STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:query proteins and first shell of interactors

white nodes:second shell of interactors

Node Content

empty nodes:proteins of unknown 3D structure

filled nodes:some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RB2654_18328

Uncharacterized protein (116 aa)

Predicted Functional Partners:

trpC

Indole-3-glycerol phosphate synthase (266 aa)

0.900

trpD

Anthranilate phosphoribosyltransferase ; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5’-phosphoribosyl)-anthranilate (PRA) (339 aa)

0.900

trpF

N-(5’-phosphoribosyl)anthranilate isomerase (212 aa)

0.867

himD

Integration host factor subunit beta ; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control (93 aa)

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1

node2

node1 accession

node2 accession

node1 annotation

node2 annotation

score

RB2654_04844

RB2654_05867

RB2654_04844

RB2654_05867

Uncharacterized protein

Phasin, PhaP

0.767

RB2654_04844

RB2654_18328

RB2654_04844

RB2654_18328

Uncharacterized protein

Uncharacterized protein

0.728

RB2654_05867

RB2654_04844

RB2654_05867

RB2654_04844

Phasin, PhaP

Uncharacterized protein

0.767

RB2654_05867

RB2654_07681

RB2654_05867

RB2654_07681

Phasin, PhaP

Uncharacterized protein

0.697

RB2654_05867

RB2654_13299

RB2654_05867

RB2654_13299

Phasin, PhaP

ABC transporter, permease protein

0.603

RB2654_05867

RB2654_18328

RB2654_05867

RB2654_18328

Phasin, PhaP

Uncharacterized protein

0.766

RB2654_07681

RB2654_05867

RB2654_07681

RB2654_05867

Uncharacterized protein

Phasin, PhaP

0.697

RB2654_07681

RB2654_13299

RB2654_07681

RB2654_13299

Uncharacterized protein

ABC transporter, permease protein

0.778

RB2654_07681

RB2654_18328

RB2654_07681

RB2654_18328

Uncharacterized protein

Uncharacterized protein

0.752

RB2654_13299

RB2654_05867

RB2654_13299

RB2654_05867

ABC transporter, permease protein

Phasin, PhaP

0.603

RB2654_13299

RB2654_07681

RB2654_13299

RB2654_07681

ABC transporter, permease protein

Uncharacterized protein

0.778

RB2654_13299

RB2654_18328

RB2654_13299

RB2654_18328

ABC transporter, permease protein

Uncharacterized protein

0.755

RB2654_18328

RB2654_04844

RB2654_18328

RB2654_04844

Uncharacterized protein

Uncharacterized protein

0.728

RB2654_18328

RB2654_05867

RB2654_18328

RB2654_05867

Uncharacterized protein

Phasin, PhaP

0.766

RB2654_18328

RB2654_07681

RB2654_18328

RB2654_07681

Uncharacterized protein

Uncharacterized protein

0.752

RB2654_18328

RB2654_13299

RB2654_18328

RB2654_13299

Uncharacterized protein

ABC transporter, permease protein

0.755

RB2654_18328

RB2654_18338

RB2654_18328

RB2654_18338

Uncharacterized protein

Putative aromatic pathway regulator

0.842

RB2654_18328

RB2654_18343

RB2654_18328

RB2654_18343

Uncharacterized protein

Uncharacterized protein

0.724

RB2654_18328

himD

RB2654_18328

RB2654_18323

Uncharacterized protein

Integration host factor subunit beta ; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

0.856

RB2654_18328

trpC

RB2654_18328

RB2654_04711

Uncharacterized protein

Indole-3-glycerol phosphate synthase

0.900

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Network Stats

Network Stats analysis is still ongoing, please wait ...

Functional enrichments in your networkNote: some enrichments may be expected here (why?)

Enrichment analysis is still ongoing, please wait ...

Statistical background

For the above enrichment analysis, the following statistical background is assumed: