In the immediate aftermath of the news that Osama bin Laden had been killed, one of the key questions asked by journalists and policymakers was about Pakistan’s complicity – or the lack thereof. At the center of this political firestorm is Pakistan’s military and intelligence services, a key domestic political constituency. The Pakistani people and the press are now asking themselves the same uncomfortable questions that were asked about the CIA’s assessments of Saddam Hussein’s nonexistent WMDs: did we get it wrong because of incompetence or because we knew about it and looked the other way? A secondary question, and perhaps bigger in terms of domestic politics, that has emerged in Pakistan: how did American helicopters loaded with Navy SEALs fly into Pakistani airspace and carry out a 40-minute raid without anyone in the national security apparatus noticing?

Given what we now know about how and where Bin Laden was living makes a decade’s worth of denials from Pakistani leaders ring hollow. However, somebody in the American intelligence community suspected something long before the chilling of U.S.-Pakistani relations of the recent past and last Sunday’s raid. Bill Maher recently dug up a clip from his show from October of 2008 in which then-CNN correspondent Christiane Amanpour said “I just talked to somebody very knowledgeable. She doesn’t think, this woman who is in American intelligence, thinks that he’s [Osama bin Laden] in a villa, a nice comfortable villa in Pakistan, not a cave.”

The criticism and second-guessing of Pakistan has been blistering and relentless since last Sunday. Steve Coll wrote, “The initial circumstantial evidence suggests… that bin Laden was effectively being housed under Pakistani state control.” President Obama’s counterterrorism adviser John Brennan told reporters, “I think it is inconceivable that bin Laden didn’t have a support system in the country that allowed him to remain there for an extended period of time.”

It’s worth keeping in mind that Bin Laden is not the only senior Al Qaeda member to have been caught in an urban area of Pakistan. Khalid Sheikh Mohammed and Abu Faraj al-Libi were apprehended in Rawalpindi and Mardan, respectively, with Pakistani involvement in both operations.

Unfortunately for the Pakistanis, their long track record of denials about Bin Laden’s presence in their country, and the “double game” played by the government – supporting the U.S. effort against Al Qaeda, while at the same time supporting the Taliban and the Haqqani network – means that the burden will be on them to prove that they didn’t know. This essentially forces them to prove a negative, something which is very difficult to do effectively and beyond dispute.

Pakistan’s intelligence service is already in full-blown damage control mode. ISI chief Lt. Gen. Ahmad Shuja Pasha is heading to Washington to offer explanations. The Daily Beast recently reported that Pasha may step down as the government’s fall guy over the Bin Laden intelligence failure. Pakistan’s embarrassment over the Bin Laden episode may give the United States some political and diplomatic leverage in the short term – perhaps in the form of renewed pressure for actionable intelligence on Mullah Omar or Ayman al-Zawahiri. Expect the U.S.-Pakistan relationship to remain frosty at least until the Pakistanis are able to convince the Obama administration and Congress that they didn’t know Bin Laden’s whereabouts. However, if evidence emerges that people in the Pakistani government knew about his location and withheld that information from the United States, it will be a whole new ball game.

Update III: Husain Haqqani, Pakistan’s ambassador in Washington, sent out a tweet shooting down the story: “NO, The Nation just ran made up name 4 CIA Stn Chief in I’abad in made up story abt DG ISI’s travels.”

Update IV: Correction. A previous version of this inaccurately referred to Abbottabad as a suburb of the Pakistani capital city of Islamabad. According to Google Maps, Abbottabad is approximately 70 miles to the north. Thanks to Huffington Post reader Kazim Nawab for pointing that out.

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