Oryza sativa Japonica Group vs Brassica napus LastZ Results

Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Brassica napus (Brassica napus, AST_PRJEB5043_v1) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release . Oryza sativa Japonica Group was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 311,135

Genome coverage (bp)

Coding exon coverage (bp)

Oryza sativa Japonica Group

Uncovered: 337,406,533 out of 375,049,285Covered: 37,642,752 out of 375,049,285

Uncovered: 14,357,048 out of 34,403,043Matches: 12,474,343 out of 34,403,043Mismatches: 6,954,670 out of 34,403,043Insertions: 616,982 out of 34,403,043

Brassica napus

Uncovered: 761,084,360 out of 848,200,303Covered: 87,115,943 out of 848,200,303

Uncovered: 43,320,793 out of 101,157,402Matches: 38,081,154 out of 101,157,402Mismatches: 18,702,347 out of 101,157,402Insertions: 1,053,108 out of 101,157,402