Nakov, T., J.D. Boyko, A.J. Alverson, and J.M. Beaulieu (2017). Models with unequal transition rates favor marine origins of cyanobacteria and photosynthetic eukaryotes. Proceedings of the National Academy of Sciences of the USA In press.

Beaulieu, J.M., and B.C. O'Meara (2017). Can we build it? Yes we can, but should we use it?: Assessing the quality and value of a very large phylogeny of campanulid angiosperms. American Journal of Botany, In press.

Lapiedra, O., D. Sol, S. Caranza, and J.M. Beaulieu. (2013). Behavioral changes and the adaptive diversification of pigeons and doves. Proceedings of the Royal Society B. 280:20122893. [mentioned as a Research Highlight in Nature (2013) 490:8]