Questions tagged [qc]

Quality Check or Quality Control. The assessment of the quality of a product, data. For example, in sequencing data, the assessment of the quality of the bases. QC can also include the pre-processing of data to make it attain minimum quality requirements.

I'm using GATK4 to build a somatic variant calling pipeline. The pipeline uses MultiQC to aggregate quality control data, and one of the QC measures reported is base quality score recalibration from ...

I use cutadapt to remove low quality bases from my Illumina reads. The algorithm only removes low quality bases from the end until it reaches a good quality base. If there is a bad quality base beyond ...

I'm new to bioinformatics and Im starting a new microbial sequencing project and I'd like to record all of the qc data correctly. This is research and I'm not sure what I'll need later. Is there any ...