... I'd like to query a JSON output for VEP using the REST API.
I have the following code in python 3, can anyone tell me where I'm going wrong? I'm getting a HTTP 400 error.
import json
import requests
import sys
enter code here`with open('sample.tsv','r') as file:
for line in fil ...

... I have a VCF file v4.1 and I'm trying to extract the type of variations (Substitution, Insertion, Silent, Intergenic, etc.) from it. If there are multiple possibilities, how would I annotate the most deleterious possibility?
Apart from that, I'm trying to find the number of reads supporting the var ...