Gubbins

Gubbins

Gubbins

Overview

Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) can be used to identify recombination using an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions.

Download and Installation

Please see our GitHub page for download and installation instructions.

Page, Andrew

Harris, Simon

External Contributors

Related Groups, Projects and Collaborations

The Pathogen Informatics team develop and maintain software applications and systems to support the research activities of the pathogen group. We develop and maintain scalable and robust automated tools for sequence and annotation tracking and analysis and provide ad-hoc informatics support and training to the researchers in the pathogen group.