Just setting up a new ESS board to my existing BOB and while trying to use the Automated Setup of Inputs, I get a message that says "This is only for printer port modes".Can I still use this to set up limits and homing or do I need to do something different?

You need to enter the port and pin numbers normally. If you have put the machine together yourself you will know which port and pin you have connected things too, so it should be easy enough to set things up.Hood