GO:0023035 CD40 signaling pathway

Term Information

ID

GO:0023035

Name

CD40 signaling pathway

Ontology

Biological Process

Definition

A series of molecular signals initiated by the binding of the cell surface receptor CD40 to one of its physiological ligands, and ending with regulation of a downstream cellular process, e.g. transcription.
PMID:11348017

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
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Type

Synonym

exact

CD40 signalling pathway

GO Discussions

The GO editorial group is intending to improve the information provided in this area of the GO.

If you would like to be involved in discussions regarding this development activity, please email the GO Consortium.

Please note that it is still appropriate to use this term for curation or analysis purposes.

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Gene Product ID

Symbol

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GO Identifier

GO Term Name

Aspect

Original GO ID

Original GO Term Name

Evidence

Reference

With

Taxon

Date

Assigned By

Product Form ID

Name

Synonym

Type

Taxon Name

Sequence

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ID Mapping

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Database Code

Database Name

UniProtKB

Universal Protein Knowledgebase

UniProtKB/Swiss-Prot

UniProtKB/TrEMBL

CGD

Candida Genome Database

dictyBase

dictyBase

EcoCyc

Encyclopedia of E. coli metabolism

EMBL

EMBL Nucleotide Sequence Database

ENSEMBL_GeneID

Ensembl database of automatically annotated genomic data

ENSEMBL_ProteinID

Ensembl database of automatically annotated genomic data

ENSEMBL_TranscriptID

Ensembl database of automatically annotated genomic data

FB

FlyBase

GeneDB

GeneDB

GeneID

NCBI Gene

GR

Gramene

HGNC

HUGO Gene Nomenclature Committee

MGI

Mouse Genome Informatics

MIM

Mendelian Inheritance in Man

PomBase

PomBase

RefSeq

RefSeq

RGD

Rat Genome Database

SGD

Saccharomyces Genome Database

TAIR

The Arabidopsis Information Resource

TIGR_CMR

EGAD database at the J. Craig Venter Institute

UniGene

UniGene

WB

WormBase database of nematode biology

ZFIN

Zebrafish Information Network

QuickGO maps between different identifier types by using a combination of mapping files provided by the databases, and using identifier cross-references supplied by UniProtKB.

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Filter

Summary

summary

The tabs in this dialog allow you to filter the set of GO annotations that QuickGO displays.
You can apply multiple filtering parameters to restrict the set of annotations to those that match, for example:

a list of gene/protein identifiers (ID)

gene products from specified taxonomic groups (Taxon)

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annotations that have been supplied by a particular GO annotation group

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Gene Product ID

proteinID

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The Qualifier column in a GO annotation is used for flags that modify the interpretation of an annotation. Allowable values are NOT, contributes_to, and colocalizes_with.

Further details on the usage of the qualifier column can be found here.

contributes_to

An individual protein that is part of a complex can be annotated to terms that describe the action of the complex. This qualifier allows us to distinguish individual subunit from complex functions e.g. This protein contributes_to 'ribosome binding' when part of a complex but does not perform this function on its own.

NOT|colocalizes_with

NOT|colocalizes_with

NOT|contributes_to

NOT|contributes_to

colocalizes_with

Proteins that are transiently or peripherally associated with an organelle or complex may be annotated to the relevant cellular component term, using the 'colocalizes_with' qualifier.

NOT

Used to make an explicit note that the protein is not associated with the GO term e.g. This protein does NOT have 'kinase activity' as expected, disrupted/missing ATP binding domain.

Change Log

All changes

A series of molecular signals initiated by the binding of the cell surface receptor CD40 to one of its physiological ligands, and ending with regulation of a downstream cellular process, e.g. transcription.

Term

Definition/synonyms

A series of molecular signals initiated by the binding of the cell surface receptor CD40 to one of its physiological ligands, and ending with regulation of a downstream cellular process, e.g. transcription.