Origins Is still part of film cannon.Now with the time traveling events of Days of future Past may retconning elements of It as well as Last Stand.

If Deadpool Is ever made it presents a problem since they still want Deadpool as part of X-Men film series.And they want to reboot the character and break the fourth wall to mock
the version of Deadpool seen In Origins.

As for bond yes Casino Royale was a reboot.In past whenever a new actor took over It just contunied with a loose contunity and series just continued.With Daniel Craig that was thrown out the window.Granted now with Skyfall they are trying to blurr that line.
Still In past you could see all the various actors In loose contunity as a timeless character.You can't do that anymore.