A sub-selection of 85 relevant gray matter regions over the labels provided by the selected atlas is used for the volumetry and cortical thickness analysis, in order to assure sensible outputs and comparability of analysis.

Preferred DICOM to Nifti conversion tool.The selected tool will be tried first to convert DICOM to nifti. If the conversion fails, the other options will be tried sequentially until a successful conversion.

Mrtrix(Default)

DCM2nii

diffunpack

Brain Atlas for parcellation.Template and labeled atlas used to parcellate grey matter regions.