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Can you prevent a specific subject category (with associated items) from showing up on the subject list?

I want subject guides and course guides to display separately on the home page of my website (we want to have a home page similar to VCU's with tabs and using the API). I'm wondering though if I can create a subject category for Course Guides and not have it show up in the list of subjects but show up elsewhere, or if there's another way to separate course from subject guides.