rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Title : new
Usage : my $obj = Bio::SearchIO::Result::hmmpfam->new();
Function: Builds a new Bio::SearchIO::Result::hmmpfam object
Returns : Bio::SearchIO::Result::hmmpfam
Args : -chunk => [Bio::Root::IO, $start, $end] (required if no -parent)
-parent => Bio::PullParserI object (required if no -chunk)
-parameters => hash ref of search parameters (key => value), optional
-statistics => hash ref of search statistics (key => value), optional
where the array ref provided to -chunk contains an IO object
for a filehandle to something representing the raw data of the
result, and $start and $end define the tell() position within the
filehandle that the result data starts and ends (optional; defaults
to start and end of the entire thing described by the filehandle)

Title : next_hit
Usage : while( $hit = $result->next_hit()) { ... }
Function: Returns the next available Hit object, representing potential
matches between the query and various entities from the database.
Returns : a Bio::Search::Hit::HitI object or undef if there are no more.
Args : none

Title : sort_hits
Usage : $result->sort_hits('<score')
Function : Sorts the hits so that they come out in the desired order when
hits() or next_hit() is called.
Returns : n/a
Args : A coderef for the sort function. See the documentation on the Perl
sort() function for guidelines on writing sort functions.
You will be sorting array references, not HitI objects. The
references contain name as element 0, description as element 1,
score as element 2, significance as element 3 and number of hsps
as element 4.
By default the sort order is ascending significance value (ie.
most significant hits first).
Note : To access the special variables $a and $b used by the Perl sort()
function the user function must access
Bio::Search::Result::HmmpfamResult namespace.
For example, use :
$result->sort_hits(
sub{$Bio::Search::Result::HmmpfamResult::a->[2]
<=>
$Bio::Search::Result::HmmpfamResult::b->[2]});
NOT $result->sort_hits($a->[2] <=> $b->[2]);