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Today, polygonal models occur everywhere in graphical applications, since they are easy
to render and to compute and a very huge set of tools are existing for generation and
manipulation of polygonal data. But modern scanning devices that allow a high quality
and large scale acquisition of complex real world models often deliver a large set of
points as resulting data structure of the scanned surface. A direct triangulation of those
point clouds does not always result in good models. They often contain problems like
holes, self-intersections and non manifold structures. Also one often looses important
surface structures like sharp corners and edges during a usual surface reconstruction.
So it is suitable to stay a little longer in the point based world to analyze the point cloud
data with respect to such features and apply a surface reconstruction method afterwards
that is known to construct continuous and smooth surfaces and extend it to reconstruct
sharp features.

Knowledge discovery from large and complex collections of today’s scientific datasets is a challenging task. With the ability to measure and simulate more processes at increasingly finer spatial and temporal scales, the increasing number of data dimensions and data objects is presenting tremendous challenges for data analysis and effective data exploration methods and tools. Researchers are overwhelmed with data and standard tools are often insufficient to enable effective data analysis and knowledge discovery. The main objective of this thesis is to provide important new capabilities to accelerate scientific knowledge discovery form large, complex, and multivariate scientific data. The research covered in this thesis addresses these scientific challenges using a combination of scientific visualization, information visualization, automated data analysis, and other enabling technologies, such as efficient data management. The effectiveness of the proposed analysis methods is demonstrated via applications in two distinct scientific research fields, namely developmental biology and high-energy physics. Advances in microscopy, image analysis, and embryo registration enable for the first time measurement of gene expression at cellular resolution for entire organisms. Analysis of highdimensional spatial gene expression datasets is a challenging task. By integrating data clustering and visualization, analysis of complex, time-varying, spatial gene expression patterns and their formation becomes possible. The analysis framework MATLAB and the visualization have been integrated, making advanced analysis tools accessible to biologist and enabling bioinformatic researchers to directly integrate their analysis with the visualization. Laser wakefield particle accelerators (LWFAs) promise to be a new compact source of highenergy particles and radiation, with wide applications ranging from medicine to physics. To gain insight into the complex physical processes of particle acceleration, physicists model LWFAs computationally. The datasets produced by LWFA simulations are (i) extremely large, (ii) of varying spatial and temporal resolution, (iii) heterogeneous, and (iv) high-dimensional, making analysis and knowledge discovery from complex LWFA simulation data a challenging task. To address these challenges this thesis describes the integration of the visualization system VisIt and the state-of-the-art index/query system FastBit, enabling interactive visual exploration of extremely large three-dimensional particle datasets. Researchers are especially interested in beams of high-energy particles formed during the course of a simulation. This thesis describes novel methods for automatic detection and analysis of particle beams enabling a more accurate and efficient data analysis process. By integrating these automated analysis methods with visualization, this research enables more accurate, efficient, and effective analysis of LWFA simulation data than previously possible.

In urban planning, sophisticated simulation models are key tools to estimate future population growth for measuring the impact of planning decisions on urban developments and the environment. Simulated population projections usually result in large, macro-scale, multivariate geospatial data sets. Millions of records have to be processed, stored, and visualized to help planners explore and analyze complex population patterns. We introduce a database driven framework for visualizing geospatial multidimensional simulation data based on the output from UrbanSim, a software for the analysis and planning of urban developments. The designed framework is extendable and aims at integrating empirical-stochastic methods and urban simulation models with techniques developed for information visualization and cartography. First, we develop an empirical model for the estimation of residential building types based on demographic household characteristics. The predicted dwelling type information is important for the analysis of future material use, carbon footprint calculations, and for visualizing simultaneously the results of land usage, density, and other significant parameters in 3D space. Our model uses multinomial logistic regression to derive building types at different scales. The estimated regression coefficients are applied to UrbanSim output in order to predict residential building types. The simulation results and the estimated building types are managed in an object-relational geodatabase. From the database, density, building types, and significant demographic variables are visually encoded as scalable, georeferenced 3D geometries and displayed on top of aerial photographs in a Google Earth visual synthesis. The geodatabase can be accessed and the visualization parameters can be chosen through a web-based user interface. The geometries are encoded in KML, Google's markup language, as ready-to-visualize data sets. The goal is to enhance human cognition by displaying abstract representations of multidimensional data sets in a realistic context and thus to support decision making in planning processes.

The primary emphasis of this thesis concerns the extraction and representation of intrinsic properties of three-dimensional (3D) unorganized point clouds. The points establishing a point cloud as it mainly emerges from LiDaR (Light Detection and Ranging) scan devices or by reconstruction from two-dimensional (2D) image series represent discrete samples of real world objects. Depending on the type of scenery the data is generated from the resulting point cloud may exhibit a variety of different structures. Especially, in the case of environmental LiDaR scans the complexity of the corresponding point clouds is relatively high. Hence, finding new techniques allowing the efficient extraction and representation of the underlying structural entities becomes an important research issue of recent interest. This thesis introduces new methods regarding the extraction and visualization of structural features like surfaces and curves (e.g. ridge-lines, creases) from 3D (environmental) point clouds. One main part concerns the extraction of curve-like features from environmental point data sets. It provides a new method supporting a stable feature extraction by incorporating a probability-based point classification scheme that characterizes individual points regarding their affiliation to surface-, curve- and volume-like structures. Another part is concerned with the surface reconstruction from (environmental) point clouds exhibiting objects that are more or less complex. A new method providing multi-resolutional surface representations from regular point clouds is discussed. Following the applied principles of this approach a volumetric surface reconstruction method based on the proposed classification scheme is introduced. It allows the reconstruction of surfaces from highly unstructured and noisy point data sets. Furthermore, contributions in the field of reconstructing 3D point clouds from 2D image series are provided. In addition, a discussion concerning the most important properties of (environmental) point clouds with respect to feature extraction is presented.