Assesses relationships between proteins rather than genes because amino acid identities provide a more robust signal at high levels of divergence. CodaChrome can be used to address questions of biological interest. It implements a custom max sampling algorithm that represents a field of pixels with a single pixel of the maximum value within the field. This tool is able to visualize the percent identities of amino acid alignments rather than nucleic acid alignments.

CodaChrome statistics

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[…] 2.0 [] website was used. in addition, selected genes were blastp against the pseudomonas dataset with e-values less than 1e-20 and with a minimum identity of 20%. these were then visualized using codachrome 1.1 []. whole-genome alignment was performed in two steps: first, we reordered contigs of pfv-like and pfv genomes against irri 6609 using mauve 2.3.1 [] under default parameters. locally […]

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