# Rename this file to CONFIG, and edit its contents.
# Will be included by the makefile in qualeval/qualeval.mk
# Uses makefile syntax, so you can use $(wildcard) and $(patsubst)
# and similar string-manipulating functions.
# Number of threads to use for multi-threaded sub-processes (Note that
# you can use -j to make asmeval run multiple sub-processes
# simultaneously)
THREADS := 1
# Add the name of the file containing the genome sequence here
GENOME := xxx.fasta
# The estimated genome size (used for calculating N50 etc)
GENOMESIZE := 6e8
# import SFF and Illumina data (fastq format).
# SFFs should end in .sff, Illumina should end in {1,2}.txt
SFFS :=
FASTQPE :=
FASTQMP :=
RNASEQ :=
# EST-data or full-lenght transcripts. Will be mapped with BLAT.
ESTS :=
# BAC ends or similar, also mapped with BLAT.
BACS :=
# Mitochondrion sequence, or contigous regions of the genome.
MITOCH :=
# Proteomes from related species, or other peptide sequences.
PROT :=
# End of configuration.