I've been working on this book for weeks, with Clean and format HTML turned off. It's been working fine, leaving my code alone. I did a replace, which I've been doing all along without a problem, and it went through 20 files (400KB+) and removed every blank line!

It only removed them from the code, but they were there for a reason. I do not like any editor that presumes to change what I've typed, unless I've asked it to. As for pretty-print, my code was prettier before that thing screwed it all up.

Way back in the old days, when memory was really tight and everybody coded in Basic, magazines would print code without any spaces or line breaks. That's about what my files look like now.