Job details:

The abundance of Clostridium_phytofermentans across gut microbiome samples:

For taxonomic groups (e.g. species), abundance is defined as the proportion of cells that are from a taxonomic group
For functional groups (e.g. gene families), abundance is defined as the average copy-number of the function per cell

Left:
the abundance of Clostridium_phytofermentans was estimated across human gut metagenomes
Samples with an abundance of zero were assigned the smallest non-zero value

Right:
the average abundance of Clostridium_phytofermentans was compared to the average abundance
of other groups at the same functional or taxonomic level

The prevalence of Clostridium_phytofermentans across gut microbiome samples:

Prevalence
is defined at the percent of samples where Clostridium_phytofermentans is found

Left:
the prevalence of Clostridium_phytofermentans was estimated across human gut metagenomes at different abundance thresholds

Right:
the prevalence of Clostridium_phytofermentans at a minimum abundance of 0.001 was compared to the prevalence
of other groups at the same functional or taxonomic level.

Wilcoxon rank-sum tests
were performed to determine if the abundance of Clostridium_phytofermentans was different between cases and controls for several diseases (see table)

For each disease, case and control individuals were selected from the same country and individuals with co-morbities were excluded
See the documentation for more information on these cohorts

p_value indicates whether there is a significant difference in the abundance of Clostridium_phytofermentans between cases and controlsrank and percentile indicate how the p_value for Clostridium_phytofermentans compares to other functional or taxonomic groups
For example, a percentile of 5.0 indicates your p_value was more significant than 95% of other functions or taxa