Oryza sativa Japonica Group vs Trifolium pratense LastZ Results

Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Trifolium pratense (Trifolium pratense, Trpr) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release . Oryza sativa Japonica Group was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 140,564

Genome coverage (bp)

Coding exon coverage (bp)

Oryza sativa Japonica Group

Uncovered: 343,357,036 out of 375,049,285Covered: 31,692,249 out of 375,049,285

Uncovered: 16,193,909 out of 34,403,043Matches: 11,422,129 out of 34,403,043Mismatches: 6,407,801 out of 34,403,043Insertions: 379,204 out of 34,403,043

Trifolium pratense

Uncovered: 272,193,050 out of 304,842,038Covered: 32,648,988 out of 304,842,038

Uncovered: 20,205,561 out of 41,242,947Matches: 13,496,534 out of 41,242,947Mismatches: 7,121,210 out of 41,242,947Insertions: 419,642 out of 41,242,947