Updates/Corrections since publication

(10/07/2012) The yeast2probe environment became protected. Minor changes to the RemoveProbes.R function. Thanks to Guang You Duan for pointing this out.

(11/06/2010) Paper updated to reflect the new array express download format. Thanks to Saeed Salem for pointing this out.

Suggestions, bugs, queries

If you have any questions or queries about the above material, then feel free to contact me at csgillespie@gmail.com Also if you think of any other techniques that could be included in the paper, then please send in your suggestions.

Building the paper from source

The paper was originally constructed in Sweave (thanks to a referees comment!). It has now been ported over to knitr. To build the pdf of the paper, just run the following commands (this assumes you have the necessary cran and Bioconductor libraries and have downloaded all files from github):