In article <Pine.SGI.3.90.950112225826.13608D-100000 at cb-sgi.massey.ac.nz>,
R.Faber at massey.ac.nz (Rick Faber) wrote:
> Anyone know of a 'automated' way of doing superpositions of different
> molecules other than using O? I'd just like to save a little of the
> drugery of figuring which C-alphas should correspond to which in
> several different domains/molecules. Someone must have written code to
> do this somewhere..... Any hints would be appreciated.
>> cheers,
> Rick
>>R.Faber at massey.ac.NZ
You might want to check the article "Classification of Protein folds"
C. Orengo, Curr. Opinion Struct. Biol., 4:429-440 which discusses several
algorithms suitable for this task.
Greetings
--
Boris <steipe at lmb.uni-muenchen.de>