Loma Linda - make sure you agree with their lifestyle guidelines
UMDNJ's - from what I understand, these are not friendly to OOS at all
U Missouri KC - I believe they matriculate in January, so make sure you're okay with that

Wondering whether to apply:
MC Wisconsin
Loma Linda -- make sure you're okay with the lifestyle agreement
U of Missouri KC -- this is in the process of transitioning from being a BS/MD only program, and I don't think they're OOS-friendly at all.
Creighton
VA Commonwealth
V Tech Carillon
UMDNJ's -- not OOS-friendly
Connecticut -- takes small number of OOS
SUNY's
Stony Brook
Michigan State -- very high OOS tuition
Einstein
Rochester
Miami -- has a cutoff of 3.6 cGPA for OOS unless that recently changed

Reach:
Tufts
Dartmouth
Brown -- fills a lot of its class from its BS/MD program so not many spots are open for MD-only applicants
UPenn

.

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See comments above which may help you cut down your school list.

P.S. I know you probably just meant that your research thesis was great, but if your work actually was on creating super flies, that would be incredibly awesome.

Unfortunately just super-worms, no super-flies. They glowed. It was pretty awesome.

Thanks for the help!

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Ah...I did Drosophila work myself so I get kind of excited whenever I hear about cool fly research.

You seem to be coming at this the right way: You have a good upward trend, helped to redeem your GPA with a great MCAT, have solid ECs, and plan to apply broadly. I would be really surprised if you didn't get at least one acceptance. Good luck.