2Department of Clinical Microbiology, Rigshospitalet, University hospital
of Copenhagen, Copenhagen, Denmark 3Department of International Health,
Immunology and Microbiology, University of Copenhagen, Denmark,

*Department of Medicine, John A. Burns School of Medicine, University of Hawaii,
Honolulu, HI
†Department of Pathology, John A. Burns School of Medicine, University of
Hawaii, Honolulu, HI
‡The Queen’s Medical Center, Honolulu, HI §Diagnostic Services,
Inc, Aiea, HI
∥Native Hawaiian Health, John A. Burns School of Medicine, University of Hawaii,
Honolulu, HI

RipSeq Mixed is an online software tool for rapid bacterial identification, with
focus on analyzing mixed clinical samples. Through the use of advanced algorithms,
we remove the need for manual isolation and re-cultivation of colonies from poly-microbial
samples prior to 16S rDNA sequencing. This makes direct sequencing relevant for
a broader range of clinical samples, including abscesses and pleural fluids.
Pathogenomix RipSeq Mixed (PDF)

RipSeq Single

DNA target sequencing is the prevailing method for accurate identification of human
pathogens. With the introduction of RipSeq Single and the already established RipSeq
Mixed, Isentio now makes RipSeq software the complete package for DNA target sequence
based identification.Pathogenomix RipSeq Single (PDF)

RipSeq NGS

Using our novel algorithms RipSeq will process your targeted NGS sequence file locally,
and reduce the information needed to upload by a factor of 1000:1, while still retaining
resolution and specificity. This means no lengthy file upload, and no costly big
data file storage. After upload, the cloud based RipSeq will analyze the uploaded
reads against any of our curated Ripseq DB databases - no matter the target. All
this in less than 5 minutes! Including reporting!Pathogenomix RipSeq NGS (PDF)

RipSeq Mixed Examples

RipSeq Mixed is a computer program able to read and interpret mixed chromatograms
containing up to three individual sequences (ref. JCM, Nov. 2009). Through the use
of advanced algorithms we remove the need for culture and manual separation of the
present bacteria prior to sequencing.Pathogenomix RipSeq Mixed Examples (PDF)

RipSeq Mixed handles InDels

RipSeq Mixed is an online application able to read and interpret mixed sequencing
chromatograms through the use of advanced algorithms. The RipSeq Mixed module can
automatically handle and identify indel copy variants in DNA sequences obtained
from pure bacterial isolates.Pathogenomix RipSeq Mixed InDels (PDF)