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This post presents the video of a talk that I presented in July 2012 at Melbourne R Users on using knitr, R Markdown, and R Studio to perform reproducible analysis. I also provide links to a github repository where the R markdown examples can be examin...

Welcome to this demo of how R code and results can be combined into an HTML report. This entire blogpost was generated by using a combination of R, knitr and markdown. Beforehand, make sure you have the following libraries installed (latest version); knitr markdown ggplot2 (to run the example script) Read more »

The knitr package provides an easy way to embed R code in a Jekyll-Bootstrap blog post. The only required input is an R Markdown source file. The name of the source file used to generate this post is 2012-07-03-knitr-jekyll.Rmd, available here. Steps taken to build this post are as follows:
Step 1
Create a Jekyll-Boostrap blog if...

When I am working in new institutions and I am asking: “Do you have a document management system?” I often get the answer:”Yap, we are using folders” … OKAY. Making analysis, developing applications and keeping an eye on code, data and applications make this even harder as it has to be. Of course not many

Seeing as more people were interested in how I created my slides for the R conference than what was actually on them, I posted my source and commands to github. I used knitr with Rmarkdown source to convert to markdown that went into pandoc to create beamer slide. Enjoy! https://gist.github.com/2955183

Arguably, knitr (CRAN link) is the most outstanding R package of this year and its creator, Yihui Xie is the star of the useR! conference 2012. This is because the ease of use comparing to Sweave for making reproducible report. Integration of knitR and R Studio has made reproducible research much more convenience, intuitive and easier to

The following post documents the steps I needed to take in order to convert a project using Sweave LaTeX into one using knitr LaTeX. Additional Resources It is fairly straightforward to convert a document from Sweave LaTeX to knitr LaTeX. Yihui Xie on...

The following post shows how to manually convert a Sweave LaTeX document into a knitr R Markdown document. The post (1) reviews many of the required changes; (2) provides an example of a document converted to R Markdown format based on an analysis of Winter Olympic Medal data up to and including 2006; and (3) discusses the pros...

I just noticed that Markus Gesmann has a nice post on using RStudio, knitr, Pandoc, and Slidy to create slideshows. After my recent attempt to use deck.rb to turn a Markdown/knitr file into a deck.js presentation I caved in and also decided to go with ...