Version of

Edited into

Wall Street: Money Never Sleeps (2010)
Footage of "Zurich" (really Prague) is reused. The blue streetcars have been re-colored red, and moving cars have been added to the scene. The parked cars are all exactly the same.

Spin-off

The Bourne Conspiracy (2008)
(Video Game)
The game is also a loose version of the first film and mildly based on the book.

Alex Rider: Operation Stormbreaker (2006)
Both films feature a car chase in a Mini car with Oakenfold's "Ready Steady Go" as the soundtrack. TBI features an old Mini, SB a new one.

Getaway: Episode #16.39 (2007)
(TV Episode)
In Jason Dundas's story on the French Riviera, he mentions that the village of Ville France, Monaco, has been the location for several movies, including The Bourne Identity.

The New Adventures of Old Christine: Rage Against the Christine (2008)
(TV Episode)
The gang plays a celebrity guessing game, and Richard gives the clue 'Bourne Identity', which in a backwards way lead New Christine to the correct answer 'Tom Cruise, which in turn Old Christine objects to, since he isn't in that movie.

Nostalgia Critic: Godzilla (2008)
(TV Episode)
Nostalgia Critic: "This isn't like The Bourne Identity where he can just blend in to his surroundings."