It is very important for reservoir management to estimate the sedimentation amount deposited in a reservoir. Firstly, the formula for estimating the bed load transport rate in the bed of sand waves of prototype by model experiment was derived based on the similarity of grain Froude number; Secondly, several model experiments that the bed forms is similar with the prototype were carried, and the formula was verified. As a result, when the ratio of grain diameter in the prototype and model is great enough, and the bed forms in the model is similar with that in the prototype, a satisfactory result can be obtained by using the estimation formula for estimating the bed load transport rate of the prototype that sand waves occur in the bed.