Medicago truncatula vs Brassica oleracea LastZ Results

Medicago truncatula (Medicago truncatula, MedtrA17_4.0) and Brassica oleracea (Brassica oleracea var. oleracea, BOL) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release . Medicago truncatula was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 243,824

Genome coverage (bp)

Coding exon coverage (bp)

Medicago truncatula

Uncovered: 365,933,168 out of 412,800,391Covered: 46,867,223 out of 412,800,391

Uncovered: 20,192,858 out of 50,132,764Matches: 19,670,985 out of 50,132,764Mismatches: 9,395,116 out of 50,132,764Insertions: 873,805 out of 50,132,764

Brassica oleracea var. oleracea

Uncovered: 427,610,131 out of 488,622,507Covered: 61,012,376 out of 488,622,507

Uncovered: 23,448,172 out of 61,722,508Matches: 25,572,879 out of 61,722,508Mismatches: 11,851,443 out of 61,722,508Insertions: 850,014 out of 61,722,508