Can I remove WIN98SE after W2K Clean Install?

I tried to do a clean install of W2K, but the setup said it needed to be run under windows. I installed WIN98SE standard install. I then ran W2K with the clean install option, not the update option. I have now updated to SVC Pack 4 and all the updates.

WINNT is the standard W2K folder.
WINDOWS is the WIN98SE folder
Can I delete the Windows folder that contains WIN98SE?
I do not want a dual OS or the children running the old system.

My gut feeling is there is not a problem, but I need to KNOW before giving the kids the system. Of course, they were expecting the system last week, so this question falls under the urgency category

I had the same problem and found the solution here. I deleted the XP folder from the default OS (Windows 2000 Pro) and changed the boot.ini file. check this URL for how to do it. At the end, you will no longer have two choices when you boot windows.

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