So after resolving my issue below (Wouldn't turn on since the Keyboard plug unplugged even though case was closed)

When that happened the computer loaded fine but after the keyboard unplugged I had to turn the computer off by just unplugging it (Battery was out at the time)

Now when I fixed the problem I get the "Question Mark Folder" and the DVD disc utility won't recognize my Hard Drive even though I can hear the drive running (I Have the case opened so I can hear and feel it spinning) It won't load Safe Mode or Single User mode it just leaves the screen gray but with a mouse pointer. It also won't recognize or boot external USB hard drives (One from my Mac but in an external shell) but it does recognize my DVD player. At one point, while loaded with the startup DVD to the disc Utility I unplugged and replugged my Hard Drive and everything restarted and booted to my desktop (which would make me think my Hard Drive isn't broken) I've tried zapping the PRAM, Holding the power for 5 seconds and even starting with the PRAM unplugged, but always to the Question Mark Folder.

Thought I fixed the hard part with the GPU but this seems more frustrating, others have had fixes from unplugging and replugging everything to hitting the Hard Drive (Something I'd rather not try since it sounds like its working fine)