Monday, 10 December 2012

The negative impacts of cigarettes, on both smokers and
those around them, are widely known. While some effects may only be cosmetic
(wrinkling, yellowing of the skin), others, such as cancer, can be fatal.
According to a team of Mexican researchers, however, cigarette smoking can be
beneficial to at least one group: urban birds. The benefit, unsurprisingly, does not come from actually smokingthe cigarettes, but instead from
incorporating discarded butts into nests. There, chemical residues in the
cigarette fibers appear to act as repellents that keep parasites away from
vulnerable nestlings

These unusual and surprising findings, published in the
journal Biology Letters, were the
result of an undergraduate research project conducted on the campus of the
National University of Mexico in Mexico City. The project was undertaken after
researchers noted the presence of cigarette butts in nests of urban-dwelling
house finches (Carpodacus mexicanus)
and house sparrows (Passer domesticus). Similar patterns have also been reported in other species
and locations, prompting the scientists to wonder whether the inclusion of the
butts was deliberate. This seemed particularly likely given the fact that
nicotine, one of the dominant chemicals in cigarettes, is known to repel
ectoparasites—parasites that live on the surface of the body. In fact, both
poultry and rabbit farmers use nicotine as an organic method of parasite
control.

To investigate whether the urban birds had also begun to
employ nicotine as a pesticide, the researchers performed both experimental and
observational work. For the experimental portion of the study, nests of both
species were located and fitted with thermal traps designed to attract
ectoparasites by mimicking the heat signatures of potential hosts. Cellulose
cigarette fibers—from either smoked or unsmoked cigarettes—were attached to the
heating component of each nest, and a strip of adhesive was placed next to the
heaters in order to capture all approaching parasites. The researchers hypothesized that they would find fewer
parasites near the heaters fitted with smoked cigarette fibers, since these
materials contained a higher proportion of pesticidal chemicals. Indeed, they
found that parasites were not only more scarce at these nicotine-treated sites,
but, in some cases, were nearly 6 times less likely to appear.

Once the experiments were complete, the research team waited
until the birds had finished breeding and then returned to harvest the empty
nests. These were weighed and then dissected; each nest’s cellulose content was
measured, and all ectoparasites were counted and identified. Assuming that
cigarette butts act as a repellent, the scientists expected to find fewer
parasites in nests with more butts. The majority of nests of both house sparrows and house
finches contained bits of discarded cigarettes. Interestingly, while butts were
more likely to be found in nests of the former (89% vs. 86%), they were found
in higher quantities in nests of the latter (an average of 10 vs. 8 per nest).
Both species suffered from similar rates of parasite infestation, and, as
predicted, parasite abundance was negatively related to the presence of cigarette
fibers.

The results indicate that the nicotine-laced cellulose deters
parasites—and, further, suggest that the birds may be selecting these building
materials on purpose. You might think that would require a bit more
thoughtfulness than is possessed by the average songbird, but this is not the
first time they have shown such an ability. Several other species, including
both European starlings (Sturnus vulgaris)
and tree swallows (Tachycineta bicolor),
are known to deliberately incorporate green plant materials into their nests; like
cigarettes, these botanical building blocks contain compounds that repel
parasites.

Thus, the use of the cigarette butts appears to be “an urban
manifestation of a pre-existing behavior”—or, to quote the title of the paper
in which these results were presented, the use of “new ingredients for an old
recipe.” The sparrows and finches appear to be using the recipe to
“self-medicate,” though for this to be proven definitively, further work will
be required. Specifically, while it is clear that the cigarette butts reduce
the likelihood of parasite infestation, it is still necessary to show that the
birds are purposely selecting these items for inclusion in their nests, and
that use of the butts improves the birds’ reproductive success.

The research team has suggested several additional studies
that could help them identify whether the cellulose might serve another purpose
(such as providing insulation) and also whether the toxic residues in the
fibers might have negative effects on nestlings. These data will reveal
whether—in the case of birds, at least—cigarettes can sometimes do more good
than harm.

In a perfect world, communicating animals would always be capable of hearing each other's signals and responding appropriately. In the real world, however, the environment is filled with interfering sounds such wind, rainfall, other species' vocalizations, and, increasingly, anthropogenic noise. Under these conditions, lucky animals may be able to respond to a signal when they should, and avoid responding when they shouldn't. However, some individuals might accidentally miss out on hearing an important signal, or react to one that hasn't even been given. While these mistakes might not always have repercussions, there might be times--especially when a predator is involved--when they could mean the difference between life and death.

This is a possibility that has only rarely been studied experimentally and (as far as this author knows) has never been investigated in mammals--until now. A team of American researchers has just reported findings from a field study of endangered Stephens' kangaroo rats (Dipodomys stephensi) living near noisy roadsides in California's Southwestern Riverside County Multispecies Reserve. Their results indicate that human noise pollution can cause the rats to make both of the communication errors mentioned above. As a result, the researchers worry that these nocturnal animals, which rely on acoustic signals to "coordinate social interactions...in a variety of contexts," may suffer from the introduction of human noise pollution into their habitats.The researchers explored the effects of acoustic pollution by recording both signals and noise at roadside rat burrows. In this case, the signals were footdrums, or thumps made by the rats as they rapidly stamp one foot against the ground; a series of these is known as a "footroll." These low-pitched sounds travel well through both air and soil, and are therefore audible to rats that are outdoors and to those that are holed up in their subterranean burrows. In order to compare the acoustic properties of footdrums to those of traffic noise, the researchers also recorded car traffic at distances of both 10 and 25m from the edge of the road. They then used acoustic analysis software to quantify a variety of characteristics in both sets of recordings (minimum, maximum, and fundamental frequency, plus total bandwidth), and investigate similarities in the two types of sound. In other words, they examined the likelihood that noise pollution might "mask" kangaroo rat communication.

The scientists also conducted a series of playback experiments during which wild rats were exposed to recordings of footrolls. These signals were played during three different types of ambient noise conditions: a no-noise control, traffic noise, and cricket chirps (high-pitched noise that should not mask rat footdrums, but should still elicit any interesting responses to noise in general). Rat behavior was observed throughout each trial so that the researchers could determine whether the animals were impacted by any type of environmental noise (i.e., traffic and crickets vs. control), and also whether one type of noise was particularly disruptive to communication (i.e., traffic vs. crickets).Across the 39 footdrum recordings collected, all four frequency characteristics were similar to those measured for the traffic recordings. For example, the minimum and maximum frequencies of footdrums were found to be 126 and 352 Hz (respectively); for traffic noise, these values were 118 and 371 Hz. In other words, both signal and noise have quite similar acoustic properties, increasing the likelihood that kangaroo rats will make mistakes while communicating. Indeed, rats exposed to traffic sounds during the playback experiments seemed aware of the fact that the noise pollution could impair their ability to hear. Even before any footdrumming recordings were broadcast into the experimental chamber, the noise-exposed individuals spent more time alert; they also delivered more signals, themselves. While rats in the control and cricket treatments immediately responded to footdrums when they were broadcast, animals in the traffic treatment tended not to alter their behavior; they also continued to footdrum for no apparent reason. Thus, they not only failed to detect actual signals amidst the din of noise pollution, but they also sometimes interpreted the footdrum-like traffic noise as a signal from another rat that wasn't even there.

(A Stephens' kangaroo rat in the entrance to its burrow. Image courtesy of the L.A. Times--which also featured an article about whether the rats act as a "barrier to development.")

Cumulatively, these results suggest that kangaroo rats should--and do--have difficulty discriminating between signals and traffic noise. This could have several negative impacts on both individual animals and the entire population. Rats that accidentally interpret traffic as signal might waste energy producing a footdrum; further, this highly audible response might make them more obvious to predators such as owls or cats. Additionally, animals whose signals are not heard may fail to defend their territories or attract mates, and may therefore have lower reproductive success.This is bad news given that the rats have already suffered significant habitat losses. Until these recent findings were reported, researchers had thought that roadsides were actually beneficial to this species since they offered individuals the perfect substrate for digging burrows. Noise pollution, however, may cause this anthropogenic habitat to serve as a trap rather than a refuge. One glimmer of hope is offered by previous studies of avian species living in similarly noisy habitats: In order to escape acoustic masking, some birds can improve communication by altering their signal properties (e.g., pitch, volume, timing). Though it may not be easy or likely, it is possible that the Stephens' kangaroo rats might eventually learn to drum more rapidly or more intensely; given enough time, the species might even evolve better hearing so that noise-exposed individuals are more capable of discriminating between traffic and footdrum. ---Shier, D.M., Lea, A.J., and Owen, M.A. 2012. Beyond masking: endangered Stephens' kangaroo rats respond to traffic noise with footdrumming. Biological Conservation 150:53-58.

Thursday, 6 December 2012

There are many reasons to watch what you eat--nutritional value, chemical use during growth or preparation, carbon footprint, and any number of other factors related to a food's healthfulness and ecological impact. For consumers feeling overwhelmed by all these concerns, there is good news in a recent issue of Frontiers in Ecology and the Environment: A trio of American researchers has revealed that some supermarket choices allow consumers to simultaneously achieve multiple goals. Specifically, the scientists report that seafood lovers can reap health benefits from fish while also promoting sustainable fishing.

The research team initiated their study after noticing a number of public health campaigns about seafood and wondering whether the ads might be at cross purposes. Most of the education efforts focused on one of three issues: sustainability, fish nutrients (omega-3 fatty acids, in particular), and toxins. Sustainability is, of course, a positive characteristic; so is a high level of omega-3 fatty acids, which can, among other things, improve heart health. Toxins, including heavy metals and polychlorinated biphenyls (PCBs), have long been recognized as a drawback of seafood consumption. So what if consumers, in response to public awareness campaigns, buy unhealthy fish in an attempt to improve sustainability, or purchase unsustainable catch in an effort to be more healthful?

The current work aimed avoid this by determining the amount of overlap between these three characteristics. The researchers collected information on the traits from pre-existing datasets. For example, they utilized fishery sustainability rankings calculated by the Monterey Bay Aquarium and Blue Ocean Institute; another important source of information was FishBase, which provided data on each species' risk of becoming extinct as a result of being fished. Health benefits were measured as a function of omega-3 fatty acid concentrations, while mercury (one of the most extensively researched seafood toxins) was used to indicate health risk.

(A haul of orange roughy--a species that possesses high mercury levels and has been overharvested. Image courtesy of Southern Fried Science, which features an interesting article about whether these fish can ever be harvested sustainably.)

When they looked for relationships between each of these variables, the scientists discovered that the most unsustainable species were generally also those that had the highest levels of mercury contamination; further, there were no clear health benefits of these vulnerable fish. Species featured on the resulting "red list" include many tunas, swordfish, and several varieties of Pacific rockfish. Happily, the even longer "green list" features a number of healthier and more sustainable alternatives, including pollock, sole, and plaice. Since science is rarely ever black and white (or, in this case, red and green), the project also yielded a "gray list." This contains the names of several species for whom the sustainability-health relationship was more complex--animals with healthier populations but also high mercury levels, for instance. Still, this list is quite a bit shorter than the other two--both of which offer clear and useful advice for consumers looking to make purchases that are good for their own health and that of the wider ecosystem.

The researchers caution, however, that some of their information came from sources that are a few years old; it will be important to update their datasets and re-run the analyses periodically in order to generate up-to-date advice. This will be particularly vital for the data on each species' population numbers and vulnerability, since these are likely to fluctuate as ever more consumers seek the healthiest products available. There were also several species that were left out of the analysis because data were not available for all three metrics. Again, it would be valuable to re-run the analysis when and if these data are ever collected, since this information could provide further guidance on which fish can be safely eaten, and which should be avoided.

Tuesday, 4 December 2012

Elasmobranchs--sharks, rays, and skates--are among the most endangered of marine organisms, with approximately one-third of all species considered either threatened or near threatened. Fishing is the biggest threat to these animals, many of which are either targeted deliberately or are caught accidentally after becoming entangled in fishing equipment. It also doesn't help that they tend to have slow reproductive rates and inhabit areas that are being degraded or destroyed.

(A flapper skate, or Dipturus batis. This elasmobranch resident of the Celtic Sea is classified as critically endangered. Image courtesy of Arkive.)

One of the most popular techniques for elasmobranch conservation--and, indeed, for the conservation of many marine species--is the creation of marine protected areas, or MPAs. These offer wildlife a refuge where human activities are diminished or completely abolished. While MPAs have clear benefits for predominantly sessile species such as barnacles or tube worms, they may not be as effective for mobile species such as elasmobranchs; after all, sharks and their kin can quite easily swim into nearby unprotected waters where they may become bycatch.

In a new study on elasmobranchs living in the Irish Sea, a team of Irish and British scientists report that MPAs likely can protect sharks, rays, and skates, but only if the locations of the protected areas are chosen wisely. Specifically, they suggest that "de facto refugia," or naturally occurring areas where low fishing intensity overlaps with high elasmobranch density, would make very useful MPAs. In fact, they identified one such area in the northeastern portion of the Celtic Sea, where the seabed's frequently shifting sands render trawling both "inefficient and unpredictable." The general lack of fishing here--despite the area's close proximity to a port and its fairly good returns on fishing effort--has allowed elasmobranchs to flourish. Elasmobranch diversity and abundance in this habitat could be threatened by future changes to fishing policy encouraging fishermen to utilize this area more fully. Thus, creation of an MPA here would not only protect a habitat that is clearly useful to elasmobranchs, but would also ensure that it continues to act as a refuge over the long term. Since the area is already neglected by the bulk of fishermen, managers probably wouldn't need too much money or manpower to maintain the MPA boundaries, plus they likely wouldn't hear too many complaints.

(A spiny dogfish, or Squalus acanthias. This species, which can be found in heavily fished areas of the Celtic Sea, is listed as vulnerable on the IUCN Red List. Image courtesy of Fish Index.)

Researchers and managers associated with other marine habitats should be pleased to know that the methods used for the current study were relatively simple and easy to apply to other systems. The scientists utilized data collected during the Irish Groundfish Survey, a standardized bottom-trawl survey that has been conducted annually since 1997. This dataset allowed them to keep track of the total number of individuals observed, species identity (and, therefore, density and overall richness of elasmobranchs), and body size. They also examined vessel monitoring system (VMS) records in order to assess where Irish fishermen spent the bulk of their time, and how productive those areas were. The researchers' final models controlled for environmental variables such as biogeographic region, seabed substratum, water depth, and exact latitude/longitude.

As for the future of this particular refuge in the northeastern portion of the Celtic Sea, the scientists recommend further studies exploring how/why the habitat contributes to elasmobranch biomass and richness. It may act as a nursery, giving juveniles shelter during a time when they are too small and weak to adequately defend themselves. It could also protect breeding adults and give them the opportunity to produce more and/or healthier young. It is important to understand these dynamics in more detail, since differential survival of particular age/sex/size classes can influence metapopulation structure--or, in other words, have cascading effects on elasmobranch populations throughout the region.

Sunday, 2 December 2012

Although we know that humans have had a significant impact on the environment and the species that dwell within it, we don't always have detailed information on when our influence was first felt, or how the effects of our activities interact with those caused by other types of perturbation. As a result, it can be difficult to establish goals associated with conservation and management efforts. For instance, if we are trying to return an ecosystem to a pre-disturbance baseline, how do we know what that baseline actually is?

(NASA image of Pelorus Island, located off the northeastern coast of Australia. Image courtesy of Tageo.)

To help answer this question for corals in Australia's Great Barrier Reef, a group of researchers recently surveyed both living and dead coral assemblages at three sites around Pelorus Island, an inshore reef located near the outlets of both the Herbert and Burdekin Rivers. Since the late 19th century, when Queensland was colonized by Europeans (and their associated livestock and agricultural crops), the rivers have delivered altered levels of sediments, nutrients, and herbicides to the Australian shore--and the corals located along it. During the recent study, researchers collected paleoecological data in order to determine the impacts of these anthropogenic influences on coral growth.

Specifically, they sent scuba divers underwater to survey both living and dead coral assemblages. The divers noted the identity, percent cover, and growth morphology of the corals. They also gathered samples of dead corals that could later be examined with computed axial tomography (CAT) scans, which can provide information on the age of each coral colony. Finally, the researchers scoured the scientific literature for information on historical climate, weather, and hydrological patterns that might have been associated with fluctuations in coral communities and growth over time.

Cumulatively, the data suggested that the Pelorus Island corals had successfully weathered a series of environmental perturbations over the years, but that they were unable to combat anthropogenic disturbances. The oldest of the three study sites was dated to the mid-3rd century; its younger neighbors sprang up in the mid-9th and early 16th centuries. While Acropora coral species dominated the reefs for several hundred years, the researchers documented a shift occurring somewhere between 1920 and 1955: Acropora were replaced with Porites, Montipora, Pavona, Millepora, and Echinopora species, with exact assemblages varying depending on the site. The researchers also observed different growth morphologies emerging over time, with modern Acropora appearing much thinner and less branched than their ancestors. This suggests that the corals had tried but failed to regenerate themselves after an environmental disturbance.

This is also indicated by the paleoenvironmental data, which revealed that the coral colonies experienced two decades of cool temperatures just prior to the beginning of their collapse; this was followed by a drought and an increase in both cyclone activity and water flow from the nearby rivers. None of these things would have been pleasant for the corals, but none of them should have been insurmountable, either. Corals are actually fairly good at recovering from "acute" environmental stressors such as weather events--except, that is, when they are also dealing with chronic stressors. In this case, the chronic stressors were influxes of chemicals resulting from human use of fertilizers. The researchers reported that nutrient flows are thought to have increased anywhere from 2.1- to 19.5-fold since European colonization, and, in particular, from 1930 onwards. Thus, in the early 20th century, corals near the Herbert and Burdekin Rivers were exposed to abnormally high amounts of sediment, herbicides, and nutrients, all of which disrupted the delicate balance of the coral ecosystem.

These results highlight that even the most resilient and hearty of species have limits on how many, and what type of, environmental stresses they can tolerate. Further, given the current differences observed in coral assemblages growing at the three closely situated study sites, it appears that there can be extremely fine-scale variations in how ecosystems will respond to the same set of environmental conditions. This, in turn, suggests that researchers and managers should be cautious about making generalizations about particular localities--such as "Pelorus Island" or "The Great Barrier Reef"; these might be overly simplistic and fail to take into account important local dynamics. Finally, the scientists point out that this sort of paleoecological work is very useful for more accurately determining the "baselines" to which disturbed systems should be returned. Monitoring at the Pelorus Island reefs only began in the 1980s; thus, researchers were previously unaware of how the coral colonies looked before their early-20th-century collapse. Additional paleoecological work at this and other sites should help conservationists make more appropriate targets for preservation and reclamation plans.

Who is the "Anthrophysist"?

I am a biologist who studies the ways in which anthropogenic disturbance impacts animals (especially birds). I hope that the results of my work, and the work of other researchers like me, can help humans learn how to coexist more peacefully with wildlife. I am also interested in the role that nature has played in shaping human cultures around the world and over the centuries. Although this blog will predominantly focus on scientific research, I hope to occasionally profile some anthropological work as well, in order to better highlight the interconnectedness of humans ("anthro") and nature ("physis").