Population Biology (PopBio)

PopBio is part of our ongoing efforts to integrate genomic, phenotypic and population data for traits such as insecticide resistance genotypes (>5.000 assays) and phenotypes (>11.000 assays), genetic variation with microsatellites, chromosomal inversions and SNPs, population abundance (>22.6 million mosquitoes), pathogen infection status (>44.000 assays) and blood meal identification (>49.000 assays). How to query, browse and visualize the data? There are three options:

With a map that includes data tables and plots. The tutorial below has insecticide resistance (IR) as use case. In addition to IR other four map 'views' are available, sample queries for all are available bellow. More views are under development. The map displays circular markers, each one is a data point with rich metadata including publication citation, dates and etc.

With the site Search, tutorial below. Follow this link for a basic/introductory Search tutorial and follow this link for a tutorial of Advanced Search with PopBio as a use case

Abundance

Temporal abundance that can be filtered by species, sample type, collection protocol, project and assay protocol. We have large multiyear datasets from regular US mosquito control district surveillance. Records for >22.6 million mosquitoes collected from ~3500 locations during >100K collection events (100K occurrence records). We also have records from other countries.

This project has been funded in whole or in part with Federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract No. HHSN272201400029C.