Running DE Workflow

This part will do the differentially expressed gene analysis. We use different method for conditions with replicate(there are more than one sample for at least one condition) and without replicate(only one sample for one condition).

The input for the cases with replicate is the reads number falling into gene(this file can be produced by RSEQ part or by the user’s own method), the format is:

ZDHHC16 chr10 + 205
CTNNA3 chr10 – 6
CCDC147 chr10 + 19

The input for the cases without replicate is the reads number falling into exon(this file can be produced by RSEQ part or by the user’s own method), the format is: