Welcome to ipyrad, an interactive toolkit for assembly and analysis of
restriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) for
population genetic and phylogenetic studies.

In this documentation you can learn about the various features of ipyrad
(Features), the broader motivation behind its design
(Ethos), and access detailed Tutorials.
Several new Analysis tools are included with ipyrad,
and we are also building a large Cookbook with code for many
common downstream analyses.