Re: [Apbs-users] APBS compiled for OpenMPI?

Hi Robert,
I'm very interested in your work to make a openMPI version of apbs.
Our HPC system is very unstable in MPICH2 when there are lots of job
running. I have also tried with lam, they also died.
In running AMBER, we found the openMPI is more reliable on this
system. I hope you openMPI version can save me.
Our openMPI is 1.2.2 with CentOS x86_64. If you can send me your
configure.ac file I believe I can make a way to let it work.
Thanks for your help.
On Dec 19, 2007 1:46 PM, Robert Konecny <rok@...> wrote:
>
> Hi Mike,
>
> the short answer is yes - I have it running with OpenMPI 1.2.3 on my CentOS
> 4.6 x86_64 box.
>
> However, it took me some configure.ac tweaking to get it running - the
> default configure script is not OpenMPI-enabled. Let me know if you are
> interested in details.
>
> Cheers,
>
> robert
>
>
> On Wed, Dec 19, 2007 at 10:46:49AM -0600, Mike Hanby wrote:
> >
> > Howdy,
> >
> >
> > Is it possible to compile APBS 0.5.1 for OpenMPI 1.2.4?
> >
> >
> > If so, what mpi related switches should I provide to the ./configure
> > command?
> >
> >
> > Thanks
>
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>
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--
Sanbo Qin
Institute of Molecular Biophysics,
Florida State University,

Hi Mike,
the short answer is yes - I have it running with OpenMPI 1.2.3 on my CentOS
4.6 x86_64 box.
However, it took me some configure.ac tweaking to get it running - the
default configure script is not OpenMPI-enabled. Let me know if you are
interested in details.
Cheers,
robert
On Wed, Dec 19, 2007 at 10:46:49AM -0600, Mike Hanby wrote:
>
> Howdy,
>
>
> Is it possible to compile APBS 0.5.1 for OpenMPI 1.2.4?
>
>
> If so, what mpi related switches should I provide to the ./configure
> command?
>
>
> Thanks
> -------------------------------------------------------------------------
> SF.Net email is sponsored by:
> Check out the new SourceForge.net Marketplace.
> It's the best place to buy or sell services
> for just about anything Open Source.
> http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace
> _______________________________________________
> apbs-users mailing list
> apbs-users@...
> https://lists.sourceforge.net/lists/listinfo/apbs-users

Hi Robert,
I'm very interested in your work to make a openMPI version of apbs.
Our HPC system is very unstable in MPICH2 when there are lots of job
running. I have also tried with lam, they also died.
In running AMBER, we found the openMPI is more reliable on this
system. I hope you openMPI version can save me.
Our openMPI is 1.2.2 with CentOS x86_64. If you can send me your
configure.ac file I believe I can make a way to let it work.
Thanks for your help.
On Dec 19, 2007 1:46 PM, Robert Konecny <rok@...> wrote:
>
> Hi Mike,
>
> the short answer is yes - I have it running with OpenMPI 1.2.3 on my CentOS
> 4.6 x86_64 box.
>
> However, it took me some configure.ac tweaking to get it running - the
> default configure script is not OpenMPI-enabled. Let me know if you are
> interested in details.
>
> Cheers,
>
> robert
>
>
> On Wed, Dec 19, 2007 at 10:46:49AM -0600, Mike Hanby wrote:
> >
> > Howdy,
> >
> >
> > Is it possible to compile APBS 0.5.1 for OpenMPI 1.2.4?
> >
> >
> > If so, what mpi related switches should I provide to the ./configure
> > command?
> >
> >
> > Thanks
>
> > -------------------------------------------------------------------------
> > SF.Net email is sponsored by:
> > Check out the new SourceForge.net Marketplace.
> > It's the best place to buy or sell services
> > for just about anything Open Source.
> > http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace
> > _______________________________________________
> > apbs-users mailing list
> > apbs-users@...
> > https://lists.sourceforge.net/lists/listinfo/apbs-users
>
>
> -------------------------------------------------------------------------
> SF.Net email is sponsored by:
> Check out the new SourceForge.net Marketplace.
> It's the best place to buy or sell services
> for just about anything Open Source.
> http://ad.doubleclick.net/clk;164216239;13503038;w?http://sf.net/marketplace
> _______________________________________________
> apbs-users mailing list
> apbs-users@...
> https://lists.sourceforge.net/lists/listinfo/apbs-users
>
--
Sanbo Qin
Institute of Molecular Biophysics,
Florida State University,