apmsWAPP: Pre- and Postprocessing for AP-MS data analysis based on spectral counts

Version 1.0

apmsWAPP provides a complete workflow for the analysis of AP-MS data (replicate single-bait purifications including negative controls) based on spectral counts.
It comprises pre-processing, scoring and postprocessing of protein interactions.
A final list of interaction candidates is reported: it provides a ranking of the candidates according
to their p-values which allow estimating the number of false-positive interactions.