Oryza barthii vs Oryza sativa Japonica Group LastZ Results

Oryza barthii (Oryza barthii, O.barthii_v1) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release 76. Oryza barthii was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 313,253

Genome coverage (bp)

Coding exon coverage (bp)

Oryza barthii

Uncovered: 29,707,290 out of 308,272,304Covered: 278,565,014 out of 308,272,304

Uncovered: 1,324,190 out of 39,538,509Matches: 32,148,806 out of 39,538,509Mismatches: 5,918,002 out of 39,538,509Insertions: 147,511 out of 39,538,509

Oryza sativa Japonica Group

Uncovered: 82,315,766 out of 374,424,240Covered: 292,108,474 out of 374,424,240

Uncovered: 1,508,710 out of 34,124,807Matches: 27,132,159 out of 34,124,807Mismatches: 5,261,628 out of 34,124,807Insertions: 222,310 out of 34,124,807