, and forest management, were also regions of high investments in the prevention of accidental fire, and experienced low levels of forest fire, in a negative feedback cycle. Some areas of agroindustrial production(cultivated soy) also experienced low forest fire occurrence because of the low flammability of crop fields. The combination of drought- and fire-induced carbon emissions can approach one billion tons in years of severe drought. The negative feedbacks between some types of land use and forest fire could substantially reduce these emissions in the short term.

To assess the role of Amazonia as a source or a sink for atmospheric CO2, we are using ground-based biometry measurements together with whole-system CO2 fluxes (via eddy covariance) to explore the ecological and climatic controls on the carbon balance at an old-growth Amazon forest (Tapajos National Forest, Santarem, Para, Brazil). Here, we focus on the initial 6 months of eddy covariance results from a new system that measures eddy covariance at two levels (47 m and 58 m) and measures canopy CO2 storage in two ways: by cycling through tower-mounted sample inlets at 8 levels (over 16 minutes), and by making a single integrated measurement of all 8 levels simultaneously. The integrated canopy storage measurement gives a storage flux estimate with much lower noise than the more conventional method of interpolating through separate measurements staggered in time, allowing for improved estimates of net ecosystem exchange (eddy flux + storage flux). This provides a cleaner way to identify nighttime periods when turbulent mixing was weak. We show that such periods of weak mixing clearly cause underestimates in flux, but that a continuous low-noise storage flux measurement can make adjustments for the effects of such periods more robust. After adjusting for periods of weak mixing, this tropical forest site appears to be in approximate carbon balance during this 6-month period -- in agreement with the biometry observations over the first two years that woody biomass increment is in approximate balance with tree mortality.

This study compared soil archaeal communities of the Amazon forest with that of an adjacent area under oil palm cultivation by 16S ribosomal RNA gene pyrosequencing. Species richness and diversity were greater in native forest soil than in the oil palm-cultivated area, and 130 OTUs (13.7%) were shared between these areas. Among the classified sequences, Thaumarchaeota were predominant in the native forest, whereas Euryarchaeota were predominant in the oil palm-cultivated area. Archaeal species diversity was 1.7 times higher in the native forest soil, according to the Simpson diversity index, and the Chao1 index showed that richness was five times higher in the native forest soil. A phylogenetic tree of unclassified Thaumarchaeota sequences showed that most of the OTUs belong to Miscellaneous Crenarchaeotic Group. Several archaeal genera involved in nutrient cycling (e.g., methanogens and ammonia oxidizers) were identified in both areas, but significant differences were found in the relative abundances of Candidatus Nitrososphaera and unclassified Soil Crenarchaeotic Group (prevalent in the native forest) and Candidatus Nitrosotalea and unclassified Terrestrial Group (prevalent in the oil palm-cultivated area). More studies are needed to culture some of these Archaea in the laboratory so that their metabolism and physiology can be studied. PMID:27006640

Abstract Andirobeira is an Amazonian tree, the seeds of which produce a commercially valuable oil that is used in folk medicine and in the cosmetic industry. Andiroba oil contains components with anti-inflammatory, cicatrizing and insect-repellant actions. However, virtually nothing is known of the safety of this oil for humans. The aim of this work was therefore to investigate the hematotoxicity, genotoxicity and mutagenicity of andiroba oil using the comet and micronucleus assays, and to assess its antioxidant properties and lipidome as a means of addressing safety issues. For the experiments, andiroba oil was administered by gavage for 14 consecutive days in nulliparous female Swiss mice randomly distributed in four groups: negative control and three doses of oil (500, 1000 and 2000 mg/kg/day). These doses were chosen based on recommendations of the OECD guideline no. 474 (1997). GC/MS was used to investigate the free fatty acid, cholesterol and triterpene content of andiroba oil in a lipidomic analysis. No clinical or behavioral alterations were observed throughout the period of treatment, and exposure to andiroba oil at the doses and conditions used here did not result in hematotoxic, genotoxic or mutagenic effects. Tests in vitro showed that oil sample 3 from southwestern of Brazilian Amazon had a high antioxidant capacity that may protect biological systems from oxidative stress, although this activity remains to be demonstrated in vivo. PMID:27192128

Increasing dryness in the Amazon region combined with forest degradation could potentially lead to critical transitions of parts of the tropical evergreen forest into seasonal forest or savanna with substantial consequences for regional as well as continental climate. In the assessment of these risks and processes involved, vegetation-climate feedbacks play a central role. In particular, the degradation of tropical forest affects cascading moisture recycling that accounts for about 10% of total South American annual precipitation. Unlike tropical dense forest with deep-rooted trees, a degraded forest experiences water deficit and decreases evapotranspiration rate during the dry season. As a result, the moisture recycling weakens, intensifying the dry season locally and downwind. This in turn affects the resilience of the remaining forested areas, which gives rise to a self-amplifying feedback - loop of forest degradation and reduced dry season precipitation. Here, we examine how perturbations of the hydrological cycle (induced by deforestation or reduced incoming moisture from the ocean) lead to cascading effects of increased dryness and reduced forest resilience. We combine a simple empirical model based on remote sensing data together with an Eulerian moisture tracking model to quantify the probability of cascading vegetation change in present day and future Amazonian rainforest.

The eastern Amazon is becoming a mosaic of land use types, including primary forest, secondary forest, degraded pastures, and productive pastures. We are investigating how this land use change affects trace gas emissions from the soils of this region. Precipitation is highly seasonal, with less than 20% of the annual precipitation falling during the 6-month dry season. Despite this seasonality, soil fluxes of CO{sub 2} vary only about 20% between the wet and dry seasons in forests (0.30 v 0.24 g m{sup {minus}2} hr{sup {minus}1}) and degraded pastures (0.14 v 0.11 g m{sup {minus}2}hr{sup {minus}1}). Forest trees and woody plants of the degraded pastures are deep rooted and remain active during the dry season. In contrast, productive pastures from which woody weeds have been removed show larger seasonal variation in CO{sub 2} fluxes, from 0.09 g m{sup {minus}2}hr{sup {minus}1} when the grasses are dormant late in the dry season to 0.21 g m{sup {minus}2}hr{sup {minus}1} early in the wet season. Seasonal patterns of fluxes of NO, N{sub 2}O, and CH{sub 4} are currently being measured, and these preliminary results will also be presented.

Andirobeira is an Amazonian tree, the seeds of which produce a commercially valuable oil that is used in folk medicine and in the cosmetic industry. Andiroba oil contains components with anti-inflammatory, cicatrizing and insect-repellant actions. However, virtually nothing is known of the safety of this oil for humans. The aim of this work was therefore to investigate the hematotoxicity, genotoxicity and mutagenicity of andiroba oil using the comet and micronucleus assays, and to assess its antioxidant properties and lipidome as a means of addressing safety issues. For the experiments, andiroba oil was administered by gavage for 14 consecutive days in nulliparous female Swiss mice randomly distributed in four groups: negative control and three doses of oil (500, 1000 and 2000 mg/kg/day). These doses were chosen based on recommendations of the OECD guideline no. 474 (1997). GC/MS was used to investigate the free fatty acid, cholesterol and triterpene content of andiroba oil in a lipidomic analysis. No clinical or behavioral alterations were observed throughout the period of treatment, and exposure to andiroba oil at the doses and conditions used here did not result in hematotoxic, genotoxic or mutagenic effects. Tests in vitro showed that oil sample 3 from southwestern of Brazilian Amazon had a high antioxidant capacity that may protect biological systems from oxidative stress, although this activity remains to be demonstrated in vivo. PMID:27192128

Land use/cover classification is one of the most important applications in remote sensing. However, mapping accurate land use/cover spatial distribution is a challenge, particularly in moist tropical regions, due to the complex biophysical environment and limitations of remote sensing data per se. This paper reviews experiments related to land use/cover classification in the Brazilian Amazon for a decade. Through comprehensive analysis of the classification results, it is concluded that spatial information inherent in remote sensing data plays an essential role in improving land use/cover classification. Incorporation of suitable textural images into multispectral bands and use of segmentation-based method are valuable ways to improve land use/cover classification, especially for high spatial resolution images. Data fusion of multi-resolution images within optical sensor data is vital for visual interpretation, but may not improve classification performance. In contrast, integration of optical and radar data did improve classification performance when the proper data fusion method was used. Of the classification algorithms available, the maximum likelihood classifier is still an important method for providing reasonably good accuracy, but nonparametric algorithms, such as classification tree analysis, has the potential to provide better results. However, they often require more time to achieve parametric optimization. Proper use of hierarchical-based methods is fundamental for developing accurate land use/cover classification, mainly from historical remotely sensed data. PMID:24353353

In Brazil, a significant reduction in deforestation rates occurred during the last decade. In spite of that fact, the average annual rates are still too high, approximately 400.000 ha/year (INPE/Prodes). The projects of emissions reduction through avoided deforestation (REED+) are an important tool to reduce deforestation rates in Brazil. Understanding the amazon forest structure, in terms of biomass stock is key to design avoided deforestation strategies. In this work, we analyze data results from aboveground biomass of 1,019.346,27 hectares in the state of Pará. It was collected data from 16,722 trees in 83 random independent plots. It was tested 4 allometric equations, for DBH > 10cm: Brown et al. (1989), Brown and Lugo (1999), Chambers et al. (2000), Higuchi et al. (1998). It revealed that the biggest carbon stock of above ground biomass is stocked on the interval at DBH between 30cm and 80cm. This biomass compartment stocks 75.70% of total biomass in Higuchi et al. (1998) equation, 75.56% of total biomass in Brown et al. (1989) equation, 78.83% of total biomass in Chambers et al. (2000) equation, and 73.22% in Brown and Lugo (1999) equation. PMID:26959317

basin, and became instead an erosional area that contributed sediments to the Amazon fluvial system. At that time, the lowland fluvial systems of southwestern Amazonia (the Purus, Jurua and Javarí basins) become isolated from the Andes by the newly formed north-flowing Ucayali system and south-east flowing Madre de Dios System. It was during the early Pliocene that the Amazon fluvial system integrated regionally and acquired its present appearance, and also when it started to drain water and sediments on a large scale to the Atlantic Ocean.

Tree growth is a biotic variable of great importance in understanding the dynamics of tree communities and may be used as a tool in studies of biological or climate modeling. Some climate models predict more recurrent climate anomalies in this century, which may alter the functioning of tropical forests with serious structural and demographic implications. The present study aimed to evaluate the profile of tree growth and litterfall production in an eastern Amazon forest, which has suffered recent climatic disturbances. We contrasted different functional groups based on wood density (stem with 0.55; 0.56-0.7; >0.7 g cm-3), light availability (crown illumination index; high illuminated crown - IIC1 until shaded crown - IIC5), and, size class (trees 10-22.5; 22.6-35; 35.1-55; 55,1-90; >90 cm dbh). Tree diameter increment was monthly measured from November 2011 to September 2013 by using dendrometer bands installed on 850 individuals from different families. Litterfall was collected in 64 circular traps, oven dried and weighed, separated into leaves, twigs, reproductive parts and miscellaneous. During the rainy season the sampled trees had the highest rates of tree diametric increment. When analyzing the data by functional groups, large trees had faster growth, but when grouped by wood density, trees with wood density up to 0.55 and between 0.56 and 0.7 g cm-3 had the fastest rates of growth. When grouped by crown illumination index, trees exposed to higher levels of light grew more in comparison to partially shaded trees. Maximum daily air temperature and precipitation were the most important environmental variables in determining the diametric increment profile of the trees. Litterfall production was estimated to be 7.1 Mg ha-1.year-1 and showed a strong seasonal pattern, with dry season production being higher than in the rainy season. Leaves formed the largest fraction of the litterfall, followed by twigs, reproductive parts, and finally miscellaneous. These

This article reviews the various models that have been used to describe the relationships between gene trees and species trees. Molecular phylogeny has focused mainly on improving models for the reconstruction of gene trees based on sequence alignments. Yet, most phylogeneticists seek to reveal the history of species. Although the histories of genes and species are tightly linked, they are seldom identical, because genes duplicate, are lost or horizontally transferred, and because alleles can coexist in populations for periods that may span several speciation events. Building models describing the relationship between gene and species trees can thus improve the reconstruction of gene trees when a species tree is known, and vice versa. Several approaches have been proposed to solve the problem in one direction or the other, but in general neither gene trees nor species trees are known. Only a few studies have attempted to jointly infer gene trees and species trees. These models account for gene duplication and loss, transfer or incomplete lineage sorting. Some of them consider several types of events together, but none exists currently that considers the full repertoire of processes that generate gene trees along the species tree. Simulations as well as empirical studies on genomic data show that combining gene tree–species tree models with models of sequence evolution improves gene tree reconstruction. In turn, these better gene trees provide a more reliable basis for studying genome evolution or reconstructing ancestral chromosomes and ancestral gene sequences. We predict that gene tree–species tree methods that can deal with genomic data sets will be instrumental to advancing our understanding of genomic evolution. PMID:25070970

Created to help students understand how plants were used for food, for medicine, and for arts and crafts among the Ojibwe (Chippewa) Indians, the game Tree-Ties combines earth and social sciences within a specific culture. The game requires mutual respect, understanding, and agreement to succeed. Sounding like the word "treaties", the title is a…

This manual provides information needed to meet the standards for pesticide applicator certification. Pests and diseases of christmas tree plantations are identified and discussed. Section one deals with weeds and woody plants and the application, formulation and effects of herbicides in controlling them. Section two discusses specific diseases…

It is shown that the generating function for tree graphs in the ''in-in'' formalism may be calculated by solving the classical equations of motion subject to certain constraints. This theorem is illustrated by application to the evolution of a single inflaton field in a Robertson-Walker background.

Presents a universal phylogenetic tree suitable for use in high school and college-level biology classrooms. Illustrates the antiquity of life and that all life is related, even if it dates back 3.5 billion years. Reflects important evolutionary relationships and provides an exciting way to learn about the history of life. (SAH)

MPI-FTW is a scalable MPI based software application that navigates a directory tree by dynamically allocating processes to navigate sub-directories found. Upon completion, MPI-FTW provides statistics on the number of directories found, files found, and time to complete. Inaddition, commands can be executed at each directory level.

Describes a procedure for starting tree cuttings from woody plants, explaining "lag time," recommending materials, and giving step-by-step instructions for rooting and planting. Points out species which are likely candidates for cuttings and provides tips for teachers for developing a unit. (JM)

Demographic changes in population continue to bring children of different cultural backgrounds to classrooms. This article provides suggestions teachers and counselors can use to bridge cultures. Using the parable of a medicine tree, it explains how no society can endure without caring for its young. (Author/JDM)

Phylogenetic trees, which are depictions of the inferred evolutionary relationships among a set of species, now permeate almost all branches of biology and are appearing in increasing numbers in biology textbooks. While few state standards explicitly require knowledge of phylogenetics, most require some knowledge of evolutionary biology, and many…

Recommends introducing students to biology using a topical focus that can offer intriguing perspectives on the discipline. Describes a biology course that uses trees as a topical focus. Presents a list of literary resources and reviews student interactions. Contains 50 references. (DDR)

The Encylopedia of Fruit and Nuts is designed as a research reference source on temperate and tropical fruit and nut crops. Strawberry tree or madrone is native to the Mediterranean region of southern Europe (Arbutus unedo L., Ericaceae) with a relict population in Ireland, as well as in North Ameri...

Designed as a text for high school students and adults, this illustrated book presents ethical concepts and teachings of Native societies throughout North America concerning the nature and possibilities of human existence. The final component of a course in self-discovery and development, the book begins with the legend of the "Sacred Tree"…

Describes hands-on science areas that focus on trees. A project on leaf pigmentation involves putting crushed leaves in a test tube with solvent acetone to dissolve pigment. In another project, students learn taxonomy by sorting and classifying leaves based on observable characteristics. Includes a language arts connection. (PVD)

Methods for teaching pupils to use their senses to explore colors, shapes, textures, and sounds of the great outdoors are described. Ideas include: (1) having children hug their own special tree; (2) looking for geometric shapes in nature; (3) taking nocturnal nature walks; (4) building a track for racing insects; and (5) collecting objects with…

A virus (AV71/99) was isolated from a green-cheeked Amazon parrot by propagation and passage in both primary embryo liver cells derived from blue and yellow macaw (Ara ararauna) embryos and chicken embryo liver cells. Electron microscopic examination of cytopathic agents derived from both types of cell cultures suggested that it was a coronavirus. This was confirmed using a pan-coronavirus reverse transcriptase polymerase chain reaction that amplified part of gene 1 that encodes the RNA-dependent RNA polymerase. The deduced sequence of 66 amino acids had 66 to 74% amino acid identity with the corresponding sequence of coronaviruses in groups 1, 2 and 3. Several other oligonucleotide primer pairs that give PCR products corresponding to genes 3, 5, N and the 3'-untranslated region of infectious bronchitis virus, turkey coronavirus and pheasant coronavirus (all in group 3) failed to do so with RNA from the parrot coronavirus. This is the first demonstration of a coronavirus in a psittacine species. PMID:16595304

The fringing floodplain along the 2600 km reach of the Amazon River in Brazil inundates up to about 80,000 km squared of flooded forests, open water and floating macrophytes. These habitats outgas significant amount of carbon dioxide and methane as a result of autochthonous and allochthonous fixation and exchanges of carbon on the floodplain and with the neighboring uplands. Based on our measurements and those of others, we have assembled sufficient data to characterize the following fluxes and transformations in a representative central Amazon floodplain lake: inputs of litterfall, dissolved organic carbon (DOC) in rainfall, DOC and particulate organic carbon (POC) in streams, DOC in groundwater seepage; exchanges of DOC and POC with the mainstem river; net primary productivity of floating macrophyes, periphyton and phytoplankton; sedimentation; carbon dioxide and methane evasion. These data are the basis for models of carbon processing and methane evasion.

Disturbance and deforestation have profound ecological and socioeconomic effects on tropical forests, but their diffuse patterns are difficult to detect and quantify at regional scales. We expanded the Carnegie forest damage detection system to show that, between 1999 and 2005, disturbance and deforestation rates throughout the Peruvian Amazon averaged 632 square kilometers per year and 645 square kilometers per year, respectively. However, only 1 to 2% occurred within natural protected areas, indigenous territories contained only 11% of the forest disturbances and 9% of the deforestation, and recent forest concessions effectively protected against clear-cutting. Although the region shows recent increases in disturbance and deforestation rates and leakage into forests surrounding concession areas, land-use policy and remoteness are serving to protect the Peruvian Amazon. PMID:17690260

This paper describes the overall experimental design for the Amazon Boundary Layer Experiment (ABLE 2B), which used data from aircraft, ground-based, and satellite platforms to characterize the chemistry and dynamics of the lower atmosphere over the Amazon Basin during wet season conditions in April-May 1987. The ABLE 2B focused on determining the spatial and temporal scales of variability in trace gases and aerosols in the lower and midtroposphere over the Amazonian rain forest during wet season conditions, and assessing the role of local-to-regional atmospheric scales of motion on determining the distribution of atmospheric chemical species and their photochemical environment. A summary of the results from the combined ABLE 2A and ABLE 2B are presented.

Replacing natural vegetation with realistic tropical crops over the Amazon region in a global Earth system model impacts vertical transport of heat and moisture, modifying the interaction between the atmospheric boundary layer and the free atmosphere. Vertical velocity is decreased over a majority of the Amazon region, shifting the ascending branch and modifying the seasonality of the Hadley circulation over the Atlantic and eastern Pacific oceans. Using a simple model that relates circulation changes to heating anomalies and generalizing the upper-atmosphere temperature response to deforestation, agreement is found between the response in the fully-coupled model and the simple solution. These changes to the large-scale dynamics significantly impact precipitation in several remote regions, namely sub-Saharan Africa, Mexico, the southwestern United States and extratropical South America, suggesting non-local climate repercussions for large-scale land use changes in the tropics are possible.

The magnitudes of CH4 emissions to the troposphere from the Amazon River floodplain and the mechanism of these emissions were investigated using the data of 94 individual flux measurements made along a 1700-km stretch of the river during July/August 1985. The overall average rate of CH4 emission from wetlands was found to be 390 mg CH4/sq m per day, with the highest emissions (590 mg CH4/sq m per day) attributed to the water surfaces covered by aquatic macrophytes. Ebullition was the dominant mechanism of emission, accounting for 85 percent of the total. Surface-water CH4 concentrations were highly supersaturated, averaging 6.4 micromolar. The annual emission of CH4 from the Amazon Basin to the troposphere, estimated from the area and the known emission rate, is about 10 CH4 Tg/yr, indicating the importance of the area in the global atmospheric CH4 cycle.

The article examines the issue of globalization, along with its contradictions and the ways in which it guides and shapes specific situations within the Amazon's present-day reality, while simultaneously engendering the uniformization of economic production and the valorization of cultural differences. The discussion explores the nuances of implementing a massified, standardized productive base that paradoxically fosters the valorization of cultural differences and favors alliances between, on the one hand, ethno-political leaders from indigenous Amazon groups and, on the other, environmentalists and other transworld actors who wield strong decision-making power. The article analyzes the indigenous movement's network of alliances and highlights the polyphony of the different political agents that come to clash with each other within this post-modern geopolitical setting. PMID:17500133

Protected areas (PAs) now shelter 54% of the remaining forests of the Brazilian Amazon and contain 56% of its forest carbon. However, the role of these PAs in reducing carbon fluxes to the atmosphere from deforestation and their associated costs are still uncertain. To fill this gap, we analyzed the effect of each of 595 Brazilian Amazon PAs on deforestation using a metric that accounts for differences in probability of deforestation in areas of pairwise comparison. We found that the three major categories of PA (indigenous land, strictly protected, and sustainable use) showed an inhibitory effect, on average, between 1997 and 2008. Of 206 PAs created after the year 1999, 115 showed increased effectiveness after their designation as protected. The recent expansion of PAs in the Brazilian Amazon was responsible for 37% of the region's total reduction in deforestation between 2004 and 2006 without provoking leakage. All PAs, if fully implemented, have the potential to avoid 8.0 +/- 2.8 Pg of carbon emissions by 2050. Effectively implementing PAs in zones under high current or future anthropogenic threat offers high payoffs for reducing carbon emissions, and as a result should receive special attention in planning investments for regional conservation. Nevertheless, this strategy demands prompt and predictable resource streams. The Amazon PA network represents a cost of US$147 +/- 53 billion (net present value) for Brazil in terms of forgone profits and investments needed for their consolidation. These costs could be partially compensated by an international climate accord that includes economic incentives for tropical countries that reduce their carbon emissions from deforestation and forest degradation. PMID:20505122

Background Reserves are the principal means to conserve forests and biodiversity, but the question of whether reserves work is still debated. In the Amazon, fires are closely linked to deforestation, and thus can be used as a proxy for reserve effectiveness in protecting forest cover. We ask whether reserves in the Brazilian Amazon provide effective protection against deforestation and consequently fires, whether that protection is because of their location or their legal status, and whether some reserve types are more effective than others. Methodology/Principal Findings Previous work has shown that most Amazonian fires occur close to roads and are more frequent in El Niño years. We quantified these relationships for reserves and unprotected areas by examining satellite-detected hot pixels regressed against road distance across the entire Brazilian Amazon and for a decade with 2 El Niño-related droughts. Deforestation fires, as measured by hot pixels, declined exponentially with increasing distance from roads in all areas. Fewer deforestation fires occurred within protected areas than outside and the difference between protected and unprotected areas was greatest near roads. Thus, reserves were especially effective at preventing these fires where they are known to be most likely to burn; but they did not provide absolute protection. Even within reserves, at a given distance from roads, there were more deforestation fires in regions with high human impact than in those with low impact. The effect of El Niño on deforestation fires was greatest outside of reserves and near roads. Indigenous reserves, limited-use reserves, and fully protected reserves all had fewer fires than outside areas and did not appear to differ in their effectiveness. Conclusions/Significance Taking time, regional factors, and climate into account, our results show that reserves are an effective tool for curbing destructive burning in the Amazon. PMID:19352423

Due to extremely poor road infrastructure and resulting difficulties in direct topographic levelling, Amazon river basin lacks a consistent topographical referential. Space based altimetric techniques appear to be the only feasible alternative to establish such a referential. Extensive processing of Topex/Poseidon satellite radar altimeter data upon continental open water bodies of the Amazon Basin over 1993-2000 period has been realised. Due to relatively poor reliability of Topex/Poseidon data at river low stage, processing focussed on maximum annual water levels. Such maximum annual water levels have been determined for more than 150 intersections between satellite ground traces and rivers, accuracy being improved by correlation analysis with continuous water level time series at closest gauging station. Results have been translated to a geoidal referential using EGM96 geoid model. Annual upper enveloppes of rivers longitudinal water profiles have been interpolated, allowing to quantify maximum annual water levels at existing gauging stations. Confrontation between satellite determined and field measured maximum water levels at these stations allowed to quantify the geoidal altitude of more than 80 stations with a decimetric accuracy (<0.5m). This method has been checked and validated through internal consistency analysis, hydrological consistency analysis and confrontation with bi-frequency GPS positionning measurement results at 22 stations. Mean difference between geoidal altitudes determined by satellite radar altimetry and bi-frequency GPS positionning for these 22 stations is +0.29 m +/- 0.63 m, GPS positionning results being lower than satellite radar altimetry ones. Till now about 30 000 km of Amazon Basin rivers over Brazil, Bolivia, Peru and Ecuador benefit from these altimetric references. This opens way for improved understanding of Amazon river dynamics and enlightens possible improvements in applying satellite radar altimetry techniques over

The last three decades, the Amazon Basin has been affected for the occupation with consequence large deforestation. The principal area deforested is located from Maranhao state to Rondonia state. This area is common called "Arc Deforestation", and representing the transition between two important Brazilian ecosystems, Amazon Forest and Savanna Region. Theses ecosystems have precious biodiversity, and it has population about 10.331.000. The objective of this work was to evaluate the impact of arc deforestation on the hydrological cycle at Amazon basin, using BRAMS (Brazilian developments on the Regional Atmospheric Modeling System) including a model of dynamic vegetation, called GEMTM (General Energy and Mass Transport Model). In this study, numerical simulations were performed with a high spatial resolution regional model that allows capture some mesoscale aspects associated to the land used, topography, coastlines and large rivers. In order to predict the impact of the arc deforestation over the hydrological cycle, it was run two model simulations, conducted over a one-year period. In the first simulation, designated "control", it was used the scenarios derived from Soares Filho (2002), for the year 2002, in governance situation. In the second simulation called "deforestation", it was used the scenarios for the 2050, derived from results of Soares-Filho with governance, too. The higher-resolution regional modeling revealed important features of the deforestation process, displaying some associated mesoscale effects that are not typically represented in similar Global Circulation Model simulations. Near coastal zones and along large rivers, deforestation resulted in reduced precipitation. However, it was predicted increased precipitation over mountainous areas, especially on mountain slopes facing river valleys. Then, these higher-resolution simulations showed that, in general, orography, coastline profile and large river distribution play important roles in

Protected areas (PAs) now shelter 54% of the remaining forests of the Brazilian Amazon and contain 56% of its forest carbon. However, the role of these PAs in reducing carbon fluxes to the atmosphere from deforestation and their associated costs are still uncertain. To fill this gap, we analyzed the effect of each of 595 Brazilian Amazon PAs on deforestation using a metric that accounts for differences in probability of deforestation in areas of pairwise comparison. We found that the three major categories of PA (indigenous land, strictly protected, and sustainable use) showed an inhibitory effect, on average, between 1997 and 2008. Of 206 PAs created after the year 1999, 115 showed increased effectiveness after their designation as protected. The recent expansion of PAs in the Brazilian Amazon was responsible for 37% of the region's total reduction in deforestation between 2004 and 2006 without provoking leakage. All PAs, if fully implemented, have the potential to avoid 8.0 ± 2.8 Pg of carbon emissions by 2050. Effectively implementing PAs in zones under high current or future anthropogenic threat offers high payoffs for reducing carbon emissions, and as a result should receive special attention in planning investments for regional conservation. Nevertheless, this strategy demands prompt and predictable resource streams. The Amazon PA network represents a cost of US$147 ± 53 billion (net present value) for Brazil in terms of forgone profits and investments needed for their consolidation. These costs could be partially compensated by an international climate accord that includes economic incentives for tropical countries that reduce their carbon emissions from deforestation and forest degradation. PMID:20505122

The foot and mouth crisis forced many British outdoor education providers to develop new options. The construction of an abseiling tree is described, which requires a living, healthy, straight tree with a trunk thick enough to remain stable under load and with few branches in the lower 15-20 meters. An abseil tree code of practice is presented.…

The Re-Think Tree is a simple framework to help individuals assess and improve their behaviors related to environmental issues. The branches of the tree in order of priority are refuse, reduce, re-use, and recycle. Roots of the tree include such things as public opinion, education, and watchdog groups. (KS)

To help urban, suburban, and rural tree owners know about air pollution's effects on trees and their tolerance and intolerance to pollutants, the USDA Forest Service has prepared this booklet. It answers the following questions about atmospheric pollution: Where does it come from? What can it do to trees? and What can we do about it? In addition,…

This manual acquaints readers with the general operations of the tree care industry. The manual covers subjects important to a tree worker and serves as a training aid for workers at the entry level as tree care professionals. Each chapter begins with a set of objectives and may include figures, tables, and photographs. Ten chapters are included:…

Referring as often as possible to traditional Hopi practices and to materials readily available on the reservation, the illustrated booklet provides information on the care and maintenance of young fruit trees. An introduction to fruit trees explains the special characteristics of new trees, e.g., grafting, planting pits, and watering. The…

I use the distinction between the nuclei and the satellites that pertain to discourse relations to introduce a compositionality criterion for discourse trees. I provide a first-order formalization of rhetorical structure trees and, on its basis, I derive an algorithm that constructs all the valid rhetorical trees that can be associated with a given discourse.

There are numerous bird species that will nest only in dead or dying trees. Current forestry practices include clearing forests of these snags, or dead trees. This practice is driving many species out of the forests. An illustrated example of bird succession in and on a tree is given. (MA)

Understanding the mechanisms generating species distributions remains a challenge, especially in hyperdiverse tropical forests. We evaluated the role of rainfall variation, soil gradients and herbivory on seedling mortality, and how variation in seedling performance along these gradients contributes to habitat specialisation. In a 4-year experiment, replicated at the two extremes of the Amazon basin, we reciprocally transplanted 4638 tree seedlings of 41 habitat-specialist species from seven phylogenetic lineages among the three most important forest habitats of lowland Amazonia. Rainfall variation, flooding and soil gradients strongly influenced seedling mortality, whereas herbivory had negligible impact. Seedling mortality varied strongly among habitats, consistent with predictions for habitat specialists in most lineages. This suggests that seedling performance is a primary determinant of the habitat associations of adult trees across Amazonia. It further suggests that tree diversity, currently mostly harboured in terra firme forests, may be strongly impacted by the predicted climate changes in Amazonia. PMID:27600657

Changes in the natural behavior, expressing adaptation to cohabitation in a community, were observed in the slave-making ants P. rufescens and the slave-species F. fusca and F. cinerea. After a few raids, the initially undirected arousal evoked in the slaves by the amazons' raids, begins to acquire attributes appropriate to the situation, but completely different in both studied slave-species. F. cinerea picks up the pupae abandoned on the nest by the slave-making ants and eventually begins to wrench them away from the amazons arriving with prey. F. fusca, whose nests have openings so narrow that it prevents the mass entry of amazons with prey, begin to enlarge those openings shortly after the amazons return. After a certain number of raids, F. fusca begin to enlarge the openings immediately after the departure of the amazons for the slave-raid. The amazons, on their side, adjust soon to the specific behavior of the given slave-species; in nests with F. fusca, they make use of enlarged openings, carrying their prey through them into the nest; when F. cinerea are the slaves, most of the amazons begin to drop the pupae on the nest, and later even surrender the prey to the slaves who meet them. It is supposed that in all three species, under the influence of specific conditions there occurs the process of learning of new forms of behavior. PMID:749551

The prevailing wet climate in the western Amazon is not favorable to the natural occurrence of fires. Nevertheless, the current process of clearing of humid forests for agriculture and cattle ranching has increased the vulnerability of the region to the spread of fires. Using meteorological stations precipitation and the Moderate Resolution Spectroradiometer (MODIS) Active-Fires (AF) during 2000-2009, we show that fire anomalies vary closely with July-August-September (JAS) precipitation variability as measured by the Standardized Precipitation Index (SPI). The precipitation variability is, in turn, greatly determined by sea surface temperature (SST) anomalies in the North Tropical Atlantic (NTA). We develop a linear regression model to relate local fire activity to an index of the NTA-SST. By using seasonal forecasts of SST from a coupled model, we are able to predict anomalous JAS fire activity as early as April. We applied the method to predict the severe 2010 JAS season, which indicated strongly positive seasonal fire anomalies within the 95% prediction confidence intervals in most western Amazon. The spatial distribution of predicted SPI was also in accordance with observed precipitation anomalies. This three months lead time precipitation and fire prediction product in the western Amazon could help local decision makers to establish an early warning systems or other appropriate course of action before the fire season begins.

Ballast water exchange (BWE) is the most efficient measure to control the invasion of exotic species from ships. This procedure is being used for merchant ships in national and international voyages. The ballast water (BW) salinity is the main parameter to evaluate the efficacy of the mid-ocean ballast water exchange. The vessels must report to the Port State Control (PSC), via ballast water report (BWR), where and how the mid-ocean BWE was performed. This measure allows the PSC to analyze this information before the ship arrives at the port, and to decide whether or not it should berth. Ship BW reporting forms were collected from the Captaincy of Santana and some ships were visited near the Port of Santana, located in Macapá (Amazon River), to evaluate the BW quality onboard. We evaluated data submitted in these BWR forms and concluded that the BWE efficacy might be compromised, because data contained in these BWR indicate that some ships did not change their BW. We found mistakes in filling the BWR forms and lack of information. Moreover, these ships had discharged BW with high level of salinity, Escherichia coli and total coliforms into the Amazon River. We concluded that the authorities of the Amazon Region need to develop more efficient proceedings to evaluate the ballast water reporting forms and BW quality, as there is potential risk of future invasion of exotic species in Brazilian ports. PMID:24928458

Three aspects of the physical geographic environment of the Amazon Basin are considered: (1) deforestation and reforestation, (2) floodplain dynamics, and (3) fluvial geomorphology. Three independent projects are coupled in this experiment to improve the in-place research and to ensure that the Shuttle Imaging Radar-B (SIR-B) experiment stands on a secure base of ongoing work. Major benefits to be obtained center on: (1) areal and locational information, (2) data from various depression angles, and (3) digital radar signatures. Analysis will be conducted for selected sites to define how well SIR-B data can be used for: (1) definition of extent and location of deforestation in a tropical moist forest, (2) definition and quantification of the nature of the vegetation and edaphic conditions on the (floodplain) of the Amazon River, and (3) quantification of the accuracy with which the geometry and channel shifting of the Amazon River may be mapped using SIR-B imagery in conjunction with other remote sensing data.

Flood events have impacts on the exchange of energy, water and trace gases between land and atmosphere, hence potentially affecting the climate. The Amazon River basin is the world's largest river basin. Seasonal floods occur in the Amazon Basin each year. The basin being characterized by flat gradients, backwater effects are evident in the river dynamics. This factor, together with large uncertainties in river hydraulic geometry, surface topography and other datasets, contribute to difficulties in simulating flooding processes over this basin. We have developed a large-scale inundation scheme in the framework of the Model for Scale Adaptive River Transport (MOSART) river routing model. Both the kinematic wave and the diffusion wave routing methods are implemented in the model. A new process-based algorithm is designed to represent river channel - floodplain interactions. Uncertainties in the input datasets are partly addressed through model calibration. We will present the comparison of simulated results against satellite and in situ observations and analysis to understand factors that influence inundation processes in the Amazon Basin.

The present study characterises the commercial fisheries of the basin of the Xingu River, a major tributary of the Amazon River, between the towns of Gurupá (at the mouth of the Amazon) and São Félix do Xingu. Between April, 2012, and March, 2014, a total of 23,939 fishing trips were recorded, yielding a total production of 1,484 tons of fish, harvested by almost three thousand fishers. The analysis of the catches emphasizes the small-scale and artisanal nature of the region's fisheries, with emphasis on the contribution of the motorised canoes powered by "long-tail" outboard motors. Larger motorboats operate only at the mouth of the Xingu and on the Amazon. Peacock bass (Cichla spp.), croakers (Plagioscion spp.), pacu (a group containing numerous serrasalmid species), aracu (various anostomids), and curimatã (Prochilodus nigricans) together contributed more than 60% of the total catch. Mean catch per unit effort was 18 kg/fisher-1.day-1, which varied among fishing methods (type of vessel and fishing equipment used), river sections, and time of the year. In most cases, yields varied little between years (2012 and 2013). The technical database provided by this study constitutes an important resource for the regulation of the region's fisheries, as well as for the evaluation of future changes resulting from the construction of the Belo Monte dam on the Xingu River. PMID:26691085

Large rivers create major gaps in reef distribution along tropical shelves. The Amazon River represents 20% of the global riverine discharge to the ocean, generating up to a 1.3 × 10(6)-km(2) plume, and extensive muddy bottoms in the equatorial margin of South America. As a result, a wide area of the tropical North Atlantic is heavily affected in terms of salinity, pH, light penetration, and sedimentation. Such unfavorable conditions were thought to imprint a major gap in Western Atlantic reefs. We present an extensive carbonate system off the Amazon mouth, underneath the river plume. Significant carbonate sedimentation occurred during lowstand sea level, and still occurs in the outer shelf, resulting in complex hard-bottom topography. A permanent near-bottom wedge of ocean water, together with the seasonal nature of the plume's eastward retroflection, conditions the existence of this extensive (~9500 km(2)) hard-bottom mosaic. The Amazon reefs transition from accretive to erosional structures and encompass extensive rhodolith beds. Carbonate structures function as a connectivity corridor for wide depth-ranging reef-associated species, being heavily colonized by large sponges and other structure-forming filter feeders that dwell under low light and high levels of particulates. The oxycline between the plume and subplume is associated with chemoautotrophic and anaerobic microbial metabolisms. The system described here provides several insights about the responses of tropical reefs to suboptimal and marginal reef-building conditions, which are accelerating worldwide due to global changes. PMID:27152336

The Amazon and Orinoco Rivers are massive transcontinental conveyance systems for suspended sediment. They derive about 90% of their sediment from the Andes that support their western headwaters, transport it for thousands of kilometers across the breadth of the continent and deposit it in the coastal zones of the Atlantic. At their points of maximum suspended-sediment discharge, the Amazon transports an average of 1100-1300 ?? 106 tons per year and the Orinoco transports about 150 ?? 106 tons per year. Relations of sediment discharge to water discharge are complicated by unusual patterns of seasonal storage and remobilization, increased storage and reduced transport of sediment in the middle Orinoco during periods of peak water discharge, and storage of suspended sediment in the lower Amazon during rising discharge and resuspension during falling discharge. Spatial distributions of suspended sediment in cross-sections of both rivers are typically heterogeneous, not only in the vertical sense but also in the lateral. The cross-channel mixing of tributary inputs into the mainstem waters is a slow process that requires several hundred kilometers of downriver transport to complete. Considerable fine-grained sediment is exchanged between rivers and floodplains by the combination of overbank deposition and bank erosion. ?? 1994.

The Upper and middle Amazon Fan has grown in a cyclic fashion. An individual deposition cycle consists of (1) a widespread basal, acoustically transparent seismic unit (interpreted as debris-flow deposits) that fills and levels preexisting topographic lows, and (2) a levee complex built of overlapping channel-levee systems. Two and possibly three cycles have been identified within the Amazon Fan. The levee complex beneath one debris flow originated from a different submarine canyon than did the levee complex above the debris flow, suggesting that these levee complexes formed during different sea level lowstands. Calculations based on present sediment discharge of the Amazon River suggest that an entire levee complex can form within the time span of a single glacial stage, such as the Wisconsin; however, the levee complex probably could not have formed during the relatively short time interval when sea level rose rapidly at the end of a glacial stage. The basal seismic units (debris-flow deposits) may have been deposited at any time during sea level fluctuations. Although seismic evidence suggests that this cyclic sedimentation pattern may be related to glacio-eustatic sea level variations, cyclic fan growth may be attributed to other processes as well. For example, a bottom-simulating reflector (BSR) observed within the upper fan appears to be a gas hydrate. Migration of the hydrate phase boundary during sea level fluctuations and diapiric activity may be mechanisms for initiating widespread debris flows. 10 figs.

Measurements of carbon monoxide (CO) were made over the Amazon Basin of Brazil during the 1987 wet season as part of the NASA Global Tropospheric Experiment/Amazon Boundary Layer Experiment (ABLE 2B). The distribution of CO over the altitude range sampled (0.15-4.5 km) was influenced by surface emissions from biological sources, long-range transport of pollutants from northern hemisphere sources, and by transport processes associated with local convective mixing. Surface sources are indicated by a qualitative interpretation of the typical pattern of decreasing concentrations with increasing altitude and increasing concentrations of CO at 0.15-km altitude during a transect from the Atlantic coast to the central basin. Atmospheric convective activity produced irregular patterns of variability at time scales of less than 1 hour over a localized area. The disruption of mixed layer growth and decay processes has a particularly important influence on CO concentrations in the daytime lower troposphere. Intrusions of northern hemisphere air into the central Amazon resulted in increased CO concentrations in the lower and midtroposphere. The correlation of CO with O{sub 3} was positive under conditions interpreted as being influenced by northern hemisphere air, and negative during all other meteorological conditions experienced in ABLE 2B.

The role of the Amazon Basin as a global center of action for deep convection is quantified in the context of the planet's heat balance. Mesoscale heat and moisture budgets are presented for three synoptic-scale coastal originating systems (COS) over the Amazon Basin during the 1987 wet season. The budgets are obtained from volumetric analysis of mesoscale rawinsonde data from the April-May 1987 Amazon Boundary Layer Experiment (ABLE-2B). Classification of cloud and rainfall components is based on data from Portable Automated Mesonet (PAM) towers, GOES images, and radar. Satellite measurements of the total active cloud area, coupled with the mesoscale budge calculations, are used to determine the system-wide vertical transport of heat as a function of the COS life cycle. Maximum heat transport occurs in the COS mature stage when the system has its maximum spatial extent. The instantaneous heat transport for the 300-100 mb layer in a mature COS equals nearly 20% of the theoretical heat export requirements for the equatorial trough zone. A little more than half of the system-wide transport occurs in the dynamically active anvil cloud.

Over the past 10 years the Amazon region experienced two major drought events, which had large impacts on vegetation and rivers, affecting directly the transport, fishing, agriculture and health. These events were characterized by large changes in precipitation patterns over the region in the dry wet season. Aiming to analyze and identify anomalies related to the 2005 and 2010 drought, as well as the effects of larger-scale disturbances such as El Niño, we used reanalysis datasets from CFSR/NCEP and MERRA/NASA. Overall the results show that the droughts don't show a very clear signal in datasets reanalyses. Only drought events related to El Niño are well identified in the data. For the 2005 event, the reanalysis move precipitation anomalies for the regions where they are not observed in observational data. The case os 2010 presents the same charateristic, with displacement of the anomalies, and underestimating the observed effects. In the general context of the results, it was observed that there is a direct relationship between the vertical motion in the Atlantic and the precipitation anomalies over the Amazon. The drop in rates of precipitation over the Amazon and the possible increase of the flow in low levels in cases of drought affected directly the precipitation over the La Plata Basin. Thus, even the drought events not being well represented in datasets of reanalysis, it was possible to observe their effects on local and remote almost all South America.

The biodiversity of the Amazon forest is undoubtedly rich; hence there is considerable variety of plant fibers regarding their morphological, chemical and structural properties. The legal exploration of the Brazilian Amazon is based on sustainable management techniques, but the generation of a relevant amount of plant wastes still cant be avoided. The correct destination of such materials is a challenge that Brazilian companies have to face. In this context, the National Council of Science and Technology (CNPq) promoted the creation of investigation nets on sustainability of Brazilian agribusiness. The Brazilian Net on Lignocellulosic Composites and Nanocomposites was then created, with partnership between several national and international research institutions. Until the moment, the results showed that Amazon plant fibers that are discarded as residues have great potential to nanofiber production. Nanopapers with considerable high mechanical and physical strength, proper opacity and great crystalline index were produced by using a clean and simple mechanical method. Those materials are candidates to several uses such as packaging, substrates transparent conductive films, gas barrier films, solar cells and e-papers.

The research program Amazalert was based on information delivered by the IPCC through its 2007 report, which indicates forest degradation processes in the Amazonian region as a consequence of anthropogenic actions. Such processes affecting the structural and functional characteristics of ecosystems would harm environmental services that guarantee, for example, the regulation of climate and the provision of fresh water. A survey was organized, through a multidisciplinary perspective, on the main policies and programs that can affect forest cover in the Amazon. These rules and norms seek to regulate societal actions by defining a developmental model for the region. Although deforestation rates in the Brazilian Amazon have decreased significantly since 2004, some locations maintain high levels of deforestation. In 2013, for example, the municipalities of Monte Alegre, Óbidos, Alenquer, Oriximiná, Curuá and Almeirin, in the northern region of the state of Para, showed the highest rates of deforestation in the Amazon. Managers and stakeholders within these areas are being interviewed to provide insights on how policies are interpreted and applied locally. There is an understanding delay between discourses normalized by federal governmental institutions and claims of local societies. The possible lack of clarity in official discourses added to the absence of a local communicative dynamics cause the phenomenon of incomplete information. Conflicts often occur in local institutional arenas resulting in violence and complex social and historical dissonances, enhanced by other public policies idealized in different temporal and spatial conditions.

PoInTree (Polar and Interactive Tree) is an application that allows to build, visualize and customize phylogenetic trees in a polar interactive and highly flexible view. It takes as input a FASTA file or multiple alignment formats. Phylogenetic tree calculation is based on a sequence distance method and utilizes the Neighbor Joining (NJ) algorithm. It also allows displaying precalculated trees of the major protein families based on Pfam classification. In PoInTree, nodes can be dynamically opened and closed and distances between genes are graphically represented. Tree root can be centered on a selected leaf. Text search mechanism, color-coding and labeling display are integrated. The visualizer can be connected to an Oracle database containing information on sequences and other biological data, helping to guide their interpretation within a given protein family across multiple species. The application is written in Borland Delphi and based on VCL Teechart Pro 6 graphical component (Steema software). PMID:16144524

We present a method to map tree structures to colors from the Hue-Chroma-Luminance color model, which is known for its well balanced perceptual properties. The Tree Colors method can be tuned with several parameters, whose effect on the resulting color schemes is discussed in detail. We provide a free and open source implementation with sensible parameter defaults. Categorical data are very common in statistical graphics, and often these categories form a classification tree. We evaluate applying Tree Colors to tree structured data with a survey on a large group of users from a national statistical institute. Our user study suggests that Tree Colors are useful, not only for improving node-link diagrams, but also for unveiling tree structure in non-hierarchical visualizations. PMID:26356921

Palm swamp ecosystems are widespread in the Amazon basin, forming where seasonal flooding is moderate and surface inundation persists. Recent studies suggest that palm swamps have a disproportional role on tropical biogeochemistry: the combination of persistently saturated soils, warm temperatures, and low oxygen soils can support significant land-atmosphere methane flux. Potential impacts of climate change on these ecosystems include changes in temperature and precipitation regimes that influence primary productivity and flood extent significantly, potentially reversing net land-atmosphere carbon exchanges regionally. Data acquired from Earth-orbiting satellites provides the opportunity to characterize vegetation structure and monitor surface inundation independently of cloud cover. Building on efforts under our NASA MEaSUREs project for assembly of a global-scale Earth System Data Record (ESDR) of inundated wetlands, we develop and evaluate a systematic approach to map the distribution and composition of palm swamps in the upper Amazon using data sets from JAXA’s Advanced Land Observing Satellite (ALOS) Phased Array L-Band SAR (PALSAR). Our input dataset consists of HH backscatter images acquired in 2007 and 2009. Ground measurements for training were obtained from a study site near Loreto, Peru (4.43S 75.34W) containing the palm species Mauritia flexuosa. The ALOS PALSAR images are first averaged temporally and spatially. We then develop ancillary data layers of flood extent, distance from open water, and SAR image texture. The PALSAR data and derived ancillary layers are combined with MODIS Vegetation Indices and SRTM elevation and input in a classification framework. Since palm swamps are found in persistently flooded areas, we evaluate the potential of identifying and mapping these ecosystems using multi-temporal SAR-based flood extent maps. We conclude by comparing the performance between a decision-tree supervised vs. unsupervised approach and by

Many tropical forest tree species have broad geographic ranges, and fossil records indicate that population disjunctions in some species were established millions of years ago. Here we relate biogeographic history to patterns of population differentiation, mutational and demographic processes in the widespread rainforest tree Symphonia globulifera using ribosomal (ITS) and chloroplast DNA sequences and nuclear microsatellite (nSSR) loci. Fossil records document sweepstakes dispersal origins of Neotropical S. globulifera populations from Africa during the Miocene. Despite historical long-distance gene flow, nSSR differentiation across 13 populations from Costa Rica, Panama, Ecuador (east and west of Andes) and French Guiana was pronounced (F(ST)= 0.14, R(ST)= 0.39, P < 0.001) and allele-size mutations contributed significantly (R(ST) > F(ST)) to the divergences between cis- and trans-Andean populations. Both DNA sequence and nSSR data reflect contrasting demographic histories in lower Mesoamerica and Amazonia. Amazon populations show weak phylogeographic structure and deviation from drift-mutation equilibrium indicating recent population expansion. In Mesoamerica, genetic drift was strong and contributed to marked differentiation among populations. The genetic structure of S. globulifera contains fingerprints of drift-dispersal processes and phylogeographic footprints of geological uplifts and sweepstakes dispersal. PMID:18764917

Toxoplasma gondii is an important pathogen in aquatic mammals and its presence in these animals may indicate the water contamination of aquatic environment by oocysts. Serum samples from 95 free-living Amazon River dolphins (Inia geoffrensis) from the Mamirauá Sustainable Development Reserve (RDSM), Tefé, Amazonas, Central Amazon, Brazil were tested for T. gondii antibodies using the modified agglutination test (MAT). Antibodies (MAT ≥ 25) to T. gondii were found in 82 (86.3%) dolphins with titers of 1:25 in 24, 1:50 in 56, and 1:500 in 2. Results suggest a high level contamination of the aquatic environment of the home range of these animals. PMID:21764516

Forests are major components of the global carbon cycle, providing substantial feedback to atmospheric greenhouse gas concentrations. Our ability to understand and predict changes in the forest carbon cycle--particularly net primary productivity and carbon storage--increasingly relies on models that represent biological processes across several scales of biological organization, from tree leaves to forest stands. Yet, despite advances in our understanding of productivity at the scales of leaves and stands, no consensus exists about the nature of productivity at the scale of the individual tree, in part because we lack a broad empirical assessment of whether rates of absolute tree mass growth (and thus carbon accumulation) decrease, remain constant, or increase as trees increase in size and age. Here we present a global analysis of 403 tropical and temperate tree species, showing that for most species mass growth rate increases continuously with tree size. Thus, large, old trees do not act simply as senescent carbon reservoirs but actively fix large amounts of carbon compared to smaller trees; at the extreme, a single big tree can add the same amount of carbon to the forest within a year as is contained in an entire mid-sized tree. The apparent paradoxes of individual tree growth increasing with tree size despite declining leaf-level and stand-level productivity can be explained, respectively, by increases in a tree's total leaf area that outpace declines in productivity per unit of leaf area and, among other factors, age-related reductions in population density. Our results resolve conflicting assumptions about the nature of tree growth, inform efforts to undertand and model forest carbon dynamics, and have additional implications for theories of resource allocation and plant senescence. PMID:24429523

Forests are major components of the global carbon cycle, providing substantial feedback to atmospheric greenhouse gas concentrations. Our ability to understand and predict changes in the forest carbon cycle--particularly net primary productivity and carbon storage--increasingly relies on models that represent biological processes across several scales of biological organization, from tree leaves to forest stands. Yet, despite advances in our understanding of productivity at the scales of leaves and stands, no consensus exists about the nature of productivity at the scale of the individual tree, in part because we lack a broad empirical assessment of whether rates of absolute tree mass growth (and thus carbon accumulation) decrease, remain constant, or increase as trees increase in size and age. Here we present a global analysis of 403 tropical and temperate tree species, showing that for most species mass growth rate increases continuously with tree size. Thus, large, old trees do not act simply as senescent carbon reservoirs but actively fix large amounts of carbon compared to smaller trees; at the extreme, a single big tree can add the same amount of carbon to the forest within a year as is contained in an entire mid-sized tree. The apparent paradoxes of individual tree growth increasing with tree size despite declining leaf-level and stand-level productivity can be explained, respectively, by increases in a tree's total leaf area that outpace declines in productivity per unit of leaf area and, among other factors, age-related reductions in population density. Our results resolve conflicting assumptions about the nature of tree growth, inform efforts to undertand and model forest carbon dynamics, and have additional implications for theories of resource allocation and plant senescence.

This article discusses women's land rights in the context of the findings of the paper, "Women's Land Rights in the Transition to Individualized Ownership: Implications for Tree Resource Management in Western Ghana." The study showed that customary land tenure institutions have evolved toward individualized systems, which provide incentives to invest in tree planting. In effect, individualization of land tenure had strengthened women's land rights through inter vivos gifts. However, transferring of land ownership to women is unlikely to raise productivity if access to and use of other inputs remains unequal. This suggests that attempts to equalize land rights of men and women are unlikely to lead to gender equity and improved efficiency and productivity of women farmers unless other constraints faced by women are also addressed. The article also documents comments, suggestions, and recommendations in response to the summary of the paper. In addition, the different practices of guaranteeing land ownership for women in some countries of Africa are presented. PMID:12295514

The fragmentation of production across countries has become an important feature of the globalization in recent decades and is often conceptualized by the term "global value chains" (GVCs). When empirically investigating the GVCs, previous studies are mainly interested in knowing how global the GVCs are rather than how the GVCs look like. From a complex networks perspective, we use the World Input-Output Database (WIOD) to study the evolution of the global production system. We find that the industry-level GVCs are indeed not chain-like but are better characterized by the tree topology. Hence, we compute the global value trees (GVTs) for all the industries available in the WIOD. Moreover, we compute an industry importance measure based on the GVTs and compare it with other network centrality measures. Finally, we discuss some future applications of the GVTs. PMID:25978067

The fragmentation of production across countries has become an important feature of the globalization in recent decades and is often conceptualized by the term “global value chains” (GVCs). When empirically investigating the GVCs, previous studies are mainly interested in knowing how global the GVCs are rather than how the GVCs look like. From a complex networks perspective, we use the World Input-Output Database (WIOD) to study the evolution of the global production system. We find that the industry-level GVCs are indeed not chain-like but are better characterized by the tree topology. Hence, we compute the global value trees (GVTs) for all the industries available in the WIOD. Moreover, we compute an industry importance measure based on the GVTs and compare it with other network centrality measures. Finally, we discuss some future applications of the GVTs. PMID:25978067

We discuss the geometry of trees endowed with a causal structure using the conventional framework of equilibrium statistical mechanics. We show how this ensemble is related to popular growing network models. In particular we demonstrate that on a class of afine attachment kernels the two models are identical but they can differ substantially for other choice of weights. We show that causal trees exhibit condensation even for asymptotically linear kernels. We derive general formulae describing the degree distribution, the ancestor--descendant correlation and the probability that a randomly chosen node lives at a given geodesic distance from the root. It is shown that the Hausdorff dimension dH of the causal networks is generically infinite.

High-sinuosity submarine fan channels on the Amazon Fan were first observed using long-range (GLORIA) side-scan sonar in 1982 and mapped in greater detail using multibeam sonar in 1984. These data have provided important insights into the nature and evolution of submarine channel systems. Subsequent studies on the Amazon Fan have focused on avulsion patterns, sedimentation patterns, fan growth and the climate record contained in fan sediments, and there has been relatively little additional work on the details of sinuous channel morphology. Channels on the Amazon Fan have been imaged by multibeam sonar on several occasions since 1984 during focused studies, regional mapping and ship transit. These multibeam data are being compiled and studied to better characterize these iconic channels. One observation of particular interest is that, on the Amazon Fan, channel-wall slumps appear to be more common than previously thought. Drilling of a cut-off meander during ODP Leg 155 on the Amazon Fan showed the presence of slumped material deeper in the channel suggesting that failure of the channel wall was in part responsible for the abandonment and filling of that meander loop. The failure also apparently created a sandy debris flow with clasts of fine-grained levee material transported in a sandy matrix. This sandy debris flow may have been able to flow along the channel and deposit at the seaward end where similar sediments can be found. Disturbed zones now visible on the inner walls of channels at several other places along the channels suggest that these kinds of inner-wall slumps may play important roles in channel evolution and fan growth. Channel-blocking slumps can isolate channel loops which can then fill with sandy sediments, and avulsions are likely if this kind of slump fills the channel. The failure of channel walls can also lead to new channel segments that tend to straighten the channel. Dramatic changes to the shape of the channel can likely lead to large and

Low salinity plumes of Amazon and Orinoco sourced water have previously been detected around the island of Barbados. Barbados corals may therefore have the potential to record salinity anomalies governed by natural, climate-related, and anthropogenic changes in the Amazon and Orinoco Basin watersheds beyond the recent historic record. In order to determine whether Barbados corals record salinity variations associated with local or Amazon/Orinoco sourced signals, multiple specimens of Montastraea sp. and Siderastrea sp. coral skeletons were analyzed for stable C and O isotope and Sr/Ca variations. Corals were collected from the northwest, central-west, and southwest regions of the island to determine degree of salinity signal heterogeneity over a 5-6 year period at approximately monthly resolution. Four separate published paleotemperature equations were used to assess the importance of temperature on stable oxygen isotope composition. In situ temperature measurements obtained from NOAA show an annual sea surface temperature (SST) cycle of approximately 4 degrees Celsius off Barbados. If governed solely by SST, stable isotope data from all 8 corals in this study indicate a significantly greater annual temperature range of approximately 6 degrees Celsius. This suggests that salinity related fluctuations in oxygen isotopic composition of water are an important influence on the geochemistry of Barbados corals. Some regional differences in geochemical composition of corals were apparent. Corals from the southwest of Barbados showed the clearest sub-annual isotope signal, better correlations with mean annual SST measurements, and lowest mean salinity of the regions. Corals from the central-west and northwest showed distinctly higher mean, but more variable, salinity than corals from the south. Stable carbon isotope data from southwest corals also best potentially reflect the Suess Effect. Montastraea sp. corals generally show a higher paleotemperature offset from in situ

Measurements of size-resolved cloud condensation nucleai (CCN) spectra were performed at the T3 site of the Green Ocean Amazon (GoAmazon) field project located near Manacapuru, Brazil during 2014. The T3 site is a receptor site for both polluted urban down-wind (Manaus, BR a city of several million 70 km up wind) and background (Amazon rainforest) air-masses and can provide a contrast between clean and polluted conditions. Particle hygroscopicity (kappa) and mixing state were calculated from the particle activation spectrum measured by size selecting aerosols and exposing them to a wide range of supersaturation in the CCN counter (Droplet Measurement Technologies Continuous-Flow Streamwise Thermal Gradient CCN Chamber). The supersaturation was varied between 0.07 and 1.1% by changing a combination of both total flow rate and temperature gradient in the CCN counter. Measured spectra were examined for air masses with different level of influence from Manaus plume. Particle hygroscopicity generally peaked near noon local time which was broadly consistent with the trend in aerosol sulfate. The average kappa values during the first intensive operation period were 0.14±0.05, 0.14±0.04 and 0.16±0.06 for 75, 112 and 171 nm particles respectively. Evaluation of particle hygroscopicity and dispersion (mixing state) will be presented with respect to size and level of pollution.

This paper outlines the overall project for development and installation of a low-profile, caisson-installed subsea Christmas tree. After various design studies and laboratory and field tests of key components, a system for installation inside a 30-in. conductor was ordered in July 1978 from Cameron Iron Works Inc. The system is designed to have all critical-pressure-containing components below the mudline and, with the reduced profile (height) above seabed, provides for improved safety of satellite underwater wells from damage by anchors, trawl boards, and even icebergs. In addition to the innovative nature of the tree design, the completion includes improved 3 1/2-in. through flowline (TFL) pumpdown completion equipment with deep set safety valves and a dual detachable packer head for simplified workover capability. The all-hydraulic control system incorporates a new design of sequencing valve for both Christmas tree control and remote flowline connection. A semisubmersible drilling rig was used to initiate the first end flowline connection at the wellhead for subsequent tie-in to the prelaid, surface-towed, all-welded subsea pipeline bundle.

At the heart of the Tree City USA program are four basic requirements: The community must have the following: (1) a tree board or department; (2) an annual community forestry program with financial provisions for trees and tree care; (3) an annual Arbor Day proclamation and observance; and (4) a tree ordinance. Sections of a model tree ordinance…

Cacao (Theobroma cacao L.) is indigenous to the Amazon region of South America. The Peruvian Amazon harbors a large number of diverse cacao populations. Since the 1930s, several numbers of populations have been collected from the Peruvian Amazon and maintained as ex situ germplasm repositories in ...

Phylogenetic analysis has to overcome the grant challenge of inferring accurate species trees from evolutionary histories of gene families (gene trees) that are discordant with the species tree along whose branches they have evolved. Two well studied approaches to cope with this challenge are to solve either biologically informed gene tree parsimony (GTP) problems under gene duplication, gene loss, and deep coalescence, or the classic RF supertree problem that does not rely on any biological model. Despite the potential of these problems to infer credible species trees, they are NP-hard. Therefore, these problems are addressed by heuristics that typically lack any provable accuracy and precision. We describe fast dynamic programming algorithms that solve the GTP problems and the RF supertree problem exactly, and demonstrate that our algorithms can solve instances with data sets consisting of as many as 22 taxa. Extensions of our algorithms can also report the number of all optimal species trees, as well as the trees themselves. To better asses the quality of the resulting species trees that best fit the given gene trees, we also compute the worst case species trees, their numbers, and optimization score for each of the computational problems. Finally, we demonstrate the performance of our exact algorithms using empirical and simulated data sets, and analyze the quality of heuristic solutions for the studied problems by contrasting them with our exact solutions. PMID:24131054

Forests are major components of the global carbon cycle, providing substantial feedback to atmospheric greenhouse gas concentrations. Our ability to understand and predict changes in the forest carbon cycle—particularly net primary productivity and carbon storage—increasingly relies on models that represent biological processes across several scales of biological organization, from tree leaves to forest stands. Yet, despite advances in our understanding of productivity at the scales of leaves and stands, no consensus exists about the nature of productivity at the scale of the individual tree, in part because we lack a broad empirical assessment of whether rates of absolute tree mass growth (and thus carbon accumulation) decrease, remain constant, or increase as trees increase in size and age. Here we present a global analysis of 403 tropical and temperate tree species, showing that for most species mass growth rate increases continuously with tree size. Thus, large, old trees do not act simply as senescent carbon reservoirs but actively fix large amounts of carbon compared to smaller trees; at the extreme, a single big tree can add the same amount of carbon to the forest within a year as is contained in an entire mid-sized tree. The apparent paradoxes of individual tree growth increasing with tree size despite declining leaf-level and stand-level productivity can be explained, respectively, by increases in a tree’s total leaf area that outpace declines in productivity per unit of leaf area and, among other factors, age-related reductions in population density. Our results resolve conflicting assumptions about the nature of tree growth, inform efforts to understand and model forest carbon dynamics, and have additional implications for theories of resource allocation and plant senescence.

The JERS-1 Amazon Multi-season Mapping Study (JAMMS), part of the Global Rain Forest Mapping (GRFM) project led by the National Space Development Agency of Japan (NASDA), had an ambitious agenda to completely map the Amazon River floodpain (and surrounding areas) twice at high resolution.

The background purposes, organization, and results of the first conference on children and youth in the Amazon region of Ecuador are described. Special considerations of the Amazon region are reviewed, particularly the exchange of perspectives across cultures and generations. Concludes with subsequent developments of a national environmental…

The Amazon Region natural resources were studied in two ways and compared. A LANDSAT scene and its attributes were selected, and a maximum likelihood classification was made. The scene was atmospherically corrected, taking into account Amazonic peculiarities revealed by (ground truth) of the same area, and the subsequent classification. Comparison shows that the classification improves with the atmospherically corrected images.

Recent studies indicate that liana abundancy in the Amazon is increasing during the last decades. The dominant underlying mechanism of this liana proliferation is currently unknown. However, several hypothesis have been proposed to answer this phenomenon among which one ascribes lianas, in comparison to trees, being able to adapt better to increased drought conditions resulting from climate change. Moreover, some studies indicate lianas having a deeper root system compared to tropical trees, which would allow them to tap water from deeper soil layers and thus increases their belowground competitiveness. In order to test this hypothesis, water stable isotopes (δ2H and δ18O) were measured in precipitation, bulk soil (at different depths), stream, and xylem water from lianas and trees. This was done in two catchments with different soil texture (sand and clay) in the close vicinity of the Guyana flux tower at Paracou (French Guyana) during October 2015. According to recent studies using water stable isotopes (δ2H and δ18O) have described an ecohydrological separation of water. A mobile soil water compartment, compounded by stream and precipitation waters (or LMWL); and a low mobility or static water compartment mainly used by plants (i.e. xylem water) indicated as the "two water world hypothesis", suggesting that vegetation is using water that is not contributing to stream water. Based on this concept, we further characterized all isotopic data by estimating the precipitation offset (Pp-offset) which represents the distance between the LMWL and xylem δ2H and δ18O signature. Our results show that in both catchments, lianas and trees use different sources of water, with lianas tapping water with a significant heavier isotope signature (i.e. shallower water sources) compared to the lighter isotopic signatures observed on tropical trees (i.e. deeper water sources). Soil texture only affected tree water sources, with heavier isotopic xylem water found in trees

The interactions between primates and their snake predators are of interest because snakes have influenced the evolution of primate visual systems and predation has driven the evolution of primate behaviour, including group living. However, there are few accounts of primate-snake interactions in the wild. We report an incident from Northwest Madagascar in which a large female Madagascar ground boa (Acrantophis madagascariensis) captured an adult female Coquerel's sifaka (Propithecus coquereli); upon capture, the prey's group members proceeded to bite and scratch the snake until it released the prey, which survived. However, a broken mandible suffered by the boa during the incident led to its death by starvation 2 months later. Our observations demonstrate that, in addition to improved predator detection and deterrence (i.e., mobbing), active defence against some predators may provide an additional benefit to group living in Coquerel's sifaka, and suggest that predation on group-living primates may be more costly for predators than attacking a solitary species of similar body size. PMID:25737055

Water quality monitoring is used to determine the impact of human activities on the environment. We evaluated water quality in the Água Boa stream, located within the municipality of Dourados, State of Mato Grosso do Sul, Brazil, by analyzing physico-chemical, chemical, and microbiological parameters, as well as chlorophyll concentrations. Five sets of water samples were collected between December 2012 and November 2013 from three locations within the stream. The results showed the presence of Escherichia coli and antibiotic-resistant Pseudomonas spp. strains and high concentrations of organic matter (total dissolved solids), inorganic species (Mg, Ca, and Fe), and agrochemical residues (thiamethoxam). The main stream water contaminants are derived from urban, industrial, and agricultural activities within the watershed. Given the presence of contaminants, it is important that such findings are disseminated in order to highlight the risks that contact with this water may pose to human health. To preserve the environment and improve site conditions, people would need to participate by demanding that normative national and international standards be respected and that the situation be supervised by the competent governmental agencies; this would make it possible to reverse or minimize contamination problems within the Água Boa stream. PMID:26088756

The Amazon basin, one of the most substantial biomass carbon pools on earth, is characterised by strong macroecological gradients in biomass, mortality rates, and wood density from west to east. These gradients could affect necromass stocks, but this has not yet been tested. This study aims to assess the stocks and determinants of necromass across Amazonian forests. Field-based and literature data were used to find relationships between necromass and possible determinants. Furthermore, a simple model was applied to estimate and extrapolate necromass stocks across terra firma Amazonian forests. In eight northwestern and three northeastern Amazonian permanent plots, volumes of coarse woody debris (≥10 cm diameter) were measured in the field and the density of each decay class was estimated. Forest structure and historical mortality data were used to determine the factors controlling necromass. Necromass is greater in forests with low stem mortality rates (northeast) rather than in forests with high stem mortality rates (northwest) (58.5±10.6 and 27.3±3.2 Mg ha-1, respectively). Using all published necromass values, we find that necromass across terra firma forests in Amazonia is positively related to both forest dynamics (mortality mass inputs and a surrogate for decomposition rate (average wood density of living trees)) and forest structure (biomass), but is better explained by forest dynamics. We propose an improved method to estimate necromass for plots where necromass has not been measured. The estimates, together with other actual measurements of necromass, were scaled-up to project a total Amazonian necromass of 9.6±1.0 Pg C. The ratio of necromass (on average weighted by forest region) to coarse aboveground biomass is 0.127. Overall, we find (1) a strong spatial trend in necromass in parallel with other macroecological gradients and (2) that necromass is a substantial component of the carbon pool in the Amazon.

Deforestation fires in the Amazon Basin abound during the dry season (July to October) and are mostly associated with "slash and burn" agricultural practices. Understory fires occur when fires escape from deforested areas into neighboring standing forests; they spread slowly below the canopy, affecting areas that may be comparable or even larger than clear-cut areas. The interannual variabilities of understory fires and deforestation rates appear to be uncorrelated. Areas burned in understory fires are particularly extensive during droughts. Because they progress below a canopy of living trees, understory fires and their effects are not as easily identifiable from space as deforestation fires. Here we analyze satellite remote sensing products for CO and fire to investigate differences between deforestation fires and understory fires in the Amazon Basin under varying climatic conditions. The MOPITT (Measurements Of Pollution In The Troposphere) instrument on board NASA's Terra satellite has been measuring tropospheric CO since 2000, providing the longest global CO record to date. IASI (the Infrared Atmospheric Sounding Interferometer) A and B are two instruments on board METOP-A and -B, respectively, measuring, among others, CO since 2006 and 2012. MODIS (the Moderate Resolution Imaging Spectroradiometer) instruments on board NASA's Terra and Aqua satellites provide, among other products, a daily record of fires and their effects since 2000 and 2002, respectively. The temporal extent of all these datasets allows for the detailed analysis of drought versus non-drought years. Initial results indicate that MOPITT CO emissions during the dry season peaked in 2005, 2007, and 2010. Those were draught years and coincide with peaks in area affected by understory fires.

We describe a climate mode synchronizing forest carbon losses from North and South America by analyzing time series of tropical North Atlantic sea surface temperatures (SSTs), landfall hurricanes and tropical storms, and Amazon fires during 1995-2013. Years with anomalously high tropical North Atlantic SSTs during March-June were often followed by a more active hurricane season and a larger number of satellite-detected fires in the southern Amazon during June-November. The relationship between North Atlantic tropical cyclones and southern Amazon fires (r = 0.61, p < 0.003) was stronger than links between SSTs and either cyclones or fires alone, suggesting that fires and tropical cyclones were directly coupled to the same underlying atmospheric dynamics governing tropical moisture redistribution. These relationships help explain why seasonal outlook forecasts for hurricanes and Amazon fires both failed in 2013 and may enable the design of improved early warning systems for drought and fire in Amazon forests.

Since the 19th Century, the unmatched biological diversity of Amazonia has stimulated a diverse set of hypotheses accounting for patterns of species diversity and distribution in mega-diverse tropical environments. Unfortunately, the evidence supporting particular hypotheses to date is at best described as ambiguous, and no generalizations have emerged yet, mostly due to the lack of comprehensive comparative phylogeographic studies with thorough trans-Amazonian sampling of lineages. Here we report on spatial and temporal patterns of diversification estimated from mitochondrial gene trees for 31 lineages of birds associated with upland terra-firme forest, the dominant habitat in modern lowland Amazonia. The results confirm the pervasive role of Amazonian rivers as primary barriers separating sister lineages of birds, and a protracted spatio-temporal pattern of diversification, with a gradual reduction of earlier (1st and 2nd) and older (> 2 mya) splits associated with each lineage in an eastward direction (the easternmost tributaries of the Amazon, the Xingu and Tocantins Rivers, are not associated with any splits older than > 2 mya). This "younging-eastward" pattern may have an abiotic explanation related to landscape evolution. Triggered by a new pulse of Andean uplift, it has been proposed that modern Amazon basin landscapes may have evolved successively eastward, away from the mountain chain, starting ~10 mya. This process was likely based on the deposition of vast fluvial sediment masses, known as megafans, which apparently extended in series progressively eastward from Andean sources. The effects on drainage patterns are apparent from the location of axial rivers such as the Negro / Orinoco and Madeira which lie at the distal ends of major megafan ramparts at cratonic margins furthest from the Andes. Megafan extension plausibly explains the progressive extinction of the original Pebas wetland of west-central Amazonia by the present fluvial landsurfaces where

We address an open question of Francis and Steel about phylogenetic networks and trees. They give a polynomial time algorithm to decide if a phylogenetic network, N, is tree-based and pose the problem: given a fixed tree T and network N, is N based on T? We show that it is [Formula: see text]-hard to decide, by reduction from 3-Dimensional Matching (3DM) and further that the problem is fixed-parameter tractable. PMID:27125655

In the State of Acre, the Brazil nut tree, Bertholletia excelsa (Lecythidaceae), is classified by the local population into two types according to morphological characteristics, including color and quality of wood, shape of the trunk and crown, and fruit production. We examined the reliability of this classification by comparing morphological and molecular data of four populations of Brazil nut trees from Vale do Rio Acre in the Brazilian Amazon. For the morphological analysis, we evaluated qualitative and quantitative information of the trees, fruits, and seeds. The molecular analysis was performed using RAPD and ISSR markers, with cluster analysis. Significant differences were found between the two types of Brazil nut trees for the characters diameter at breast height, fruit yield, fruit size, and number of seeds per fruit. Despite the significant correlation between the morphological characteristics and the popular classification, we observed all possible combinations of morphological characteristics in both types of Brazil nut trees. In some individuals, the classification did not correspond to any of the characteristics. The results obtained with molecular markers showed that the two locally classified types of Brazil nut trees did not differ genetically, indicating that there is no consistent separation between them. PMID:24089091

Four hydrographic cruises were conducted on the Amazon shelf as part of the AMASSEDS field program. During each cruise, approximately 55 stations were occupied and nutrients, as well as other hydrographic parameters, were measured. The results of this time series sampling program indicate that the nutrient concentrations in the riverine end-member (silicate = 144 μmol kg -1, phosphate = 0.7 μmol kg -1, nitrate = 16 μmol kg -1, ammonium = 0.4 μmol kg -1, and urea = 0.9 μmol kg -1) remain relatively constant, despite a two-fold seasonal variation in river water discharge rate. Of the major nutrients (nitrate, phosphate, ammonium and silicate), nitrate shows the greatest seasonal change in riverine end-member concentration with a high value (23 μmol kg -1) during the March cruise (rising river discharge) and a low value (12 μmol kg -1) during the November cruise (falling river discharge). Nitrate is the dominant nutrient form of inorganic nitrogen throughout most of the river/ocean mixing zone, however, in the outershelf area, where nitrate has been depleted by biological production, this nutrient occurs at concentrations comparable to the other nitrogen species (ammonium, nitrite and urea), which are at levels < 1 μmol kg -1. Nearshore, high turbidity inhibits phytoplankton production because of light limitation, whereas on the outershelf, nitrate appears to be limiting growth more than silicate or phosphate. Nutrient uptake was observed during all four cruises, however, nearly all of this production must be regenerated in shelf bottom waters, because very little of the biogenic materials are buried in the seabed (silicate burial <4% of flux to algal blooms; ˜10% burial of biologically available inorganic nitrogen reaching the river/ocean mixing zone; and <3% burial of phosphate flux to shelf environment). Clearly the Amazon shelf is not an efficient nutrient trap. Initial estimates of primary production on the Amazon shelf suggest that algal blooms are

The Fault Tree Compiler Program is a new reliability tool used to predict the top event probability for a fault tree. Five different gate types are allowed in the fault tree: AND, OR, EXCLUSIVE OR, INVERT, and M OF N gates. The high level input language is easy to understand and use when describing the system tree. In addition, the use of the hierarchical fault tree capability can simplify the tree description and decrease program execution time. The current solution technique provides an answer precise (within the limits of double precision floating point arithmetic) to the five digits in the answer. The user may vary one failure rate or failure probability over a range of values and plot the results for sensitivity analyses. The solution technique is implemented in FORTRAN; the remaining program code is implemented in Pascal. The program is written to run on a Digital Corporation VAX with the VMS operation system.

Large rivers create major gaps in reef distribution along tropical shelves. The Amazon River represents 20% of the global riverine discharge to the ocean, generating up to a 1.3 × 106–km2 plume, and extensive muddy bottoms in the equatorial margin of South America. As a result, a wide area of the tropical North Atlantic is heavily affected in terms of salinity, pH, light penetration, and sedimentation. Such unfavorable conditions were thought to imprint a major gap in Western Atlantic reefs. We present an extensive carbonate system off the Amazon mouth, underneath the river plume. Significant carbonate sedimentation occurred during lowstand sea level, and still occurs in the outer shelf, resulting in complex hard-bottom topography. A permanent near-bottom wedge of ocean water, together with the seasonal nature of the plume’s eastward retroflection, conditions the existence of this extensive (~9500 km2) hard-bottom mosaic. The Amazon reefs transition from accretive to erosional structures and encompass extensive rhodolith beds. Carbonate structures function as a connectivity corridor for wide depth–ranging reef-associated species, being heavily colonized by large sponges and other structure-forming filter feeders that dwell under low light and high levels of particulates. The oxycline between the plume and subplume is associated with chemoautotrophic and anaerobic microbial metabolisms. The system described here provides several insights about the responses of tropical reefs to suboptimal and marginal reef-building conditions, which are accelerating worldwide due to global changes. PMID:27152336

The tropical environment is recognized as having a major impact on global tropospheric chemistry. The data show that the wet season Amazon Basin is an effective sink for ozone and a net source for aerosols. Mixed layer ozone at 150-m altitude averaged 8.5 ppbv compared to about 18 ppbv at 3-km altitude. In addition, a negative ozone gradient (decreasing value to the surface) was observed within the mixed layer. The averaged wet season mixed layer ozone was about 7 ppbv lower than observed during the dry season. This is attributed to the enhanced convective activity associated with the wet season and the change in mixed layer photochemistry from net ozone production (dry season) to a net destruction (wet season). The net sink characteristics of the wet season mixed layer are seen throughout the troposphere of the Amazon Basin in that ozone (3- to 4-km altitude) is typically 15-25 ppbv as compared to dry season values of 30-35 ppbv. In terms of the aerosol source characteristics of the Amazon Basin, mixed layer aerosols (0.1- to 0.4-{mu}m diameter) are a factor of 5-10 higher than observed in the troposphere with mixed layer values of 100-200 aerosols/cm{sup 3}. Analyses of both tropospheric and mixed layer aerosol samples show aerosols which are multisource. Tropospheric samples have size distributions which are trimodal and show modes at aerosol diameters which suggest the aerosols are (1) of lifetimes <1 hour, (2) of lifetimes of days, and (3) mechanically generated elements (e.g., wind-blow dust). Mixed layer data show two of the three modes with no mode which represent aerosols with lifetimes of days.

Inundation areas and wetland habitats for the lowland Amazon basin derived remote sensing with synthetic aperture radar are combined with measurements of greenhouse gas evasion derived from field measurements and new formulations of atmosphere-water. On-going field studies in representative aquatic habitats on the central Amazon floodplain are combining monthly measurements of carbon dioxide and methane concentrations and fluxes to the atmosphere with deployment of meteorological sensors and high-resolution thermistors and optical dissolved oxygen sensors. A real-time cavity ringdown spectrometer is being used to determine the gas concentrations; vertical profiles were obtained by using an equilibrator to extract gases from water, and floating chambers are used to assess fluxes. Gas fluxes varied as a function of season, habitat and water depth. Greatest carbon dioxide fluxes occurred during high and falling water levels. During low water, periods with high chlorophyll, indicative of phytoplankton, the flux of carbon dioxide switched from being emitted from the lake to being taken-up by the lake some of the time. The highest pCO2 concentration (5500 μatm) was about three times higher than the median (1700 μatm). Higher CO2 fluxes were observed in open water than in areas with flooded or floating vegetation. In contrast, methane fluxes were higher in vegetated regions. We measured turbulence as rate of dissipation of turbulent kinetic energy based on microstructure profiling. Comparison of these measurements with those calculated from meteorological and time series measurements validated new equations for turbulent kinetic energy dissipation (TKE) rates during moderate winds and cooling and illustrated that the highest dissipation rates occurred under heating. Measured gas exchange coefficients (k600) were similar to those based on the TKE dissipation rates and are well described using the surface renewal model. These k values are several times higher than

The drainage pattern in Amazonia was expressively modified during the mountain building of central and northern Andes. In Early Miocene, the fluvial systems in western Amazonia flowed to the foreland basins and northward to the Caribbean. By Late Miocene the drainage reversal occurred and formed the transcontinental Amazon River, connecting the Andes and the equatorial Atlantic margin. This event is recorded in the stratigraphic evolution of the Foz do Amazonas Basin by the onset of Andean-derived sedimentation. Additionally, an abrupt increase in sedimentation rate after the reversal occurred in the Foz do Amazonas Basin. Based on three-dimensional numerical models that couple surface processes, flexural isostasy and crustal thickening due to orogeny, I concluded that the Miocene drainage reversal can be explained by the flexural and surface processes response to the Andes formation with no need to invoke dynamic topography induced by mantle convection, as previously proposed. I observed that the instant of drainage reversal is directly linked to the rate of crustal thickening in the orogeny, the rate of erosion and, mainly, the efficiency of sediment transport. Moreover, the numerical experiments were able to predict the increase in sedimentation rate in the Amazon fan after the drainage reversal of the Amazon River as observed in the Late Miocene-Pliocene sedimentary record. However, the present numerical model fails to fully reproduce the evolution of the Pebas system, a megawetland in western Amazonia that preceded the drainage reversal. Therefore, further investigation is necessary to evaluate the mechanisms that generated and sustained the Pebas system.

Recent general circulation model (GCM) experiments suggest a drastic change in the regional climate, especially the hydrological cycle, after hypothesized Amazon basinwide deforestation. To facilitate the theoretical understanding os such a change, we develop an intermediate-level model for tropical climatology, including atmosphere-land-ocean interaction. The model consists of linearized steady-state primitive equations with simplified thermodynamics. A simple hydrological cycle is also included. Special attention has been paid to land-surface processes. It generally better simulates tropical climatology and the ENSO anomaly than do many of the previous simple models. The climatic impact of Amazon deforestation is studied in the context of this model. Model results show a much weakened Atlantic Walker-Hadley circulation as a result of the existence of a strong positive feedback loop in the atmospheric circulation system and the hydrological cycle. The regional climate is highly sensitive to albedo change and sensitive to evapotranspiration change. The pure dynamical effect of surface roughness length on convergence is small, but the surface flow anomaly displays intriguing features. Analysis of the thermodynamic equation reveals that the balance between convective heating, adiabatic cooling, and radiation largely determines the deforestation response. Studies of the consequences of hypothetical continuous deforestation suggest that the replacement of forest by desert may be able to sustain a dry climate. Scaling analysis motivated by our modeling efforts also helps to interpret the common results of many GCM simulations. When a simple mixed-layer ocean model is coupled with the atmospheric model, the results suggest a 1{degrees}C decrease in SST gradient across the equatorial Atlantic Ocean in response to Amazon deforestation. The magnitude depends on the coupling strength. 66 refs., 16 figs., 4 tabs.

Understanding tropical rainforest response to heat and drought is critical for quantifying the effects of climate change on tropical ecosystems, including global climate-carbon feedbacks. Of particular importance for the global carbon budget is net ecosystem exchange of CO2 with the atmosphere (NEE), a metric that represents the total integrated signal of carbon fluxes into and out of ecosystems. Sub-annual and sub-basin NEE estimates have previously been derived from process-based biosphere models, despite often disagreeing with plot-scale observations. Our analysis of airborne CO2 and CO measurements reveals monthly, sub-Basin scale (~106 km2) NEE variations in a framework that is largely independent of bottom-up estimates. As such, our approach provides new insights about tropical forest response to climate. We find acute sensitivity of NEE to daily and monthly climate extremes. In particular, increased central-Amazon NEE was associated with wet-season heat and dry-season drought in 2010. We analyze satellite proxies for photosynthesis and find that suppression of photosynthesis may have contributed to increased carbon loss in the 2010 drought, consistent with recent analysis of plot-scale measurements. In the eastern Amazon, pulses of increased NEE (i.e. net respiration) persisted through 2011, suggesting legacy effects of the drought that occurred in 2010. Regional differences in post-drought recovery in 2011 and 2012 appear related to long-term water availability. These results provide novel evidence of the vulnerability of Amazon carbon stocks to short-term temperature and moisture extremes.

There is a childhood saying about a confused dog who thinks he sees a possum in a tree. The problem is that the possum is actually in a different tree so the dog barks up the wrong tree. American education is constantly playing both dog and possum. Sometimes they are the prey, and sometimes they are just confused about what and where the prey is.…

Moist tropical forests in Amazonia and elsewhere are subjected to increasingly severe drought episodes through the El Niño-Southern Oscillation (ENSO) and possibly through deforestation-driven reductions in rainfall. The effects of this trend on tropical forest canopy dynamics, emissions of greenhouse gases, and other ecological functions are potentially large but poorly understood. We established a throughfall exclusion experiment in an east-central Amazon forest (Tapajós National Forest, Brazil) to help understand these effects. After 1-year intercalibration period of two 1-ha forest plots, we installed plastic panels and wooden gutters in the understory of one of the plots, thereby excluding ˜890 mm of throughfall during the exclusion period of 2000 (late January to early August) and ˜680 mm thus far in the exclusion period of 2001 (early January to late May). Average daily throughfall reaching the soil during the exclusion period in 2000 was 4.9 and 8.3 mm in the treatment and control plots and was 4.8 and 8.1 mm in 2001, respectively. During the first exclusion period, surface soil water content (0-2 m) declined by ˜100 mm, while deep soil water (2-11 m) was unaffected. During the second exclusion period, which began shortly after the dry season when soil water content was low, surface and deep soil water content declined by ˜140 and 160 mm, respectively. Although this depletion of soil water provoked no detectable increase in leaf drought stress (i.e., no reduction in predawn leaf water potential), photosynthetic capacity declined for some species, the canopy thinned (greater canopy openness and lower leaf area index) during the second exclusion period, stem radial growth of trees <15 m tall declined, and fine litterfall declined in the treatment plot, as did tree fruiting. Aboveground net primary productivity (NPP) (stemwood increment and fine litter production) declined by one fourth, from 15.1 to 11.4 Mg ha-1 yr-1, in the treatment plot and decreased

This study utilizes TRMM satellite precipitation radar, lightning imaging sensor, and passive microwave imager data together with ground-based lightning data to investigate the vertical structure, lightning, and rainfall characteristics of Amazonian and central South American convection for three separate wet-seasons. These characteristics are partitioned as a function of 850 mb zonal wind direction, motivated by observations collected during the six-week TRMM-LBA field campaign. The TRMM-LBA field campaign observations suggest that systematic variations in Amazonian convective vertical structure, lightning, and rainfall are all linked to bimodal variations in the low-level zonal wind (e.g., easterly and westerly regimes). The more spatially and temporally comprehensive TRMM dataset used in this study extends the TRMM-LBA observations by examining regime variability in Amazonian and South American convective structure over a continental scale domain. On a continental-scale, patterns of east and west regime 850 mb winds combined with LIS lightning flash densities suggest the presence of synoptic-scale controls (e.g., intrusion of extratropical frontal systems and interaction with the SACZ) on regional-scale variability in convective vertical structure. TRMM PR, TMI and ground-based lightning data suggest that regional variability in wet-season convective structure is most evident over the southern Amazon, Mato Grosso, Altiplano, southern Brazil, and eastern coastal regions of central and southern South America. Convective vertical structure, rain fall rates, and lightning activity are all more pronounced during easterly (westerly) regimes over the southern Amazon and Mato Grosso (Altiplano, and southern Brazil). Importantly, when considered with case-study results from TRMM-LBA, the systematic differences in convective structure that occur as a function of regime suggest that associated regime-differences may exist in the vertical distribution of diabatic heating

Inland waters are known as important sources of methane to atmosphere. Methane is produced in anaerobic environments usually found in lake and floodplain bottom sediments, which is the main reason why most of the information regarding methane fluxes come from this environments. However, while floodplains dry during low water season, reducing methanogenesis, rivers keep the capacity to emit methane throughout the year. Here we present results of CH4 flux measurements from 4 large tropical rivers within the Amazon basin obtained with floating chambers in 10 sampling sites during low water (between September and November of 2011) and high water seasons (May, 2012). Sampling sites were located in three main tributaries of Amazon Rivers, Madeira, Xingu and Tapajós, and in the Amazon River mainstem. In the Madeira River high water fluxes ranged from 2.85 to 30.99 mmol m-2 yr-1 while during low water from 77.47 to 183.31 mmol m-2 yr-1. Fluxes for the Amazon and Tapajós were, respectively, 110.99 and 80.01 mmol m-2 yr-1 for the high water season and 169.71 and 193.18 mmol m-2 yr-1 for low water. In the Xingu River two sites had higher fluxes during low water, 314.90 and 571.49 mmol m-2 yr-1 (91.93 and 51.11 mmol m-2 yr-1 in the high water respectively). The two other sites had an opposite pattern with 296.56 and 60.80 mmol m-2 yr-1 in the low water and 846.95 and 360.93 mmol m-2 yr-1 during high water; one site showed equal fluxes for both seasons. Most of the fluxes were higher during low water, with the exception of the three sites at the Xingu River, where fluxes during high water were higher or equal than in low water. These results show a different pattern than described before for these riverine systems, in which higher methane fluxes during high water were expected due to inputs from surrounding anoxic floodplain environments. Instead, our data shows that methane in rivers can be produced within river channels. Lower fluxes during high water could be related to

A 4-year-old blue-fronted Amazon parrot (Amazona aestiva) was admitted for vocalization secondary to constipation. Saline infusion cloacoscopy revealed the presence of a 2-cm-diameter cloacolith within the coprodeum that was obstructing the rectal opening. The cloacolith was fragmented with a pair of biopsy forceps and the pieces removed. The cloacolith was subsequently analyzed and was composed of 100% uric acid salts. The bird improved completely and was able to defecate normally after the procedure. Cloacoliths are relative uncommon cloacal conditions, and this case documents cloacoscopic findings, rectal obstruction, and confirmation of its uric acid composition by urolith analysis. PMID:20806660

Biogeochemical distinction of methane emissions to the atmosphere may essentially rely on the surface area and morphometry of Amazon hydroreservoirs. Tucurui (deep) and Samuel (shallow) reservoirs released in average 13.82+/-22.94 and 71.19+/-107.4 mg CH4 m(-2)d(-1), respectively. delta13C-CH4 values from the sediments to the atmosphere indicate that the deep reservoir has extended methanotrophic layer, oxidizing large quantities of light isotope methane coming from the sediments, while sediment-generated methane can easily evade the shallow reservoir. PMID:15894055

Understanding the impact of road investments on deforestation is part of a complete evaluation of the expansion of infrastructure for development. We find evidence of spatial spillovers from roads in the Brazilian Amazon: deforestation rises in the census tracts that lack roads but are in the same county as and within 100 km of a tract with a new paved or unpaved road. At greater distances from the new roads the evidence is mixed, including negative coefficients of inconsistent significance between 100 and 300 km, and if anything, higher neighbor deforestation at distances over 300 km.

Histologic examination of organs of clinically healthy amazons was carried out. Only variations from the chicken are presented, among others: Occurrence of a complex of vessels and many Herbst' corpuscles in the nasal cavity; evidence of a thick muscular layer as well as many Herbst' corpuscles and nerve fibers as the cover of the syrinx; demonstration of muscular trabeculae in the parabronchia; detection of an artery accompanying the testes with muscular layers reaching into the adventitia and many nerve fibers; very small numbers of active lymph follicles within the white pulp of the spleen. PMID:7940511

Improved simulations and sensors are producing datasets whose increasing complexity exhausts our ability to visualize and comprehend them directly. To cope with this problem, we can detect and extract significant features in the data and use them as the basis for subsequent analysis. Topological methods are valuable in this context because they provide robust and general feature definitions. As the growth of serial computational power has stalled, data analysis is becoming increasingly dependent on massively parallel machines. To satisfy the computational demand created by complex datasets, algorithms need to effectively utilize these computer architectures. The main strength of topological methods, their emphasis on global information, turns into an obstacle during parallelization. We present two approaches to alleviate this problem. We develop a distributed representation of the merge tree that avoids computing the global tree on a single processor and lets us parallelize subsequent queries. To account for the increasing number of cores per processor, we develop a new data structure that lets us take advantage of multiple shared-memory cores to parallelize the work on a single node. Finally, we present experiments that illustrate the strengths of our approach as well as help identify future challenges.