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My favorite Gen II Pokemon is probably... Feraligatr. It reminds me of one of my favorite video game characters, Malik Caesers, and it's my favorite out of all the Johto Starters. Out of the final forms of the Johto starters, Feraligatr is the only one that appealed to me. =P

Hoooo boy am I excited! I get to talk about one of my favorite pokemon today!!! Hurray!!!

Pointless rambling aside, my favorite Johto pokemon is without a doubt Umbreon, because I just LOVE his appearance. Seriously I love it, I really don't know how to explain what I love about it so much. Another reason is because Dark is my 3rd favorite type. Lastly, Umbreon is very nostalgic for me, you see, when I was nine or so, I went over to a friend's house and saw him playing Colloseum, and using his Umbreon and Espeon. I immediately fell in love with it on the spot, and asked my friend who that pokemon was. He said it was Umbreon, and I proceeded to obsess over Umbreon in the coming years, vowing to one day have him as a part of my team. Unfortunately, unless you count Pokemon Showdown, which I don't, I never did come across the cool looking dog/cat (not sure which really) until just VERY recently during my SoulSilver playthrough, which I got very recently too. I was overjoyed to have him, and I don't know why I haven't had him until now, but I do know this: I'm just past 5 badges, and no matter what, I will not toss Umbreon from my team no matter the consequences. No, he will venture with me all the way until we reach the hall of fame, come rain or shine!

Ah, I don't know how to choose. :'C I love my Ampharos to death, but I think that is that Pokemon in particular. If it was someone elses, it wouldn't be on my list of favourites. I love Umbreon, and Quilava. C: Oh, and Totodile. And Typhlosion and Cyndquil...

I get nostalgic with GSC every time, since Silver was my very first Pokemon game as a little kid. Feraligatr will always be my #1, since Totodile was my first solid starter (I reset the game by accident, since I didn't know there was a save command on the game back in those days). Then in 2nd is (arguably) Furret, 'cause for some reason it always appealed to me (especially in Stadium 2). Then 3rd, Ampharos, for its little story in Olivine City. And last, Espeon. I always liked its mysteriousness and (OMG!) its cry.
As far as legendaries, my favorites will always be Ho-oh and Raikou.

Favorite... Cyndaquil. Freaking cute and I just love its design a lot. Before I even got to play in the Johto region, I had already made my choice of Cyndaquil as being my favorite from all the starters and my favorite from all the Johto Region Pokemon. I love its evolutions as well; going from a pretty cute Pokemon to a very firce looking Pokemon ^_^

This is hard one :P
*goes to bulbapedia to look at a list of johto pokemon*
And the win goes to.... Miltank and Togekiss(though its not technically a johto pokemon)!
They have been one my all time favorite pokemon for a while now