... So I did a DESeq2 analysis with R and I dont understand the meanings of the Loci generated when I run > `head(result)`
What is the difference between this result and the result generated with all the representative loci included?
Thanks ...

... Hello, I currently have a TE.bed file that contains scaffold names not identical to those in the genome i am currently using. I am looking for a reliable tool to help generate all TE categories. I tried repeatmasker but I dont like the output file as only simple repeats and low-complexity TEs were c ...

... So I somehow managed to play around different databases since the ncbi was still confusing and finally found the floridae database were I downloaded the fa file. but the fasta headers look like this >112690 >257564 etc. I want to convert this to a bed file. but the loci names in my original ge ...

... Hey all,
I would like to obtain or download mRNA data for an organism ( Amphioxus) is there a database where I can get it? ncbi was suggested but I couldn't navigate to it. can someone guide me or share a link please? I tried one guide on here and wasn't successful. Thanks ...

... Thanks for your suggestion. have looked at the coldata and cts data. I have tried to adjust it in different ways but I am getting the same error and its frustrating. However, in my count data, if I remove the loci column, it generates my graph as expected, but I do need the loci info to be in the l ...

... Hey all, I recently succesfull rna DESeq2 analysis succesfully but I mad changes to my count table and wanting to rerun it in R. I encountered an error as before and followed all the steps I have written down in my documentation but still getting the error when I try to make dds. I could not figure ...