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We used RNA-seq to generate the transcriptional profile of wild type and mol1-1 mutants in the second internode of the inflorescence stem of 15 to 20 cm tall Arabidopsis. We then used statistical analysis to identify differentially expressed genes that potentially contribute to the mol1-1 mutant phenotype. RNA from three replicates each of WT and mol1-1 mutants were sequenced and differentially expressed genes were identified.