MK5 Microarray Data

These are the micro-array results of a differential gene expression
microarray experiments and the subsequent analysis steps performed on
them. The up/down- regulation ratio was obtained by
measuring WT cells against MK5 activated cells. See material and methods for technical
information as well as the data usage policy.

MK5 Proteome Analysis - Divided Values

Type II network, divided values.
Interestingly most of the proteins in the first 100 positions in this
table would occur in the
divided ranks table between position 100 and 200, indicating
a difference in emphasis between the two simulations but not in
the overall function. The fully annotated table, include Ensembl
gene identifiers and network values can be found in the supplementary
data.
Resetting the view coordinate localhost/Mk5/AffectedProteins/

Navigation/Query Panel:Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be

Legend:- Rank is the rank after comparing the two networks- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not. - http://analysis.yellowcouch.org/