This is the download page for a collection of protein sequence
alignment benchmarks including BALIBASE v3, PREFAB v4, OXBENCH, and
SABRE. These have been converted to a standard FASTA format that is
convenient for further analysis. Accuracy scores for some selected
methods are included to allow third party verification of my results.

Citation

A paper is in submission. For now you can cite this URL: Edgar, R.C., /bench.