The original publication is available at http://journals.plos.org/plosbiology

Article

It is widely recognized that we are entering an extinction event on a scale approaching the mass extinctions seen in the
fossil record. Present-day rates of extinction are estimated to be several orders of magnitude greater than background rates
and are projected to increase further if current trends continue. In vertebrates, species traits, such as body size, fecundity,
and geographic range, are important predictors of vulnerability. Although plants are the basis for life on Earth, our
knowledge of plant extinctions and vulnerabilities is lagging. Here, we disentangle the underlying drivers of extinction risk
in plants, focusing on the Cape of South Africa, a global biodiversity hotspot. By comparing Red List data for the British and
South African floras, we demonstrate that the taxonomic distribution of extinction risk differs significantly between regions,
inconsistent with a simple, trait-based model of extinction. Using a comprehensive phylogenetic tree for the Cape, we
reveal a phylogenetic signal in the distribution of plant extinction risks but show that the most threatened species cluster
within short branches at the tips of the phylogeny—opposite to trends in mammals. From analyzing the distribution of
threatened species across 11 exemplar clades, we suggest that mode of speciation best explains the unusual phylogenetic
structure of extinction risks in plants of the Cape. Our results demonstrate that explanations for elevated extinction risk in
plants of the Cape flora differ dramatically from those recognized for vertebrates. In the Cape, extinction risk is higher for
young and fast-evolving plant lineages and cannot be explained by correlations with simple biological traits. Critically, we
find that the most vulnerable plant species are nonetheless marching towards extinction at a more rapid pace but,
surprisingly, independently from anthropogenic effects. Our results have important implications for conservation priorities
and cast doubts on the utility of current Red List criteria for plants in regions such as the Cape, where speciation has been
rapid, if our aim is to maximize the preservation of the tree-of-life.