"We’re not going to stop using algorithms. They’re too useful. But we need to be more aware of the algorithmic perversity that’s creeping into our lives. The short-term fit of a dating match or a Web page doesn’t measure the long-term value it may hold. Statistically likely does not mean correct, or just, or fair. .... It’s when people deviate from what we predict they’ll do that they prove they are individuals, set apart from all others of the human type."

“Several said the government is making a crucial mistake by rating performance[of dialysis clinics] by lab tests, not outcomes or measures that reflect patients’ quality of life. ‘Mortality, morbidity, and infection—that’s the bottom line,’ said [a former dialysis-clinic owner]. ‘It’s easy to adjust the labs. What good is it if you have good numbers, but everyone’s dying or in the hospital?’”

"If you think you already know which theory is right, you are either a major scientist who has been concealing a vast mountain of unpublished research from the rest of the world, or else you are confusing wishful thinking with knowledge."

Forsooth

“The mechanics of the ghostwriter’s job are fairly simple, [an anonymous ghostwriter] says. Early on, a medical-communications agency and its pharmaceutical-company sponsors will agree on a title for an article and a potential author, usually an academic physician with a reputation as a ‘thought leader.’ The agency will ask the thought leader to ’author’ the article, sometimes in exchange for a fee. The ghostwriter will write the article, or perhaps an extended outline containing the message the company wants to transmit, and send it along to the physician, who may make some changes or simply sign it as written and submit it to a journal, usually scrubbed of any mention of the ghostwriter, the agency, or the pharmaceutical company. [The ghostwriter] says he rarely even sees the published articles he writes.”

Forsooths from the RRS News

The following Forsooths are from the December 2010 issue of the RRS News

SUPPER OVER:You always knew they
were a rubbish present-now here's some
evidence that you really shouldn't buy
slippers for grandma. In a US study 52 per
cent of elderly people who fell at home
were barefoot or wearing slippers at the
time. 'Therefore, older people should
wear shoes at home whenever possible to
minimize their risk of falling,'said study
author Dr Marian Hannan.

Metro

24 June 2010

Temperatures will be near average at best.

BBC Radio weather forecast

28 August 2010

Submitted by Laurie Snell

Placebo contents

A placebo (Latin: I shall please) is a sham or simulated medical intervention that can produce a (perceived or actual) improvement, called a placebo effect.

[The origin for the term placebo] dates back to a Latin translation of the Bible by Jerome. It was first used in a medicinal context in the 18th century. In 1785 it was defined as a "commonplace method or medicine" and in 1811 it was defined as "any medicine adapted more to please than to benefit the patient," sometimes with a derogatory implication.

Nowadays, so entrenched is the necessity of a comparison to a placebo, any medical treatment trial without a control arm containing a placebo would be viewed skeptically both statistically and medicinally. But, consider the provocative title of Golomb: “What's in Placebos: Who Knows? Analysis of Randomized, Controlled Trials.” Surprisingly,

No regulations govern placebo composition. The composition of placebos can influence trial outcomes and merits reporting.

The study looked at four prestigious journals: New England Journal of Medicine, JAMA, The Lancet and Annals of Internal Medicine. Included were 176 journal articles:

Most studies did not disclose the composition of the study placebo. Disclosure was less common for pills than for injections and other treatments (8.2% vs. 26.7%; P = 0.002).

Conclusion: Placebos were seldom described in randomized, controlled trials of pills or capsules. Because the nature of the placebo can influence trial outcomes, placebo formulation should be disclosed in reports of placebo-controlled trials.

Discussion

1. Golomb cites the following example: “For instance, olive oil and corn oil have been used as the placebo in trials of cholesterol-lowering drugs.” Under the assumption that these oils might be beneficial, rather than inert, why does this understate the positive benefit of the treatment?

2. Golomb cites another example where a lactose placebo was used in a gastrointestinal trial. Under the assumption that the lactose was harmful, why does this overstate the positive benefit of the treatment?

3. Why is modern communication, e.g., the internet, facebook, etc., a cause for concern when conducting a randomized control trial (with or without a placebo arm)?

4. Golomb further alleges, “failure to describe placebo ingredients breaches basic scientific standards of rigor.” Why would describing the placebo ingredients “disadvantage” the “publication prospects” of the researchers and “disadvantage” the publisher of the particular journal?

5. Medicine is not the only area of endeavor which should require a placebo arm. Name some others.

6. For the record, the term nocebo (I will harm) was coined in 1961 and refers to the negative effects of a sham or simulated medical intervention. An example sometimes given is a patient dying of fright due to being bitten by a non-poisonous snake. Give examples of some other nocebos.

7. Why would prayer be considered a placebo? Why would prayer be considered a nocebo? A treatment?

8. Exorcism has been in the news lately. Is exorcism as a treatment, a placebo or a nocebo?

9. Faith healing is always in the news. What distinguishes faith healing from exorcism from prayer? That is, why is prayer more commonly acceptable than either of the other two?

Research is slow

The wheels of research machinery turn slowly. A recent article in the New York Times highlights some of the delays in obtaining data for a promising new drug for prevention of AIDS.

Last week, a clinical trial showed that taking Truvada, a pill combining two drugs, once a day would greatly reduce a gay man’s chances of getting infected with the dangerous virus. Although confirmatory studies are still needed, the practice — called “pre-exposure prophylaxis,” or “prep” — will, in theory, also protect sex workers, needle sharers, wives of infected men, prison inmates and anyone else at risk.

Truvada is not a new drug, and indications of its promise and potential were known years ago. So why has it taken so long to obtain this data?

The delay turns out to be a combination of scientific caution and the fiery politics of AIDS. While a medical advance can be made by a momentary flash of inspiration or luck — as legendarily happened with penicillin — proving that it works can take forever. And that is particularly true with AIDS, a disease surrounded by visceral fears, longstanding prejudices and the potential for huge profits.

Part of the problem has to do with the nature of prevention research.

Giving powerful drugs to healthy people is different from giving them to the desperately ill. No doctor would give cancer drugs to a healthy person. Prophylaxis is common with, for example, malaria drugs for travelers making brief sojourns in the tropics. But a drug to be taken all one’s life — or at least for all of one’s sex life — must be very safe.

There is a legal barrier to prevention research as well.

Another factor is that not every drug company wants to see its best treatment drugs, on which it earns billions of dollars, tested for prevention. Dying patients accept unpleasant side effects; healthy ones might sue.

And there were political pressures. AIDS activist groups stopped some earlier trials of Truvada.

At the 2004 International AIDS Conference in Bangkok, the Paris chapter of the AIDS activist group Act-Up unexpectedly attacked Gilead Sciences’ booth, spraying it with fake blood and accusing the company of experimenting on poor people. As Dr. Jaffe tells it, French activists “played the anti-U.S. card in Francophone countries” and stirred up sex workers’ unions in Cambodia, eventually leading the Cameroonian and Cambodian governments to stop their trials. Nigeria’s stopped for other reasons, though many Nigerians were hostile to drug companies because of rumors that polio vaccine was an anti-Muslim plot and because Pfizer had tested a new antibiotic on children with meningitis. “If not for this misplaced activism, we might have had an answer five years earlier,” Dr. Jaffe said.

Another scientists sees the activism differently.

Dr. Grant saw the same struggle differently. The activists were disruptive, he said, but also “raised significant questions” about whether participants would be protected from side effects and about who, if anyone, would pay for lifelong treatment if participants did eventually get AIDS. One result, he said, was that protocols were improved and more countries added: South Africa, Brazil, Peru, Ecuador, Thailand. But more important, he said, was the emergence of the two agencies that now pay for treatment in poor countries, the Global Fund to Fight AIDS, Tuberculosis and Malaria, and the President’s Emergency Plan for AIDS Relief. It took until about 2005 for most poor countries to take advantage of that aid.

Questions

1. Does our legal system make it too easy for research participants to sue? What would be the consequences, both positive and negative, if such suits were barred or at least made more difficult to process?

2. Do you view the involvement of the AIDS activist group, Act-Up, as a positive or negative influence on research?

3. What safeguards are needed for clinical trials that are conducted in third world countries?

Submitted by Steve Simon

Statistics from the Victorian Era

A recent effort by Google allows a statistical analysis of the Victorian era.

The titles of every British book published in English in and around the 19th century — 1,681,161, to be exact — are being electronically scoured for key words and phrases that might offer fresh insight into the minds of the Victorians.

The research was made possible by Google, a fact that makes some scholars uneasy.

Some scholars are wary of the control an enterprise like Google can exert over digital information. Google’s plan to create a voluminous online library and store has raised alarms about a potential monopoly over digital books and the hefty pricing that might follow.

Google is trying to avoid any controversy.

But Jon Orwant, the engineering manager for Google Books, Magazines and Patents, said the plan was to make collections and searching tools available to libraries and scholars free. “That’s something we absolutely will do, and no, it’s not going to cost anything,” he said.

Questions

1. What are some of the limitations to the use of word counts.

2. What other applications besides historical studies could benefit from this database?