Actually if you are going to arm him, his Timelord weaponry would be a rather powerful blaster pistol .

Oh and his ship could be a battle tardis; small but as powerful as a capital ship; very fast hyperspace and normal drive, and can deploy Galifrean defence drones (use similar ability to the starviper drones, but more damaging)

alright my bad... but what do you think about it? Also i just thought of a great ship that was in Doctor Who that can be used in space or land how ever you see fit. Did you see that one where there was a HUGE air craft career in the sky? that was also the right after The Grand "Master" came into play and took over Earth...