Art in History, History in Art Studies in Seventeenth Century Dutch Culture, ed. by D. Freedberg and J. de Vries, Los Angeles: The Getty Center, 1992.

Joseph Kosuth: The Play of the Unmentionable, New York: The New Press, 1992.

Peter Paul Rubens. Oil Paintings and Oil Sketches. Catalogue with Essay of an Exhibition at the Gagosian Gallery, New York, 1995.

Citrus Fruit (The Paper Museum of Cassiano dal Pozzo. A Catalogue Raisonné. Drawings and Prints in the Royal Library at Windsor Castle, the British Museum, the Institut de France and other Collections. Series B. Natural History. Part One) (with E. Baldini), London: Harvey Miller, 1997.

Fossil Woods and other Geological Specimens. (The Paper Museum of Cassiano dal Pozzo. A Catalogue Raisonné. Drawings and Prints in the Royal Library at Windsor Castle, the British Museum, the Institut de France and other Collections. Series B. Natural History. Part Three) (with Andrew Scott), London: Harvey Miller, 2000.

The Eye of the Lynx: Art, Science and Nature in the Age of Galileo. Chicago: University of Chicago Press, 2002; paperback 2003; Italian translation (Bononia University Press), 2007.

Fungi. (The Paper Museum of Cassiano dal Pozzo. A Catalogue Raisonné. Drawings and Prints in the Royal Library at Windsor Castle, the British Museum, the Institut de France and other Collections. Series B. Natural History. Part Two) (with David Pegler), 3 volumes, London: The Royal Collection in association with Brepols, 2006.

„The Problem of Images in Northern Europe and its Repercussions in the Netherlands,“ Hafnia. Copenhagen Papers in the History of Art (Proceedings of the 7th International Colloquium in the History of Art), 1976, pp. 25-45

„Fame, Convention and Insight: On the Relevance of Fornenberg and Gerbier,“ The Ringling Museum of Art Journal, (Papers presented at the International Rubens Symposium, 1982), Sarasota: The Ringling Museum, 1983, pp. 236-259.

“Science, Commerce and Art: Neglected Topics at the junction of History and Art History”, in D. Freedberg and J. de Vries, eds., Art in History, History in Art. Studies in Seventeenth Century Dutch Culture, The Getty Center: Los Angeles, 1991. Updated and better-illustrated version published as “Science, Trade and Art”, in Paolo Herkenhoff,ed., Brazil and the Dutch 1630-1654, Rio de Janiero: Sextante Artes, 1999, pp. 192-217

„Holy Images and Other Images,“ in: The Art of Interpreting (Papers in Art History from the The Pennsylvania State University), Ed. Susan C. Scott, University Park (Pennsylvania): The Pennsylvania State University, 1996, pp. 68-87.

„Iconography between the History of Art and the History of Science: Art, Science and the Case of the Urban Bee,“ in Peter Galison and Caroline Jones, eds., Picturing Science Producing Art, London: Routledge, 1998, pp. 272-296.

“Art after Iconoclasm. Painting in the Netherlands between 1566 and 1585”, in K. Jonckheere and R. Suykerbuyk, eds., Art after Iconoclasm. Painting in the Netherlands between 1566 and 1585, Turnhout: Brepols, 2012, pp. 21-49.