0. ROI - R Optimization Infrastructure- The project ROI offers an infrastructure package for optimization. Its aim is to facilitate the usage of different mixed integer programming (MIP) solvers by providing a single interface.

1. rgl: 3D visualization support- rgl is a 3D visualization system based on OpenGL. It provides a medium to high level interface for use in R, currently modelled on classic R graphics, with extensions to allow for interaction.

7. Eagle for Genome-Wide Association Mappin- The Eagle package is an implementation of multiple-locus association mapping on a genome-wide scale. It can handle inbred or outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer.

9. grainscape- Create grains of connectivity and minimum planar graph models to calculate effective distances for landscape connectivity at multiple scales.
**Development of this package has moved to GitHub (https://achubaty.github.io/grainscape).**

11. Quasi-likelihood parameter estimation- The package provides methods for parameter estimation for statistical models that can be simulated. We follow a quasi-likelihood approach to estimate the unknown parameter by the root of the so-called quasi-score estimating function.

12. SPRINT: Simple Parallel R INTerface- SPRINT is a Simple Parallel R INTerface to High Performance Computing (HPC) that enables biologists to run statistical analysis scripts using R in parallel on HPC clusters. It consists of an HPC harness and a library of parallelized R functions.

15. seriation - Infrastructure for seriation- Infrastructure for seriation with an implementation of several seriation/sequencing techniques to reorder matrices, dissimilarity matrices, and dendrograms. Seriation is now maintained on githup at http://github.com/mhahsler/seriation

16. factorplot- factorplot provides numerical and graphical summaries of factor-level differences in GLMs. It produces all pairwise hypotheses tests with either the exact pairwise difference and variance or user-supplied quasi-variances or floating absolute risks.

18. Korean R Translation Repository- The R Documentation files are licensed under the GPL, version 2 or 3. This means that the pilot project to translate them into Korean has permission to reproduce them and translate them.