Posts Tagged ‘Gephi’

As mentioned in a previous post, there are many statistics that can be derived from the network visualizations that I have been generating from the course data I have been collecting. At the moment, these are the particular numbers that I have been paying attention to:

Mean Degree of Nodes – The mean amount of connections per node on the graph.

Mean Weighted Degree of Nodes - The mean weight of connections per node on the graph.

Graph Density – A ratio of the number of edges per node to the number of possible edges.

Modularity – a measure of the strength of division of a network into modules. Networks with high modularity have dense connections between the nodes within modules but sparse connections between nodes in different modules.

Mean Clustering Coefficient - the degree to which nodes in the graph tend to cluster together.

So, in terms of applying these to the networks generated with awards data:

Mean Degree of Nodes – The mean amount of connections for each award. i.e. the mean amount of awards that each award is connected to.

Mean Weighted Degree of Nodes - The mean weight of connections for each award. i.e. the mean amount of modules shared by that award with other awards.

Graph Density – The amount of connections per award when compared to the total amount of awards in the network. (more affected by an increase in awards offered than others)

Modularity - a higher modularity suggests that awards are very highly connected with specific other awards, but have very few ‘odd’ connections to other awards in the network. A very high modularity would suggest that a group of awards shared a lot of modules between themselves.

Mean Clustering Coefficient - a low coefficient would suggest that awards did not group together, and therefore did not share modules between them. A high coefficient would suggest that most of the awards in the network formed clusters with other awards.

The numbers generated for the weighted connections between awards for the academic year 2006/07 through to 2012/13 are as follows:

Academic Year

Mean Degree

Mean Weighted Degree

Graph Density

Modularity

Mean Clustering Coefficient

2006 – 2007

0.804

1.821

0.069

0.657

0.357

2007 – 2008

0.763

1.711

0.041

0.726

0.408

2008 – 2009

0.500

1.324

0.030

0.588

0.224

2009 – 2010

0.405

1.432

0.023

0.574

0.124

2010 – 2011

0.720

1.880

0.029

0.777

0.212

2011 – 2012

0.716

2.486

0.020

0.810

0.259

2012 – 2013

0.651

4.349

0.021

0.847

0.267

So what do these numbers show and are they actually useful? Well….

Mean degree shows the amount of awards that each award is connected to, on average. If we look at mean weighted degree instead, we then take into consideration the weight of a connection between a pair of nodes, i.e. the amount of joins between them, rather than just the fact that a join exists. Plotting this graphically helps to show the pattern that emerges.

Mean weighted degree of awards, 2006/07 - 2012/13

From the graph above it becomes clear that there is a definite drop on MWD (mean weighted degree) from the academic year 07/08 to the year 08/09 (around 22%), showing that the average amount of links between awards dropped fairly considerably. Through looking back at the university’s history, this can be explained as this was the point in time that the amount of points per module of study was altered, meaning that, essentially, multiple version of the same award were running in tandem: some with the old weighting of awards, some the new. This also explains the steady increase in MWD up to 11-12 which is the first year that the old weighted degrees would not have been active at all. From the highest point of the old weighting, to this point in the new weighting, there is an increase of over 36% in the amount of joins between awards offered at the university. This shows that (assuming an increased modularity is good in terms of curriculum design) that the provision has been improved through the alteration of module weightings. Taking into account the overall increase in the amount of awards offered, this also shows that the restructuring of the modules had a significant impact on the sharing of teaching and assessment across different awards.

The number given for the ‘modularity’ of the graphs shows a couple of interesting things.

Modularity values for awards, 06-07 to 12-13

As noted above, the modularity shows how well the nodes on the graph (i.e. the awards) form into self contained clusters. A value of 1 would suggest that the awards form perfectly into self-contained clusters, having lots of connections between themselves but no connections with other clusters, a value of 0 would suggest the opposite. As you can see from the graph above, in 06/07, the modularity was reasonably high, quite possibly due to the smaller amount of awards offered at the university. This figure rises over the next year, and then drops for two consecutive years as the weighting of modules at the university goes through a period of change. As the change is fully implemented, the modularity rises significantly and continues to rise, almost at a constant rate from 2010-11 through to 2012-13. This would suggest (though is not necessarily the case) that, either by design or good fortune, the awards offered at the university are starting to form into self-contained groups or areas of specialism. This is interesting to note, as the university has recently gone through an organizational restructuring whereby three colleges were formed – could these clusters be contained within the colleges?

Though this has only looked at two series of numbers generated for each of these visualizations, it does show that visualizing course data produces extra data that cannot be collected when the data is in its raw form. Further to this, it also shows that this data accurately reflects historical changes in provision within the university. If these principles can be applied retrospectively to show changes, in which ways can they be applied to decision making processes, to help assess the impact of potential changes?

After having worked on creating a badge system for universities over the past few weeks, I’ve now gone back to looking at how the massive amount of course data that I currently have can be visualized in a meaningful and useful way.

My first bout of visualization resulted in a series of A0 posters showing the links between all of the modules currently being delivered at the university. Whilst these visualizations are very useful for showing the complexity of course structure and relationships, it becomes fairly difficult to extract any information that is particularly useful. For example, the edges in the network denote a connection between two modules in terms of the award that the combination is delivered on. A collection of edges of the same colour show a group of connections for the same award, i.e. a group of modules delivered as part of one particular award.

As the next step in my on-going quest to make sense of all of this course data (and related datasets), I’ve decided to look at a different abstraction of the same datasets, this time looking at the connections on an award level. This is one level of abstraction higher on the scale of University -> College -> Faculty -> School -> Award -> Module. By changing to this level of abstraction, it means that a) there are far fewer nodes on the graph, making it easier to see the information and b) it is easier for people to relate to an award (i.e. more easily recognizable what the node is referring to) than it is at a module level. At the moment, the visualizations are considering data for awards that are ‘Active’ i.e. have students on all levels and have a full-time, ‘traditional’ degree ‘feel’. I chose to do this as taking into account awards that are on their way in or way out, and part-time variations on a theme offered in a full-time course started to distort the data, flooding the networks with nodes and edges that are essentially replicas of other nodes and edges in the graph. Obviously the visualization exercise could be repeated for part-time or post-graduate courses, or to include them.

Narrowing the data down as described above, and running it through the trusted Gephi, this time using a circular layout algorithm, produces visualizations such as the following:

Links between awards for 2006-07

Links between awards for 2009 - 10

Links between awards for 2012 - 13

Each node around the edge of the graph represents an award that was active at the university for that particular year. With the university being relatively young in the grand scheme of things, the time-span between the first visualization (06-07) and the final (12-13) represent a substantial proportion of the university’s (in its current form) history. Award codes have been used as they are fairly short and remain similar in groups of awards offered by the same departments or schools. By doing so, the relative position of awards is more or less maintained in each visualization. For example. the pattern created between Computer Science awards and Media awards exists and can be easily spotted in each of the visualizations, even though the amount of awards in each visualization changes and the exact award codes of each award code may change. The full collection of visualizations can be accessed here: 2006 – 2007, 2007-2008, 2008-2009, 2009-2010, 2010-2011, 2011-2012, 2012-2013. These visualizations show three different sets of information: the amount of active awards for each year, the codes for the active awards and the relationships (where they exist) between the awards, i.e. where they share modules in common.

By taking into account the amount of modules shared between the awards and including this in the visualizations, we get a different view of the data. We can not only see where links exist, but also the strength of the links between the awards. Including the amount of modules shared between awards as the weight of each of the edges produces the following visualizations:

By introducing the weighted edges into the network, we can learn new pieces of information through the visualizations. Whilst the Computer Science – Media pattern exists across several years, we can see it move from being one of the more dominant links (2007-08 / 09-10) to being overshadowed by the amount of modules being shared by, for instance, Film and Television and Media Production and History & Social Science awards.

As well as making pretty pictures with the course data, the statistics associated with these networks can also be analyzed, but that will be the focus for my next blog post.

After asking colleagues in Planning, I came across some stored reports that contain information about the various awards/courses offered at the university, along with the modules that constitute those awards – from short certificates to full undergraduate and postgraduate degrees. Whilst the reports date back to the 90s, the data within them is substantial enough to be used from 2006-07 onwards; in total this comes to around 50,000 individual award->module relationships spread over the 6 academic years represented in the data.

The first question that arose was: ‘What to do with six years of course data?!?!?!’.

After speaking with Tony Hirst last week, we came to the conclusion that this data would also have a great benefit if utilised in new ways within the university itself, as well as presenting the course information (and related datasets) to current and prospective students. The first way I decided to look at all of this information was to visualise the relationships between modules and courses offered at the university.

The data shows how different awards share certain modules in common; this can be seen in small-scale examples within the raw data itself, but how would the entire dataset for a year look? To find out, I extracted the pertinent information from everything that was currently being stored, and eventually narrowed it down to a set of data that showed the relationships between modules – basically pairs of modules offered on the same awards. Modules formed the nodes of the graph and the links between the nodes – the edges, are representative of the various courses that the modules are offered on.

With this dataset prepared, I loaded the data into Gephi, selected an appropriate layout algorithm and let Gephi work its magic. As a result, we get graphs like this: allmodules_11_12. (Each node is a module, each edge is an award that the module is available on, edge colours represent a single award). From these graphs we can see that clusters of courses form that share many modules in common, mainly around joint degrees (which makes sense!); we can also see that many courses ‘float away’ from these hubs as they are entirely self contained and share no modules with any other award offered at the university. The other graphs can be seen here: all modules 06 07, all modules 07 08, all modules 08 09, all modules 09 10 and all modules 10 11.

So apart from making pretty pictures with course data, what purpose has this served? Well, firstly, I now know that I can get a vast amount of data covering the past six years of course and modules offered at the university. Secondly, I now have a better understanding of the inner workings of Gephi, which will no doubt serve me well over the rest of the project. Thirdly I also now know just who to pester in the right departments to get even more data. Finally…..we now have A0 printouts of these graphs plastered around the office walls – I certainly didn’t envisage using course data as wallpaper when I started on this project.

Being able to quickly see the connections between modules, particularly where one module is used for multiple awards could be very useful for those involved in curriculum planning. Obviously I’m not suggesting that they consult one of these A0 posters to assess the impact of changing one module, but being able to quickly find the impact of changing it would be useful. Take for instance, a module that contains an element of group work. 5 courses use this module, 4 of which are run by one particular college, the 5th course is run by a completely separate college. 4 of the courses have far too much group work, it is decided, so the decision is made to remove the group work element from the module. Do those involved in the decision know that the module is used by a course in College B, and, that the module is the only element of group work within a year’s study on the course? Removing the group work element would mean that the course doesn’t contain all of the required elements to be re-validated, obviously causing problems further down the line. Combining the data used to produce the visualisations above, along with other datasources could help to resolve this issue.

So where to go from here? Well, abstracting slightly further from the course->module level, we (I) can start to compare inter-departmental and inter-disciplinary sharing of modules at a department, faculty or college level within the university. Combining with other data that we make available through data.lincoln, we can look at how departments share modules across the physical space of the campuses that make up the university (more on that in another blog post). Combining the data with student numbers, we can look at the subscription levels to the modules that form a focal point to multiple awards. If / when I can get hold of full datasets for learning outcomes & module descriptors, I can start to look at modules that don’t necessarily share any course in common, but may be similar in terms of the learning outcomes they address or the topics they cover (as described in the module descriptions). There really are many ways to combine all of the information that I’m starting to stumble across and it is just a case of finding interesting combinations of datasets and assessing how useful the results are.

As a result of this digging around and tidying up of various data sources, all of the data that can be made accessible through data.lincoln will be made available – in a nice format, unlike the multitude of document types and messy data that I’ve been dealing with recently.

Any suggestions of ways to mash-up some data or ideas about new visualisations, feel free to leave me a comment or three below!