Oryza sativa Japonica Group vs Chondrus crispus LastZ Results

Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Chondrus crispus (Chondrus crispus, ASM35022v2) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release . Oryza sativa Japonica Group was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 9,239

Genome coverage (bp)

Coding exon coverage (bp)

Oryza sativa Japonica Group

Uncovered: 373,084,160 out of 375,049,285Covered: 1,965,125 out of 375,049,285

Uncovered: 32,825,863 out of 34,403,043Matches: 990,354 out of 34,403,043Mismatches: 541,654 out of 34,403,043Insertions: 45,172 out of 34,403,043

Chondrus crispus

Uncovered: 103,864,766 out of 104,980,420Covered: 1,115,654 out of 104,980,420

Uncovered: 9,311,410 out of 10,311,317Matches: 622,177 out of 10,311,317Mismatches: 349,377 out of 10,311,317Insertions: 28,353 out of 10,311,317