Hi, I was following screenshot and after adding workflow
http://s3.amazonaws.com/heteroplasmy/heteroplasmy_information.html
Upon running it is mentioning that
/mnt/galaxyIndices/hg19/bwa/base/hg19
which does not exist .. i have confirmed that after login to instance
directly.
due to this reason it is unable to pick FASTQ file.
any hint ?
Also. When we newly create cloud man from AMI dated 22nd March 2011,
Does
it make sense to update Galxy via admin ? or just run it with out
update..
BR
Zeeshan

The mentioned file does not exist but there should be a group of files
that
start with that particular name. The concept is described on the
general
Galaxy setup page: http://wiki.g2.bx.psu.edu/Admin/NGS%20Local%20Setup
With that, could you describe you issue a bit better? I'm not sure
what you
mean by not being able to 'pick' a FASTQ file.
At this point, this is actually no advisable because the process is
likely
to fail (there have been some structural changes to how Galaxy in
installed
that the automated process does not cover quite yet). However, a new
image
is being prepared with an updated Galaxy and should be available soon.