Installing XHMM

XHMM was developed assuming compilation on Linux with gcc version 4.4.
Other requirements are the pthread and lapack C libraries.

[Also, to modify the command-line options, it is necessary to install Gengetopt (recommended version 2.22 or higher).]

Uncompress the xhmm zip file, where you want to install it:
unzip master.zip
Change to the xhmm directory:
cd statgen-xhmm-*
Run make to install the software (which starts by automatically compiling the included hmm++ library):
make

XHMM is developed by Menachem Fromer and Shaun Purcell at Mount Sinai School of Medicine, The Broad Institute of MIT and Harvard, Analytic and Translational Genetics Unit (ATGU) at Massachusetts General Hospital