WP2014-12-20http://vocabularies.wikipathways.org/wp#wpAndra WaagmeesterMaastricht UniversityUtilityClassAuthorDefinition: An author is creator, editor, or curator of a pathway. The author is known by a unique WikiPathways username.DatasourceReferenceUnificationXref in BioPAXPathwayVersionGeneProductSuperclass for the following BioPAX terms:<br>
http://www.biopax.org/release/biopax-level3.owl#Dna<br>
http://www.biopax.org/release/biopax-level3.owl#Gene<br>
http://www.biopax.org/release/biopax-level3.owl#Rna<br>
http://www.biopax.org/release/biopax-level3.owl#Protein<br>UnknownValue for gpml:Type for a gpml:DataNode. It indicates that the type is either not known to science or at least not known to the pathway author.PathwayAnnotationno corresponding element in BioPAXLabelno corresponding element in BioPAX
GPML:LabelCompartmentno corresponding elements in BioPAX and GPMLGroupBinding<br><b>Description:</b> A binding interaction between two physical entities resulting in the formation of an explicit complex that is reversible without an external factor (e.g. protein complexes). Binding subclass of Mimbinding
<br>
<b>Properties:</b> <br>
- hasParticipant<br>
<b>GPML:</b> Line with both Points having a "mim-binding" arrowhead.BasicInteraction<br><b>A BasicInteraction is a generic biological interaction between two or more pathway elements that is not identified with a MIM type.</b><br>
* GPML: Line (ArrowHead = none, "Line", "Arrow" or "TBar")<br>
* BioPAX: InteractionCurationTagControlledVocabulary<br><b>Defintion: </b>A controlled vocabulary is a vocabulary consisting of a prescribed list of terms or headings each one having an assigned meaning. ref: http://edutechwiki.unige.chMetabolic ProcessCellular Process<br><b>Definition: </b> Any process that is carried out at cellular level.Molecular FunctionPhysiological ProcessPathwayCategoryUnspecified<p>
<b>Definition:</b> indicates some relationship between the data nodes that are connected, but we do not know what that interaction is.
</p>
<ul>
<li>PathVisio (Java): Line Type option "Line"</li>
<li>GPML: ArrowHead="Line", or no ArrowHead property present</li>
</ul>Activity<p>
<b>Definition:</b> Any kind of conversion or other activity occurring between two data nodes.
</p>
<ul>
<li>PathVisio (Java): Line Type option "Arrow"</li>
<li>GPML: ArrowHead="Arrow"</li>
</ul>Inhibitory Activity<p>
<b>Definition:</b> Any kind of inhibition or other inhibitory activity.
</p>
<ul>
<li>PathVisio (Java): Line Type option "TBar"</li>
<li>GPML: ArrowHead="TBar"</li>
</ul>CytosolRegionusernameLinks to FOAF, SciencepeoplerealNameLinks to FOAFemailrevisionEquivalent to http://schema.org/versionhasIdentfierDC.identifierhasPathwayIndirect<p>
<b>Definition:</b> Indicates there are one or more steps missing in the interaction from the first data node to the second data node connected by this interaction.
</p>
<ul>
<li>PathVisio (Java): Line Style option "Dashed"</li>
<li>GPML: LineStyle="Broken"</li>
</ul>organismcategoryIndicates the pathway category to which a selected pathway adherespathwayOntologyhasParticipantinteractionTargetunifiedIdentifierIn WikiPathways curators have the liberty to use any identifier they like. We store a unified Identifier to enable integrative approaches recognizing similar object with different identifier patterns. The mapping between original identifiers and the unified Identifier is provided by the same bridgeDb framework as used in WikiPathways.bdbEnsemblbdbUniprotbdbHmdbbdbChemspiderbdbEntrezGeneinteractsWithPathway elements can interact among each other. wp:interactsWith is to express a basic interaction. Direct<p>
<b>Definition:</b> Indicates there are no steps missing in the interaction from the first data node to the second data node connected by this interaction.
</p>
<ul>
<li>PathVisio (Java): Line Style option "Solid"</li>
<li>GPML: LineStyle="Solid" or LineStyle not specified</li>
</ul>