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Current status Jenkins is being used for validation – Invaluable for ontology developers – System relatively easy to set up and maintain Release process still (mostly) run by central cron – Only running limited subset of checks – Missing classification step – Need to consolidate Extend to annotations

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Release pipeline changes Current: – Go_ext is direct nightly copy of editors file – Other files are filtered No inter-ontology links Immediate changes: – Editors file will include additional axiom tracking info This will be removed from all release versions – Using obolibrary standard versioning scheme – New obo2owl conversion Deprecate version that is built using MySQL pipeline Encourage bioinformaticians to use this – http://wiki.geneontology.org/index.php/Ontology_Release_File s_Proposal http://wiki.geneontology.org/index.php/Ontology_Release_File s_Proposal

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Future changes Editors version will eventually switch to OWL – Advantages owl:imports Direct use of reasoning – Disadvantages Protégé lacks many OE features

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Future changes Editors version will eventually switch to OWL – Advantages Owl:imports Direct use of reasoning – Disadvantages Protégé lacks many OE features

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