Compare genome with taxonomic clades

Compare custom genome sets

Find unusual domains relative to custom sets of genomes.

Compare this genome with an existing set: All genomes, Eukaryotes, Eubacteria or Archebacteria.
Compare this genome with a custom set: The custom set will be used if 'Custom set 1' is selected for the 'Genome set' field. Compare one set of genomes with another set: If 'Both Custom' is selected for the 'Genome set' field then, two custom sets will be compared.
The custom set format is a comma-separated list of two-character genome codes. Generate custom lists of genome codes

Unusual domains

The domains are sorted on the deviation and log ratio. The top of the list shows superfamilies/families which are over-represented, and the bottom of the list shows superfamilies/families which are under-represented. Percent - percentage of the selected genome which belongs to the given superfamily/family Average - average in the other genomes to which the first is being compared Deviation - difference between the percent and average Log Ratio - logarithm of the ratio of the two numbers (plus a constant)