general notes/Comments:

NCI Thesaurus (NCIt) is a widely recognized standard for biomedical coding and reference. It covers vocabulary for clinical care, translational and basic research, public information and administrative activities and is used by a broad variety of public and private partners both nationally and internationally.The scope of NCI is determined by the combined scope of its source vocabularies which include the following:

Original Files:

Identifiers

CODE: NCI code or subsource code

SAUI: not applicable

SCUI: NCI code or subsource code

SDUI: not applicable

Atoms (MRCONSO)

The term names and term types are extracted from the field tagged, "<P90...<ncicp:term-name>...lt;/ncicp:term-name><ncicp:term-group>...</ncicp:term-group>...</P90>" (FULL_SYN), unless otherwise noted.

Term type

Description

AB

Abbreviation

AD

Adjective

BN

Fully-specified drug brand name that can not be prescribed

CA2

ISO 3166-1 standard country code in alpha-2 (two-letter) format

CA3

ISO 3166-1 standard country code in alpha-3 (three-letter) format

CCN

Chemical code name

CCS

FIPS 10-4 country code

CSN

Chemical Structure Name

DN

Display name

FBD

Foreign brand name

HD

Hierarchical descriptor

OP

Obsolete preferred name

PT

Preferred name; extracted from field tagged <P108

SY

Synonym

Suppressibility

For term type OP, the suppressible value is "O" (obsolete). For all others, the value is "N" (not suppressible).

Attributes (MRSAT)

Attribute Name

Origin: OWL tag

ACCEPTED_THERAPEUTIC_USE_FOR

<P302 rdf:datatype="http://www.w3.org.../P302>

BIOCARTA_ID

<P216 rdf:datatype="http://www.w3.org.../P216>

CAS_REGISTRY

<P210 rdf:datatype="http://www.w3.org.../P210>

CHEBI_ID

<P368 rdf:datatype="http://www.w3.org.../P368>

CHEMICAL_FORMULA

<P350 rdf:datatype="http://www.w3.org.../P350>

CNU

'<P90...ncicp:term-group' field = CNU

DESIGN_NOTE

<P98 rdf:datatype="http://www.w3.org.../P98>

ENTREZGENE_ID

<P321 rdf:datatype="http://www.w3.org.../P321>

ESSENTIAL_AMINO_ACID

<P356 rdf:datatype="http://www.w3.org.../P356>

ESSENTIAL_FATTY_ACID

<P357 rdf:datatype="http://www.w3.org.../P357>

EXTENSIBLE_LIST

<P361 rdf:datatype="http://www.w3.org.../P361>

FDA_TABLE

<P317 rdf:datatype="http://www.w3.org.../P317>

FDA_UNII_CODE

<P319 rdf:datatype="http://www.w3.org.../P319>

GENEBANK_ACCESSION_NUMBER

<P102 rdf:datatype="http://www.w3.org.../P102>

GENE_ENCODES_PRODUCT

<P96 rdf:datatype="http://www.w3.org.../P96>

GO_ANNOTATION

<P211 rdf:datatype="http://www.w3.org.../P211>

HGNC_ID

<P369 rdf:datatype="http://www.w3.org.../P369>

HOMOLOGOUS_GENE

<P101 rdf:datatype="http://www.w3.org.../P101>

ICD-O-3_CODE

<P334 rdf:datatype="http://www.w3.org.../P334>

INFOODS

<P353 rdf:datatype="http://www.w3.org.../P353>

KEGG_ID

<P215 rdf:datatype="http://www.w3.org.../P215>

LEXICAL_TAG

'<P90...ncicp:term-group' = FB or BR

MACRONUTRIENT

<P360 rdf:datatype="http://www.w3.org.../P360>

MGI_ACCESSION_ID

<P332 rdf:datatype="http://www.w3.org.../P332>

MICRONUTRIENT

<P359 rdf:datatype="http://www.w3.org.../P359>

MIRBASE_ID

<P362 rdf:datatype="http://www.w3.org.../P362>

NCBI_TAXON_ID

<P331 rdf:datatype="http://www.w3.org.../P331>

NEOPLASTIC_STATUS

<P363 rdf:datatype="http://www.w3.org.../P363>

NICHD_HIERARCHY_TERM

<P371 rdf:datatype="http://www.w3.org.../P371>

NSC_CODE

<P175 rdf:datatype="http://www.w3.org.../P175>

NUTRIENT

<P358 rdf:datatype="http://www.w3.org.../P358>

OMIM_NUMBER

<P100 rdf:datatype="http://www.w3.org.../P100>

PDQ_CLOSED_TRIAL_SEARCH_ID

<P330 rdf:datatype="http://www.w3.org.../P330>

PDQ_OPEN_TRIAL_SEARCH_ID

<P329 rdf:datatype="http://www.w3.org.../P329>

PID_ID

<P367 rdf:datatype="http://www.w3.org.../P367>

PUBMEDID_PRIMARY_REFERENCE

<P171 rdf:datatype="http://www.w3.org.../P171>

SWISS_PROT

<P93 rdf:datatype="http://www.w3.org.../P93>

TOLERABLE_LEVEL

<P352 rdf:datatype="http://www.w3.org.../P352>

UNIT

<P355 rdf:datatype="http://www.w3.org.../P355>

USDA_ID

<P354 rdf:datatype="http://www.w3.org.../P354>

USE_FOR

<P333 rdf:datatype="http://www.w3.org.../P333>

US_RECOMMENDED_INTAKE

<P351 rdf:datatype="http://www.w3.org.../P351>

Definitions (MRDEF)

Only definitions with a source of NCI, NCI-GLOSS, or of an NCI subsource are included. Definitions are attached to their corresponding PT. For example, an NCI-GLOSS definition is attached to its NCI-GLOSS/PT. If there is no corresponding PT then the definition is attached to the NCI/PT. Definition attributions are enclosed within parentheses and appended to the definition.

Origin:

Definition: <P97...ncicp:complexDefinition xmlns:ncicp.../P97>

Alt_Definition: <P325...ncicp:complexDefinition xmlns:ncicp.../P325>

Relationships (MRREL)

Origin of the relationship is derived from the "owl:onPropertyrdf..." code (Roles) and/or the "<A# rdf..." code (Associations). For example: