http://schlockmercenary.com/d/20000629.html - "SFX: Brad out of breathe."; s/breathe/breath/ . For that matter, that line doesn't describe any visible feature of the strip, since Brad's dialogue in the next line includes his "(pant)" and "(gasp)".

"Indeed, Suicide would be quite simple., you just need to throw one switch for me, and i'll do the rest."
- change ", Suicide" to either ", suicide" or ". Suicide";
- change "., you" to ". You" or ", you" or "; you";
- capitalize "i'll".

For this type of issue, you might consider doing an archive-wide search and replace for "i'm", "i'll", "i've", "i", and the proper names of characters in lowercase, assuming you have the transcripts and strips in a form conducive to an archive-wide search and replace.

http://schlockmercenary.com/d/20000702.html - The sound effect of Keyvn taking down Shodan differs between the strip and the transcript; the strip has it as "THROOOOOOOOWWHAMMO", while the transcript has it as "THROOOOOOOOWHAMMMO" (one more M and one less W").

http://schlockmercenary.com/d/20000704.html - Schlock's last sentence in the strip appears to end with an exclamation mark, but the transcript just has a period. (Either that, or the period in the strip has some serious blurring.)

http://schlockmercenary.com/d/20000707.html - transcript error: "It reduces the subject to standing gravitic waves, and then transports then, and itself [...]"; change the second "then" to "them". Correct in the strip.

Edit: OK, I won't post any more transcript issues in this topic, only issues in the strip.

http://www.schlockmercenary.com/d/20010308.html - In the second panel, the phrase "I'm the helpful, Emergency Medical Hologram" feels very awkward with the comma; I believe it would flow much more smoothly without that comma: "I'm the helpful Emergency Medical Hologram".

http://www.schlockmercenary.com/d/20030825.html - "We had to grow you a new body, afterwards." feels awkward with the comma; I think it would flow more smoothly without. (The comma would make sense with "Afterwards, ...", but doesn't with "..., afterwards.")

Shoot. I wish this thread was here 3 years ago. I found quite a few back when I was typing them into the MSS database, but I've forgotten them all by now. (I entered them in the database exactly as they were in the original.)