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Does VUE pass the clicked hyperlinks in the sheet to the shell?
What I would want to do is when a hyperlink is clicked in a VUE sheet or graphic I want to pass it to a helper app the helper app would then do some modifications to this URL and pass it to the target app?
Is this possible in VUE?

If you're looking at the source, take a look at tufts.Util specifically openURL(String url) and its platform implementations openURL_Mac _Unix _Windows, here you'll find where the pass off is made to the OS and you can hook it and do something else. If you make a change that you feel may be useful for other users consider contributing it back.