Hi,
you could also have a look at
http://affycomp.biostat.jhsph.edu/
This provides a web-service comparing many different preprocessing
methods, using 14 different criteria. You can sort the methods
according to their performance in your "pet criterion".
The according paper is linked there as well.
Regards,
Winnie Wefelmeyer
Am 09.08.2005 um 13:42 schrieb Ingunn Berget:
> Hi
> This is more of a theory/litterature question than use of BioC.
>> I know there are many different methods for quality control and
> preprocessing of affymetrix data, some use the mismatch probes, others
> don't. Does anybody know about reviews or comparative studies that
> compare
> the different methods and how they perform on data. A quick view of the
> bioconductor packages indicate that there are at least 5 packages that
> can
> be used for preprocessing of affymetrix data, how much do they differ?
>>> Best regards
> Ingunn Berget
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