Hello Oskar,
"N" in the file "All SNPs in Personal Genomes" implies lack of
information. The file has SNP data from the Southern African genomes
as well as a lot of other published personal genomes. For the other
personal genomes, we did not have the consensus calls at all locations
(we just have the SNP locations and calls) and hence that lack of
information is depicted by the base "N". For the Southern African
genomes, the lack of information could be because of the method used
e.g. genotyping does not give the consensus call on every location, or
because we had no coverage on that location.
In the future, please send Galaxy questions / correspondence to one of
the Galaxy mail lists ( galaxy-dev@bx.psu.edu, galaxy-user@bx.psu.edu,
galaxy-bugs@bx.psu.edu ) instead of my personal email address.
Thanks!
Greg Von Kuster
Galaxy Development Team
greg@bx.psu.edu