Great story! Although 2 things: As LordOfTheFish said, Omega Squad already exists. And, about the grammar...... (Do not open the spoiler if you do not want to hear about it)

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Grammar notes: You only used capitals when they yelled when you should use them at the start of names, sentences, and places! Also, the quotation marks. Not much of a problem, but I noticed that sometimes, you did this: "*text*" yelled commander" *text*"
Correct way: "*text" yelled commander. "*text*"
Looks at the differences at the 'yelled commander' part.

But enough of my grammar gibberish ()! I never though of what would happen if a clone was captured....