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Don't export them in PDF format. Export them in CSV and make your own "shell" around it.

That way you can personalize the reports. You might want to emphasize more on certain aspects of the reports and you can do all that if you export it to csv. If you import it in Excel, make sure you don't double click on the .csv file, but "import" the file as a comma seperated file. That way you can actually do something with the data.

It takes a bit more time, but you only need to build the master file once and than you can just reuse it everytime you download another csv file.

Depending on the type of data that is in the reports much of it from SEO Moz and Google Analytics is available in CSV format so can be put into a spreadsheet with your logo/branding at the top. This obviously won't be as automatic a process.

From this point on you can brand it yourself in your own PDF format and report :-)

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