0. waveslim: Wavelet methods for 1/2/3D- Basic wavelet routines for the processing/analysis/inference of time series, images and 3D arrays. The code provided here is based on Percival and Walden (2000); Gencay, Selcuk and Whitcher (2001); Kingsbury (1999); and Selesnick (200?).

3. RMacoqui- RMacoqui develops a probability procedure for the identification of chorotypes, i.e. distribution patterns shared by a group of species, which can be operatively identified within an area (Baroni-Urbani et al., 1978).

4. libamtrack- This package is the R interface to the open-source, ANSI C library libamtrack (http://libamtrack.dkfz.org). It provides computational routines for research in proton and ion beam therapy.

5. UCMINF - unconstrained optimization- UCMINF - An algoriithm for unconstrained non-linear optimization
The algorithm is of quasi-Newton type with BFGS updating of the inverse Hessian and soft line search with a trust region type monitoring of the input to the line search algorithm.

8. Optimist- This project will comprise different approaches in global and discrete optimization, e.g. a simple evolutionary algorithm for global problems, some 'knapsack' procedures and discrete optimization routines, and a collection of optimization test routines.

13. Evolution simulation and classification- After measuring gene frequencies of modern populations that have a common ancestor, we estimate ancestral allele frequency and selection state for each gene. A bayesian model is used and verified using the included simulator.