A compressed index of collections of genomes of the same species. MuGI reports all occurrences of a given pattern, in exact and approximate matching model, against a collection of thousand(s) genomes. Its unique feature is the small index size, which is customizable.

Publication for Multiple Genome Index

Institute of Informatics, Silesian University of Technology, Gliwice, Poland; Institute of Applied Computer Science, Lodz University of Technology, Łόdź, Poland

MuGI funding source(s)

The work was supported by the Polish Ministry of Science and Higher Education under the project DEC-2013/09/B/ST6/03117 and European Social Fund project UDA-POKL.04.01.01-00-106/09. The work was performed using the infrastructure supported by POIG.02.03.01-24-099/13 grant: ‘‘GeCONiI---Upper Silesian Center for Computational Science and Engineering’’.