MER136 (DF0000733)

Hits

Overview

As many TE entries match hundreds of thousands of instances in a given genome, it is difficult to provide
all matches via a web interface or as a multiple sequence alignment. In order to provide access to the matches,
the graphic below has been developed that presents the distribution of hits organized on a karyotype ideogram.
Hits are binned in 1 Mbp regions, with counts in each bin distinguished by colour and with bin sizes specific
to each model. When a region of the hit-distribution ideogram is clicked, the hits in that region will be
loaded below the karyotype ideogram. Each hit can be expanded to reveal the alignment between the hit
sequence and the model. A full listing of hits (but not alignments) for an entry may be retrieved from the
download page. All hits can
be download as a tab delimited file from here.

By default, the page represents non-redundant hits (hits for which this model is deemed to
fit the sequence better than any other Dfam model), but the image and hit lists can be
toggled to show redundant hit distributions (including hits that score higher against other models). The
ideogram can also be toggled to reveal the canonical
Giemsa stain banding of the chromosomes, providing a reference to positional context. It is important to
remember TEs split by more recently mobile TEs have not been aggregated, so older fragmented TEs may be
counted as multiple instances.

Non-redundant hits

Hit Count (per Mb):

: 0

: 1-1

: 2-2

: 3-3

: 4-4

: 5-5

: 6-6

: 7-7

: 8-8

All hits

Hit Count (per Mb):

: 0

: 1-1

: 2-2

: 3-3

: 4-4

: 5-5

: 6-6

: 7-7

: 8-8

Giemsa staining

or press k on your keyboard.

Hits for MER136

Sequence

bit score

E-value

Model

Alignment

strand

start

end

start

end

There are
34 non-redundant hits in Homo sapiens.

The total number of
hits is 40.

Please click on the image above to see detailed information about a specific chromosomal region.