It's the same as regular foundation...you just put it in the frames the way you would any other. The cells are just smaller. If you have plastic foundation and frames, you'll need wooden frames for any kind of wax foundation, though.

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"The mouth of a perfectly contented man is filled with beer." - Egyptian Proverb, 2200 BC

My NUCS are coming with 5.4mm foundation. I was thinking of adding these to a normal deep hive body and then placing a sheet of Small Cell foundation on either side of the Frames and then Starter strips for the rest. I was then thinking that next year i would remove these frames (Some how) and replacing them with frames with small cell... or could i do this sooner ???

My bee packages i'm just going straight to Small cell but i'm not to sure as to what to do about the NUCS

I'd go with the bees. keep putting the small cell in the middle of the brood nest as the bees can fill that space easily and moving the large cell to the outside edges. Eventually it will get filled with honey and you can harvest it or next spring it may be empty and you can pull it. Or you can move the small cell brood up a box and put an excluder between and after the brood emerges from the large cell pull it.