Repacked FK23 with AGAT recovery v 0.22 apps disappearing

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I decided to try Agat's repack of FK23 kernel to get support for custom animation and init.d support. I know there are issues with the recovery for it, but I have titanium backup for apps etc. After installing via Mobile-Odin and rebooted every thing was working fine. However after rebooting into recovery (just to see it not do anything in it) and then rebooting I found all my paid for apps had disappeared. I went to the Google-play and went to download them and it would error saying it could not install to usb storage or sdcard. Luckily I had the one click of FL04-nodata and installed that a
(General)

For those of you who would like to run stock kernels with the builds
here is repacked FK23 kernel with my recovery and some init.rc edits.
SD card read speed.
Custom boot animation support
init.d support

Link:
AGAT_FK23_repack.tar Flash with ODIN or Mobile ODIN.

Did some edits in initramfs and run some tests.
Moved couple of apps to sd.