This is a 2003 publication showing the relationship of the worlds populations by studying the crania. This paper says that both multiregional and the out of Africa scenario are possible from these results. As can be seen on the dendrogram, the Egyptian samples (Gizeh and Naqada) are on the North African twig along with the Nubians, which are themselves very close to the European cluster, which supports the Loring Brace study showing ancient Egyptians as being non-similar to Sub Saharan Africans. In fact a look at all the diagrams shows Hanihara grouping the ancient North Africans closer to west Eyurasian groups.

The only downer is that modern North Africans aren’t included on this.

I’ve added colour to the diagrams as they are a little hard to make out if you have poor sight. Sub Saharan is red (Somalis have a black dot inside) and Europeans are blue, North African samples are bright green, and South Asian are violet.

ABSTRACT In the present study, the frequency distributions of 20 discrete cranial traits in 70 major human
populations from around the world were analyzed. The principal-coordinate and neighbor-joining analyses of Smith’s mean measure of divergence (MMD), based on trait frequencies, indicate that 1) the clustering pattern is similar to those based on classic genetic markers, DNA polymorphisms, and craniometrics; 2) signiﬁcant interregional separation and intraregional diversity are present in Subsaharan Africans; 3) clinal relationships exist among regional groups; 4) intraregional discontinuity exists in some populations inhabiting peripheral or isolated areas. For example, the Ainu are the most distinct outliers of the East Asian populations. These patterns suggest that founder effects, genetic drift, isolation, and population structure are the primary causes of regional variation in discrete cranial traits. Our results are compatible with a single origin for modern humans as well as the multiregional model, similar to the results of Relethford and Harpending ([1994] Am. J. Phys. Anthropol. 95:249– 270). The results presented here provide additional measures of the morphological variation and diversiﬁcation of modern human populations.