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Dipy is a free and open source software project focusing mainly on diffusionmagnetic resonance imaging (dMRI) analysis.
Nonetheless, as we solve problems in dMRI some of the solutions are applicable to the greater medical imaging and image processing communities.
See for example our registration and denoising tutorials.

Here is a simple example showing how to calculate color FA. We
use a single Tensor model to reconstruct the datasets which are saved in a
Nifti file along with the b-values and b-vectors which are saved as text files.
In this example we use only a few voxels with 101 gradient directions: