Via Aaron Fitt, Texas left-hander Sam Stafford will miss the 2012 season due to shoulder surgery. The Yankees selected Stafford with their second round pick last year, but they did not sign him after a physical revealed a small tear in his shoulder. They’ll receive the 89th overall pick in this year’s draft as compensation. The injury is really unfortunate for Stafford, who was poised to climb up the draft rankings this year as a hard-throwing lefty in a class generally considered short on college pitching.

Barring a late report (which is absolutely still possible), the Yankees did not sign second round pick Sam Stafford before Monday’s midnight deadline. KirkBohls reports that the deal hit a snag when the team found something they didn’t like in the left-hander’s arm and only offered him $200k, about half of MLB’s slot recommendation of $398.7k. Of course, Bohls did report that the two sides agreed to a deal worth $400k last month, so who knows. I’m guessing they agreed to the money, then the red flag popped up in the pre-signing physical.

Stafford, a southpaw from Texas, was the 88th overall pick. The Yankees will get the 89th pick in next year’s draft as compensation for the non-deal, and they’ll keep that pick no matter what. They can’t lose it for signing free agents, nothing. They won’t get another pick in 2012 if they fail to sign the player they take with that pick, however.

Via Kirk Bohls, the Yankees have signed second round pick Sam Stafford for $400,000, which is just a touch over-slot. Stafford, a left-hander from Texas, has run his fastball up as high as 96 while showing a power curveball this spring and last summer. He struck out 91 but walked 42 in 81.1 IP with the Longhorns this year. Stafford’s raw stuff is undeniable but he struggles to harness it, so he’s going to have to work on his changeup and overall command to stick as a starter. Here’s some video.