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Where my-multi-a and my-multi-b are physically located inside the my-multi folder on disk.

I have shared the project (created a git repo in the my-multi folder). But when I modify files in either of the subprojects the changes are not seen be EGit - nothing happens when I try to commit.

EGit integration works fine with eg. maven multi-projects. Are there any reasons that it should not work with gradle multi projects?

In a maven multi-project in eclipse the submodules are nested inside the parent folder even though they are located flat next to the parent project. This makes it pretty easy to see where a change is located when opening the parent project.