I've been running a virtualized CDH 4.2 cluster. I now want to migrate allmy data to another (this time physical) set of slaves and then stop usingthe virtualized slaves.

I added the new physical slaves in the cluster, and marked all the oldvirtualized slaves as decommissioned using the dfs.hosts.exclude setting inhdfs-site.xml.

Almost all of the data replicated successfully to the new slaves, but whenI bring down the old slaves, some blocks start showing up as missing orcorrupt (according to the NN UI as well as fsck*). If I restart the oldslaves, then there are no missing blocks reported by fsck.

I've tried shutting down the old slaves two by two, and for some of them Isaw no problem, but then at some point I found two slaves which, when shutdown, resulted in a couple of blocks being under-replicated (1 out of 3replicas found). For example, fsck would report stuff like this:

/user/hive/warehouse/ads_destinations_hosts/part-m-00012: Under replicatedBP-1207449144-10.10.10.21-1356639087818:blk_6150201737015349469_121244.Target Replicas is 3 but found 1 replica(s).

The system then stayed in that state apparently forever. It never actuallyfixed the fact some blocks were under-replicated. Does that mean there'ssomething wrong with some of the old datanodes...? Why do they keep blockfor themselves (even thought they're decommissioned) instead of replicatingthose blocks to the new (non-decommissioned) datanodes?

How do I force replication of under-replicated blocks?

*Actually, the NN UI and fsck report slightly different things. The NN UIalways seems to report 60 under-replicated blocks, whereas fsck onlyreports those 60 under-replicated blocks when I shut down some of the olddatanodes... When the old nodes are up, fsck reports 0 under-replicatedblocks... This is very confusing!

Any help would be appreciated! Please don't hesitate to ask if I shouldprovide some of my logs, settings, or the output of some commands...!

After changing hdfs-site.xml, did you run "hadoop dfsadmin -refreshNodes"? That should have been enough, but you can try increasing the replication factor of these files, wait for them to be replicated to the new nodes, then setting it back to its original value.

Cheers,Marcos

In 28-03-2013 17:00, Felix GV wrote:Hello,

I've been running a virtualized CDH 4.2 cluster. I now want to migrate all my data to another (this time physical) set of slaves and then stop using the virtualized slaves.

I added the new physical slaves in the cluster, and marked all the old virtualized slaves as decommissioned using the dfs.hosts.exclude setting in hdfs-site.xml.

Almost all of the data replicated successfully to the new slaves, but when I bring down the old slaves, some blocks start showing up as missing or corrupt (according to the NN UI as well as fsck*). If I restart the old slaves, then there are no missing blocks reported by fsck.

I've tried shutting down the old slaves two by two, and for some of them I saw no problem, but then at some point I found two slaves which, when shut down, resulted in a couple of blocks being under-replicated (1 out of 3 replicas found). For example, fsck would report stuff like this:

/user/hive/warehouse/ads_destinations_hosts/part-m-00012: Under replicated BP-1207449144-10.10.10.21-1356639087818:blk_6150201737015349469_121244. Target Replicas is 3 but found 1 replica(s).

The system then stayed in that state apparently forever. It never actually fixed the fact some blocks were under-replicated. Does that mean there's something wrong with some of the old datanodes...? Why do they keep block for themselves (even thought they're decommissioned) instead of replicating those blocks to the new (non-decommissioned) datanodes?

How do I force replication of under-replicated blocks?

*Actually, the NN UI and fsck report slightly different things. The NN UI always seems to report 60 under-replicated blocks, whereas fsck only reports those 60 under-replicated blocks when I shut down some of the old datanodes... When the old nodes are up, fsck reports 0 under-replicated blocks... This is very confusing!

Any help would be appreciated! Please don't hesitate to ask if I should provide some of my logs, settings, or the output of some commands...!

Yes, I didn't specify how I was testing my changes, but basically, here'swhat I did:

My hdfs-site.xml file was modified to include a reference the a filecontaining a list of all datanodes (via dfs.hosts) and a reference to afile containing decommissioned nodes (via dfs.hosts.exclude). After that, Ijust changed these files, not hdfs-site.xml.

I first added all my old nodes in the dfs.hosts.exclude file, did hdfs dfsadmin-refreshNodes, and most of the data replicated correctly.

I then tried removing all old nodes from the dfs.hosts file, did hdfs dfsadmin-refreshNodes, and I saw that I now had a coupe of corrupt and missingblocks (60 of them).

I re-added all the old nodes in the dfs.hosts file, and removed themgradually, each time doing the refreshNodes or restarting the NN, and Inarrowed it down to three datanodes in particular, which seem to be thethree nodes where all of those 60 blocks are located.

Is it possible, perhaps, that these three nodes are completely incapable ofreplicating what they have (because they're corrupt or something), and soevery block was replicated from other nodes, but the blocks that happenedto be located on these three nodes are... doomed? I can see the data inthose blocks in the NN hdfs browser, so I guess it's not corrupted... Ialso tried pinging the new nodes from those old ones and it works too, so Iguess there is no network partition...

I'm in the process of increasing replication factor above 3, but I don'tknow if that's gonna do anything...

> Felix,>> After changing hdfs-site.xml, did you run "hadoop dfsadmin -refreshNodes"?> That should have been enough, but you can try increasing the replication> factor of these files, wait for them to be replicated to the new nodes,> then setting it back to its original value.>> Cheers,> Marcos>>> In 28-03-2013 17:00, Felix GV wrote:>> Hello,>> I've been running a virtualized CDH 4.2 cluster. I now want to migrate> all my data to another (this time physical) set of slaves and then stop> using the virtualized slaves.>> I added the new physical slaves in the cluster, and marked all the old> virtualized slaves as decommissioned using the dfs.hosts.exclude setting in> hdfs-site.xml.>> Almost all of the data replicated successfully to the new slaves, but> when I bring down the old slaves, some blocks start showing up as missing> or corrupt (according to the NN UI as well as fsck*). If I restart the old> slaves, then there are no missing blocks reported by fsck.>> I've tried shutting down the old slaves two by two, and for some of them> I saw no problem, but then at some point I found two slaves which, when> shut down, resulted in a couple of blocks being under-replicated (1 out of> 3 replicas found). For example, fsck would report stuff like this:>> /user/hive/warehouse/ads_destinations_hosts/part-m-00012: Under> replicated> BP-1207449144-10.10.10.21-1356639087818:blk_6150201737015349469_121244.> Target Replicas is 3 but found 1 replica(s).>> The system then stayed in that state apparently forever. It never> actually fixed the fact some blocks were under-replicated. Does that mean> there's something wrong with some of the old datanodes...? Why do they keep> block for themselves (even thought they're decommissioned) instead of> replicating those blocks to the new (non-decommissioned) datanodes?>> How do I force replication of under-replicated blocks?>> *Actually, the NN UI and fsck report slightly different things. The NN> UI always seems to report 60 under-replicated blocks, whereas fsck only> reports those 60 under-replicated blocks when I shut down some of the old> datanodes... When the old nodes are up, fsck reports 0 under-replicated> blocks... This is very confusing!>> Any help would be appreciated! Please don't hesitate to ask if I should> provide some of my logs, settings, or the output of some commands...!

> I'm using the version of hadoop in CDH 4.2, which is a version of Hadoop 2.0 with a bunch of patches on top...> > I've tried copying one block and its .meta file to one of my new DN, then restarted the DN service, and it did pick up the missing block and replicate it properly within the new slaves. So... that's great, but it's also super annoying, I don't want to have to pick and choose each block manually. Although I guess I could parse the output of fsck, figure out where the blocks are and script the whole thing.

You can put in a for loop and copy them another node. None but little scripting.

------------> > I'm now trying to rsync all of the data from an old node to a new one, and see if it's gonna be able to pick that up, but I'm afraid the subdir structure might not port over nicely to the new node. Also, this is acceptable today to save me from picking each block manually (or come up with the script) because I don't have that much data on the old node, but if I had gotten in that situation with a large amount of data, that would not have been a very good solution...> > I'll report back when I'll have made some more progres...> > --> Felix> > > On Thu, Mar 28, 2013 at 7:01 PM, Azuryy Yu <[EMAIL PROTECTED]> wrote:> which hadoop version you used?> > On Mar 29, 2013 5:24 AM, "Felix GV" <[EMAIL PROTECTED]> wrote:> >> > Yes, I didn't specify how I was testing my changes, but basically, here's what I did:> >> > My hdfs-site.xml file was modified to include a reference the a file containing a list of all datanodes (via dfs.hosts) and a reference to a file containing decommissioned nodes (via dfs.hosts.exclude). After that, I just changed these files, not hdfs-site.xml.> >> > I first added all my old nodes in the dfs.hosts.exclude file, did hdfs dfsadmin -refreshNodes, and most of the data replicated correctly.> >> > I then tried removing all old nodes from the dfs.hosts file, did hdfs dfsadmin -refreshNodes, and I saw that I now had a coupe of corrupt and missing blocks (60 of them).> >> > I re-added all the old nodes in the dfs.hosts file, and removed them gradually, each time doing the refreshNodes or restarting the NN, and I narrowed it down to three datanodes in particular, which seem to be the three nodes where all of those 60 blocks are located.> >> > Is it possible, perhaps, that these three nodes are completely incapable of replicating what they have (because they're corrupt or something), and so every block was replicated from other nodes, but the blocks that happened to be located on these three nodes are... doomed? I can see the data in those blocks in the NN hdfs browser, so I guess it's not corrupted... I also tried pinging the new nodes from those old ones and it works too, so I guess there is no network partition...> >> > I'm in the process of increasing replication factor above 3, but I don't know if that's gonna do anything...> >> > --> > Felix> >> >> > On Thu, Mar 28, 2013 at 4:45 PM, MARCOS MEDRADO RUBINELLI <[EMAIL PROTECTED]> wrote:> >>> >> Felix,> >>> >> After changing hdfs-site.xml, did you run "hadoop dfsadmin -refreshNodes"? That should have been enough, but you can try increasing the replication factor of these files, wait for them to be replicated to the new nodes, then setting it back to its original value.> >>> >> Cheers,> >> Marcos> >>> >>> >> In 28-03-2013 17:00, Felix GV wrote:> >>>> >>> Hello,> >>>> >>> I've been running a virtualized CDH 4.2 cluster. I now want to migrate all my data to another (this time physical) set of slaves and then stop using the virtualized slaves.> >>>> >>> I added the new physical slaves in the cluster, and marked all the old virtualized slaves as decommissioned using the dfs.hosts.exclude setting in hdfs-site.xml.

>> On Mar 28, 2013, at 7:13 PM, Felix GV <[EMAIL PROTECTED]> wrote:>> I'm using the version of hadoop in CDH 4.2, which is a version of Hadoop> 2.0 with a bunch of patches on top...>> I've tried copying one block and its .meta file to one of my new DN, then> restarted the DN service, and it did pick up the missing block and> replicate it properly within the new slaves. So... that's great, but it's> also super annoying, I don't want to have to pick and choose each block> manually. Although I guess I could parse the output of fsck, figure out> where the blocks are and script the whole thing.>>> This should flush out all the corrupt or missing blocks :>> hadoop fsck <path to HDFS dir> -files -blocks -locations | egrep> "CORRUPT|MISSING">> You can put in a for loop and copy them another node. None but little> scripting.>> ------------>>>> I'm now trying to rsync all of the data from an old node to a new one, and> see if it's gonna be able to pick that up, but I'm afraid the subdir> structure might not port over nicely to the new node. Also, this is> acceptable today to save me from picking each block manually (or come up> with the script) because I don't have that much data on the old node, but> if I had gotten in that situation with a large amount of data, that would> not have been a very good solution...>> I'll report back when I'll have made some more progres...>> --> Felix>>> On Thu, Mar 28, 2013 at 7:01 PM, Azuryy Yu <[EMAIL PROTECTED]> wrote:>>> which hadoop version you used?>>>> On Mar 29, 2013 5:24 AM, "Felix GV" <[EMAIL PROTECTED]> wrote:>> >>> > Yes, I didn't specify how I was testing my changes, but basically,>> here's what I did:>> >>> > My hdfs-site.xml file was modified to include a reference the a file>> containing a list of all datanodes (via dfs.hosts) and a reference to a>> file containing decommissioned nodes (via dfs.hosts.exclude). After that, I>> just changed these files, not hdfs-site.xml.>> >>> > I first added all my old nodes in the dfs.hosts.exclude file, did>> hdfs dfsadmin -refreshNodes, and most of the data replicated correctly.>> >>> > I then tried removing all old nodes from the dfs.hosts file, did>> hdfs dfsadmin -refreshNodes, and I saw that I now had a coupe of corrupt>> and missing blocks (60 of them).>> >>> > I re-added all the old nodes in the dfs.hosts file, and removed them>> gradually, each time doing the refreshNodes or restarting the NN, and I>> narrowed it down to three datanodes in particular, which seem to be the>> three nodes where all of those 60 blocks are located.>> >>> > Is it possible, perhaps, that these three nodes are completely>> incapable of replicating what they have (because they're corrupt or>> something), and so every block was replicated from other nodes, but the>> blocks that happened to be located on these three nodes are... doomed? I>> can see the data in those blocks in the NN hdfs browser, so I guess it's>> not corrupted... I also tried pinging the new nodes from those old ones and>> it works too, so I guess there is no network partition...>> >>> > I'm in the process of increasing replication factor above 3, but I>> don't know if that's gonna do anything...>> >>> > -->> > Felix>> >>> >>> > On Thu, Mar 28, 2013 at 4:45 PM, MARCOS MEDRADO RUBINELLI <>> [EMAIL PROTECTED]> wrote:>> >>>> >> Felix,>> >>>> >> After changing hdfs-site.xml, did you run "hadoop dfsadmin>> -refreshNodes"? That should have been enough, but you can try increasing

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