There were a lot of psychological music experiments and models but there were few psychological rhythm experiments and models. There were a lot of physiological music experiments but there were few physiological music models. There were few physiological rhythm experiments but there was no physiological rhythm model. We proposed a physiological rhythm model to fill this gap. Twenty-two participants, 4 drum loops as stimuli, and electrocardiogram ECG were employed in this work. We designed an algorithm to map tempo, complexity, and energy into two heart rate variability HRV measures, the standard deviation of normal-to-normal heartbeats SDNN and the ratio of low- and high-frequency powers LF-HF; these two measures form the physiological valence-arousal plane. There were four major findings. Initially, simple and loud rhythms enhanced arousal. Secondly, the removal of fast and loud rhythms decreased arousal. Thirdly, fast rhythms increased valence. Finally, the removal of fast and quiet rhythms increased valence. Our work extended the psychological model to the physiological model and deepened the musical model into the rhythmic model. Moreover, this model could be the rules of automatic music generating systems.