This job generates the annotation data-files. The annotations are pulled from:
(1) manually annotated files from monarch-github-repo (created with Phenote)
(2) Orphanet (orphadata.org)
One file is generated which contains only the contents of the monarch-data. (Phenote-annotated by HPO-team) Note that negative annotations are separated in this step!
In the second file the datasets (phenotype-commons and orphanet) are merged and integrated into one big file.
BEFORE downloading: see http://human-phenotype-ontology.github.io/license.html
These files are then offered to all users as the build artifact.
Old builds are available on Github.