The introduction of Nile perch (Lates niloticus) to Lake Victoria after 1954 severely upset the lake's ecosystem. By the late 1970s, the perch's population was approaching carrying capacity, and the smaller cichlids were fair game for the huge carnivorousLates, the Nile tilapia (Oreochromis niloticus), an adaptable generalist, was also introduced and competed with the often specialized endemic cichlids of the lake for food and other resources. When the Nile perch stocks finally declined again in the late 1980s, an estimated 200 Haplochrominispecies (mostly Haplochromis) may have become extinct – many of these had only been scientifically described a few years before their demise, and additional ones were only known or suspected to exist, but never properly studied or described.[2]

While the stocks of those species that survived are in many cases recovering, the lake ecosystem has changed irrevocably. The entire trophic web has been observed to be upset. But still, evolution runs its course: those Lake Victoria Haplochromis species that still exist are in many cases adapting to new food sources, and in time, speciation is likely to set in and produce a new adaptive radiation of these fishes. Until then, however, the ecological balance of the lake is still on the brink, and many of the cichlids that survived the peak population of Lates are still critically endangered and close to extinction.[3]

Haplochromis is the type genus of the tribeHaplochromini. Most of the tribe's members were at one time or another included in the present genus, but in many cases this was only temporary. Around the year 1900, as well 100 years later, the trend was to split up the genus; especially in the mid-20th century, on the other hand, most authors lumped any and all Haplochromini that were not conspicuously distinct in the type genus.[4]

While a number of African Rift Valley ciclids are certainly very close relatives of H. obliquidens, the type species of the present genus, it is not very clear where to draw the boundary of Haplochromis with regard to its relatives. Still, several genera are now recognized as distinct by many authors and scientific databases, such as FishBase (see below); in particular the Haplochromini from Lake Tanganyika and Lake Malawi are usually removed form Haplochromis. The genus delimitation in the entire tribe remains badly resolved, however, and further changes in taxonomy are likely in the future. In particular, between Haplochromis, Astatotilapia and Thoracochromis, species have been moved to and fro over the years. The habit of Pseudocrenilabrinae to hybridize is hampering molecular phylogenetic studies based on mtDNA alone, while trophicmorphs of a single species may appear to be distinct "species" if they are not phylogenetically studied. Several proposed genera are again included in Haplochromis at present, but it cannot be ruled out that some of these will eventually be recognized as valid again.[5]

These populations are typically referred to by the names they have in the aquarium fish trade. A number of them are likely to represent undescribed distinct species; others might just be subspecies or color morphs. Whether they all belong in Haplochromis is, of course, doubtful. Some of these populations are:

Among other genera of Haplochromini that were formerly included here, many are small or monotypic. The distinctness of these is highly doubtful, as they may just be distinct lineages of Haplochromis or other haplochromines. That nonwithstanding, Haplochromini genera to which some former "Haplochromis" have been removed are in particular:[9]

With all the taxonomic and systematic confusion affecting Haplochromis and its allies, it is hardly surprising that the genus has a large number of junior synonyms. Most referred to small or monotypic genera that were once considered distinct, but are now included in Haplochromis again, if only to wait for a major review of their status. Synonyms are: