http://bugzilla.open-bio.org/show_bug.cgi?id=2159jcwang at cs.ucsd.edu changed:
What |Removed |Added
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CC| |jcwang at cs.ucsd.edu
------- Comment #5 from jcwang at cs.ucsd.edu 2006-12-05 16:42 -------
(In reply to comment #2)
> We need a few details to fix this before we will commit a change. What Bioperl
> version are you using? And could you attach an example XML blast report using
> the 'Create a New Attachment' link above? I would like trying to reproduce the
> bug.
>> There have been a few changes to SearchIO::blastxml parsing since the 1.5.1
> release (it now uses XML::SAX instead of XML::Parser), so you could try
> updating from CVS to see if that fixes it. Or if you are patient enough, Sendu
> is about to package up the final 1.5.2 release.
>
I am using bioperl version 1.5.2. I am using the XML::SAX package to parse. I
have attached a sample blast xml output and a perl file that uses SearchIO.
Notice that the hit description is not correct.
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