Figure 3.

Microarray accuracy rate and base calling. (a) Microarray base calling accuracy rate was calculated by comparing microarray base
calls with sequence data for five parasite genomes. At more stringent discrimination
scores, accuracy rate increased. SNP subsets demonstrate greater performance than
average if those SNPs are more amenable to hybridization-based interrogation (NIH
and Broad subsets). (b) Mean number of base calls produced at various Dscore cutoffs for all SNP loci and for SNP subsets from previously published microarray
platforms (NIH and Broad).