First thing you need to do is replace the fuse then dissconnect the positive wire from your fan. now warm upp the bike till the fan should turn on .
now if the fuse blows we need to find the short if it doesnt blow you need a new fan.
good luck
paul

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Related Questions:

Unplug the radiator fan, replace the fuse and see if it blows again. If not, then its likely the radiator fan is shorted. Use an ohm meter and see what the resistance is. It should be greater than 5 ohms.

Some vehicle's cooling radiator fan does not turn on untill needed. If your Temperature Gauge is working as far as you know, Try running your car for over 10 miles; the fan should start working. If not, check your fuses. You can also try to directly connect the radiator colling fan motor to the battery and see if the fan works. If not, the fan motor may not be working.

If the radiator fan runs with the engine is cold and the ac - defrost is off, you would need to check the fan relay and see if it is getting a ground signal from the computer.The computer grounds the relay when the fan is needed. The fan will run anytime the ac compressor is engaged.

the one thing that comes too mind is trapped air-when i do a radiator I always start up and warm engine so thermostat cycles a few times to make sure that you dont trap air in colling system. you did not say so but if you didnt, its really not a bad idea to change thermostat and gasket when digging into colling system. they are usaully fairly cheap.

Blown fuse means there is an increase of current due to an increase of load or a short. You may want to check the wiring harness that has the wires of those not running that you have mentioned for open circuit, corroded insulation, loose cable, ect that needs replacement and mending.

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If its a 4.0 it should be on or near the thermostat housing. not sure on the other engine...should be pretty much in the same vicinity. You also have a relay in the power distribution box near the battery.