Microbial abundance, activity and population genomic profiling with mOTUs2

The source code of the mOTU profiler is available on GitHub. Installation of the mOTU profiler and its dependencies can be performed manually using the conda package manager or by downloading the docker image.

Installation with Conda

The mOTU profiler and all its dependencies can be installed with Conda using only a single command:

conda install -c bioconda motus

For installation via the conda system, there is currently a known issue relating to the installation of SAMtools. In case you encounter problems with the conda installation, please install mOTUs2 via GitHub (see below).

Manual Installation

The alternative to Conda is the installation of the mOTU profiler and its dependencies by hand.