Fusion

STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:query proteins and first shell of interactors

white nodes:second shell of interactors

Node Content

empty nodes:proteins of unknown 3D structure

filled nodes:some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pco111548

Protein mago nashi (161 aa)

Predicted Functional Partners:

pco106378a

LOC100283928 (199 aa)

0.997

Zm.15791

RNA-binding protein 8A (198 aa)

0.997

GRMZM2G072671_P01

RNA-binding protein 8A (196 aa)

0.997

Zm.16316

ATP binding protein (374 aa)

0.978

GRMZM2G167347_P01

Uncharacterized protein (504 aa)

0.978

Zm.162933

Translation initiation factor (414 aa)

0.978

Zm.78900

ATP-dependent RNA helicase DBP5-like (892 aa)

0.978

tif-4A3

Eukaryotic initiation factor 4A (eIF-4A)(EC 3.6.4.13)(ATP-dependent RNA helicase eIF4A); ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5’-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon (By similarity) (414 aa)

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1

node2

node1 accession

node2 accession

node1 annotation

node2 annotation

score

AC198169.4_FGP004

GRMZM2G072671_P01

AC198169.4_FGP004

GRMZM2G072671_P01

Uncharacterized LOC100191447

RNA-binding protein 8A

0.958

AC198169.4_FGP004

GRMZM2G167347_P01

AC198169.4_FGP004

GRMZM2G167347_P01

Uncharacterized LOC100191447

Uncharacterized protein

0.526

AC198169.4_FGP004

Zm.15791

AC198169.4_FGP004

GRMZM5G803275_P01

Uncharacterized LOC100191447

RNA-binding protein 8A

0.958

AC198169.4_FGP004

pco106378a

AC198169.4_FGP004

GRMZM5G817255_P03

Uncharacterized LOC100191447

LOC100283928

0.958

AC198169.4_FGP004

pco111548

AC198169.4_FGP004

GRMZM5G878754_P01

Uncharacterized LOC100191447

Protein mago nashi

0.978

GRMZM2G072671_P01

AC198169.4_FGP004

GRMZM2G072671_P01

AC198169.4_FGP004

RNA-binding protein 8A

Uncharacterized LOC100191447

0.958

GRMZM2G072671_P01

GRMZM2G167347_P01

GRMZM2G072671_P01

GRMZM2G167347_P01

RNA-binding protein 8A

Uncharacterized protein

0.958

GRMZM2G072671_P01

GRMZM2G180558_P01

GRMZM2G072671_P01

GRMZM2G180558_P01

RNA-binding protein 8A

Hypothetical protein LOC100273358

0.992

GRMZM2G072671_P01

Zm.15791

GRMZM2G072671_P01

GRMZM5G803275_P01

RNA-binding protein 8A

RNA-binding protein 8A

0.880

GRMZM2G072671_P01

Zm.162933

GRMZM2G072671_P01

GRMZM2G116034_P02

RNA-binding protein 8A

Translation initiation factor

0.958

GRMZM2G072671_P01

Zm.16316

GRMZM2G072671_P01

GRMZM2G415538_P01

RNA-binding protein 8A

ATP binding protein

0.958

GRMZM2G072671_P01

Zm.78900

GRMZM2G072671_P01

GRMZM2G028366_P01

RNA-binding protein 8A

ATP-dependent RNA helicase DBP5-like

0.958

GRMZM2G072671_P01

pco106378a

GRMZM2G072671_P01

GRMZM5G817255_P03

RNA-binding protein 8A

LOC100283928

0.879

GRMZM2G072671_P01

pco111548

GRMZM2G072671_P01

GRMZM5G878754_P01

RNA-binding protein 8A

Protein mago nashi

0.997

GRMZM2G072671_P01

tif-4A3

GRMZM2G072671_P01

GRMZM2G027995_P01

RNA-binding protein 8A

Eukaryotic initiation factor 4A (eIF-4A)(EC 3.6.4.13)(ATP-dependent RNA helicase eIF4A); ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5’-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon (By similarity)

0.958

GRMZM2G167347_P01

AC198169.4_FGP004

GRMZM2G167347_P01

AC198169.4_FGP004

Uncharacterized protein

Uncharacterized LOC100191447

0.526

GRMZM2G167347_P01

GRMZM2G072671_P01

GRMZM2G167347_P01

GRMZM2G072671_P01

Uncharacterized protein

RNA-binding protein 8A

0.958

GRMZM2G167347_P01

Zm.15791

GRMZM2G167347_P01

GRMZM5G803275_P01

Uncharacterized protein

RNA-binding protein 8A

0.958

GRMZM2G167347_P01

Zm.16316

GRMZM2G167347_P01

GRMZM2G415538_P01

Uncharacterized protein

ATP binding protein

0.526

GRMZM2G167347_P01

pco106378a

GRMZM2G167347_P01

GRMZM5G817255_P03

Uncharacterized protein

LOC100283928

0.958

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Network Stats

Network Stats analysis is still ongoing, please wait ...

Functional enrichments in your networkNote: some enrichments may be expected here (why?)

Enrichment analysis is still ongoing, please wait ...

Statistical background

For the above enrichment analysis, the following statistical background is assumed: