Iron in the structure of Iron Storage and Electron Transport (pdb 1bfr)

The binding sites of Iron atom in the structure of Iron Storage and Electron Transport (pdb code 1bfr). This binding sites where shown with 5.0 Angstroms radius around Iron atom. The 1bfr structure was solved by A.DAUTANT, J.YARIV, J.B.MEYER, G.PRECIGOUX, R.M.SWEET, F.FROLOW, A.J.KALB(GILBOA), with X-Ray Crystallography technique, brief refinement statistics is given in the table below:

Resolution (A)

10.0-2.9

Space group

P1211

a (A)

118.700

b (A)

211.600

c (A)

123.300

alpha (°)

90.00

beta (°)

119.10

gamma (°)

90.00

Rfactor (%)

21.6

Rfree (%)

n/a

Iron Binding Sites:

Iron binding site 1 out of 12 in 1bfr

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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Iron in the PDB 1bfr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphereResidues shown as a stick model or VDW spheres: A: Met52, B: Met52, B: Hem200,

conact list:

Atom

Atom

Distance (A)

Fe

CB A:Met52

4.25

Fe

CE A:Met52

3.45

Fe

CG A:Met52

3.60

Fe

SD A:Met52

2.20

Fe

CB B:Met52

4.25

Fe

CE B:Met52

3.53

Fe

CG B:Met52

3.61

Fe

SD B:Met52

2.24

Fe

C2D B:Hem200

4.23

Fe

NC B:Hem200

1.98

Fe

CHB B:Hem200

3.42

Fe

CHC B:Hem200

3.40

Fe

C3D B:Hem200

4.22

Fe

NA B:Hem200

1.96

Fe

CHA B:Hem200

3.36

Fe

C2A B:Hem200

4.24

Fe

C1D B:Hem200

2.99

Fe

C4A B:Hem200

3.03

Fe

C4B B:Hem200

3.02

Fe

C3A B:Hem200

4.25

Fe

C4C B:Hem200

3.03

Fe

C2B B:Hem200

4.31

Fe

C1C B:Hem200

3.05

Fe

C2C B:Hem200

4.31

Fe

ND B:Hem200

1.94

Fe

CHD B:Hem200

3.38

Fe

C1B B:Hem200

3.05

Fe

NB B:Hem200

1.98

Fe

FE B:Hem200

0.00

Fe

C3C B:Hem200

4.29

Fe

C3B B:Hem200

4.26

Fe

C4D B:Hem200

2.98

Fe

C1A B:Hem200

3.00

interactive model:

Iron binding site 2 out of 12 in 1bfr

Click to enlarge

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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Iron in the PDB 1bfr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphereResidues shown as a stick model or VDW spheres: C: Met52, D: Met52, D: Hem200,

conact list:

Atom

Atom

Distance (A)

Fe

CB C:Met52

4.25

Fe

CE C:Met52

3.45

Fe

CG C:Met52

3.60

Fe

SD C:Met52

2.20

Fe

CB D:Met52

4.25

Fe

CE D:Met52

3.53

Fe

CG D:Met52

3.61

Fe

SD D:Met52

2.24

Fe

C2D D:Hem200

4.23

Fe

NC D:Hem200

1.98

Fe

CHB D:Hem200

3.42

Fe

CHC D:Hem200

3.40

Fe

C3D D:Hem200

4.22

Fe

NA D:Hem200

1.96

Fe

CHA D:Hem200

3.36

Fe

C2A D:Hem200

4.24

Fe

C1D D:Hem200

2.99

Fe

C4A D:Hem200

3.03

Fe

C4B D:Hem200

3.02

Fe

C3A D:Hem200

4.25

Fe

C4C D:Hem200

3.03

Fe

C2B D:Hem200

4.31

Fe

C1C D:Hem200

3.05

Fe

C2C D:Hem200

4.31

Fe

ND D:Hem200

1.94

Fe

CHD D:Hem200

3.38

Fe

C1B D:Hem200

3.05

Fe

NB D:Hem200

1.98

Fe

FE D:Hem200

0.00

Fe

C3C D:Hem200

4.29

Fe

C3B D:Hem200

4.26

Fe

C4D D:Hem200

2.98

Fe

C1A D:Hem200

3.00

interactive model:

Iron binding site 3 out of 12 in 1bfr

Click to enlarge

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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Iron in the PDB 1bfr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphereResidues shown as a stick model or VDW spheres: E: Met52, F: Met52, F: Hem200,

conact list:

Atom

Atom

Distance (A)

Fe

CB E:Met52

4.25

Fe

CE E:Met52

3.45

Fe

CG E:Met52

3.60

Fe

SD E:Met52

2.20

Fe

CB F:Met52

4.25

Fe

CE F:Met52

3.53

Fe

CG F:Met52

3.61

Fe

SD F:Met52

2.24

Fe

C2D F:Hem200

4.23

Fe

NC F:Hem200

1.98

Fe

CHB F:Hem200

3.42

Fe

CHC F:Hem200

3.40

Fe

C3D F:Hem200

4.22

Fe

NA F:Hem200

1.96

Fe

CHA F:Hem200

3.36

Fe

C2A F:Hem200

4.24

Fe

C1D F:Hem200

2.99

Fe

C4A F:Hem200

3.03

Fe

C4B F:Hem200

3.02

Fe

C3A F:Hem200

4.25

Fe

C4C F:Hem200

3.03

Fe

C2B F:Hem200

4.31

Fe

C1C F:Hem200

3.05

Fe

C2C F:Hem200

4.31

Fe

ND F:Hem200

1.94

Fe

CHD F:Hem200

3.38

Fe

C1B F:Hem200

3.05

Fe

NB F:Hem200

1.98

Fe

FE F:Hem200

0.00

Fe

C3C F:Hem200

4.29

Fe

C3B F:Hem200

4.26

Fe

C4D F:Hem200

2.98

Fe

C1A F:Hem200

3.00

interactive model:

Iron binding site 4 out of 12 in 1bfr

Click to enlarge

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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Iron in the PDB 1bfr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphereResidues shown as a stick model or VDW spheres: G: Met52, H: Met52, H: Hem200,

conact list:

Atom

Atom

Distance (A)

Fe

CB G:Met52

4.25

Fe

CE G:Met52

3.45

Fe

CG G:Met52

3.60

Fe

SD G:Met52

2.20

Fe

CB H:Met52

4.25

Fe

CE H:Met52

3.53

Fe

CG H:Met52

3.61

Fe

SD H:Met52

2.24

Fe

C2D H:Hem200

4.23

Fe

NC H:Hem200

1.98

Fe

CHB H:Hem200

3.42

Fe

CHC H:Hem200

3.40

Fe

C3D H:Hem200

4.22

Fe

NA H:Hem200

1.96

Fe

CHA H:Hem200

3.36

Fe

C2A H:Hem200

4.24

Fe

C1D H:Hem200

2.99

Fe

C4A H:Hem200

3.03

Fe

C4B H:Hem200

3.02

Fe

C3A H:Hem200

4.25

Fe

C4C H:Hem200

3.03

Fe

C2B H:Hem200

4.31

Fe

C1C H:Hem200

3.05

Fe

C2C H:Hem200

4.31

Fe

ND H:Hem200

1.94

Fe

CHD H:Hem200

3.38

Fe

C1B H:Hem200

3.05

Fe

NB H:Hem200

1.98

Fe

FE H:Hem200

0.00

Fe

C3C H:Hem200

4.28

Fe

C3B H:Hem200

4.26

Fe

C4D H:Hem200

2.98

Fe

C1A H:Hem200

3.00

interactive model:

Iron binding site 5 out of 12 in 1bfr

Click to enlarge

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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Iron in the PDB 1bfr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphereResidues shown as a stick model or VDW spheres: I: Met52, J: Met52, J: Hem200,

conact list:

Atom

Atom

Distance (A)

Fe

CB I:Met52

4.25

Fe

CE I:Met52

3.45

Fe

CG I:Met52

3.60

Fe

SD I:Met52

2.20

Fe

CB J:Met52

4.25

Fe

CE J:Met52

3.53

Fe

CG J:Met52

3.61

Fe

SD J:Met52

2.25

Fe

C2D J:Hem200

4.23

Fe

NC J:Hem200

1.98

Fe

CHB J:Hem200

3.42

Fe

CHC J:Hem200

3.40

Fe

C3D J:Hem200

4.22

Fe

NA J:Hem200

1.96

Fe

CHA J:Hem200

3.36

Fe

C2A J:Hem200

4.24

Fe

C1D J:Hem200

2.99

Fe

C4A J:Hem200

3.03

Fe

C4B J:Hem200

3.02

Fe

C3A J:Hem200

4.25

Fe

C4C J:Hem200

3.03

Fe

C2B J:Hem200

4.31

Fe

C1C J:Hem200

3.05

Fe

C2C J:Hem200

4.31

Fe

ND J:Hem200

1.94

Fe

CHD J:Hem200

3.38

Fe

C1B J:Hem200

3.05

Fe

NB J:Hem200

1.98

Fe

FE J:Hem200

0.00

Fe

C3C J:Hem200

4.28

Fe

C3B J:Hem200

4.26

Fe

C4D J:Hem200

2.98

Fe

C1A J:Hem200

3.00

interactive model:

Iron binding site 6 out of 12 in 1bfr

Click to enlarge

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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Iron in the PDB 1bfr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphereResidues shown as a stick model or VDW spheres: K: Met52, L: Met52, L: Hem200,

conact list:

Atom

Atom

Distance (A)

Fe

CB K:Met52

4.25

Fe

CE K:Met52

3.45

Fe

CG K:Met52

3.60

Fe

SD K:Met52

2.20

Fe

CB L:Met52

4.25

Fe

CE L:Met52

3.53

Fe

CG L:Met52

3.61

Fe

SD L:Met52

2.25

Fe

C2D L:Hem200

4.23

Fe

NC L:Hem200

1.98

Fe

CHB L:Hem200

3.42

Fe

CHC L:Hem200

3.40

Fe

C3D L:Hem200

4.22

Fe

NA L:Hem200

1.96

Fe

CHA L:Hem200

3.36

Fe

C2A L:Hem200

4.24

Fe

C1D L:Hem200

2.99

Fe

C4A L:Hem200

3.03

Fe

C4B L:Hem200

3.02

Fe

C3A L:Hem200

4.25

Fe

C4C L:Hem200

3.03

Fe

C2B L:Hem200

4.31

Fe

C1C L:Hem200

3.05

Fe

C2C L:Hem200

4.31

Fe

ND L:Hem200

1.94

Fe

CHD L:Hem200

3.38

Fe

C1B L:Hem200

3.05

Fe

NB L:Hem200

1.98

Fe

FE L:Hem200

0.00

Fe

C3C L:Hem200

4.29

Fe

C3B L:Hem200

4.26

Fe

C4D L:Hem200

2.98

Fe

C1A L:Hem200

3.00

interactive model:

Iron binding site 7 out of 12 in 1bfr

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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Iron in the PDB 1bfr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphereResidues shown as a stick model or VDW spheres: M: Met52, N: Met52, N: Hem200,

conact list:

Atom

Atom

Distance (A)

Fe

CB M:Met52

4.25

Fe

CE M:Met52

3.45

Fe

CG M:Met52

3.60

Fe

SD M:Met52

2.20

Fe

CB N:Met52

4.25

Fe

CE N:Met52

3.53

Fe

CG N:Met52

3.61

Fe

SD N:Met52

2.24

Fe

C2D N:Hem200

4.23

Fe

NC N:Hem200

1.98

Fe

CHB N:Hem200

3.42

Fe

CHC N:Hem200

3.40

Fe

C3D N:Hem200

4.22

Fe

NA N:Hem200

1.96

Fe

CHA N:Hem200

3.36

Fe

C2A N:Hem200

4.24

Fe

C1D N:Hem200

2.99

Fe

C4A N:Hem200

3.03

Fe

C4B N:Hem200

3.02

Fe

C3A N:Hem200

4.25

Fe

C4C N:Hem200

3.03

Fe

C2B N:Hem200

4.31

Fe

C1C N:Hem200

3.05

Fe

C2C N:Hem200

4.31

Fe

ND N:Hem200

1.94

Fe

CHD N:Hem200

3.38

Fe

C1B N:Hem200

3.05

Fe

NB N:Hem200

1.98

Fe

FE N:Hem200

0.00

Fe

C3C N:Hem200

4.28

Fe

C3B N:Hem200

4.26

Fe

C4D N:Hem200

2.98

Fe

C1A N:Hem200

3.00

interactive model:

Iron binding site 8 out of 12 in 1bfr

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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Iron in the PDB 1bfr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphereResidues shown as a stick model or VDW spheres: O: Met52, P: Met52, P: Hem200,

conact list:

Atom

Atom

Distance (A)

Fe

CB O:Met52

4.25

Fe

CE O:Met52

3.45

Fe

CG O:Met52

3.60

Fe

SD O:Met52

2.20

Fe

CB P:Met52

4.25

Fe

CE P:Met52

3.53

Fe

CG P:Met52

3.61

Fe

SD P:Met52

2.24

Fe

C2D P:Hem200

4.23

Fe

NC P:Hem200

1.98

Fe

CHB P:Hem200

3.42

Fe

CHC P:Hem200

3.40

Fe

C3D P:Hem200

4.22

Fe

NA P:Hem200

1.96

Fe

CHA P:Hem200

3.36

Fe

C2A P:Hem200

4.23

Fe

C1D P:Hem200

2.99

Fe

C4A P:Hem200

3.03

Fe

C4B P:Hem200

3.02

Fe

C3A P:Hem200

4.25

Fe

C4C P:Hem200

3.03

Fe

C2B P:Hem200

4.31

Fe

C1C P:Hem200

3.05

Fe

C2C P:Hem200

4.31

Fe

ND P:Hem200

1.94

Fe

CHD P:Hem200

3.38

Fe

C1B P:Hem200

3.05

Fe

NB P:Hem200

1.98

Fe

FE P:Hem200

0.00

Fe

C3C P:Hem200

4.29

Fe

C3B P:Hem200

4.26

Fe

C4D P:Hem200

2.98

Fe

C1A P:Hem200

3.00

interactive model:

Iron binding site 9 out of 12 in 1bfr

Click to enlarge

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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Iron in the PDB 1bfr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphereResidues shown as a stick model or VDW spheres: Q: Met52, R: Met52, R: Hem200,

conact list:

Atom

Atom

Distance (A)

Fe

CB Q:Met52

4.25

Fe

CE Q:Met52

3.45

Fe

CG Q:Met52

3.60

Fe

SD Q:Met52

2.20

Fe

CB R:Met52

4.25

Fe

CE R:Met52

3.53

Fe

CG R:Met52

3.61

Fe

SD R:Met52

2.24

Fe

C2D R:Hem200

4.23

Fe

NC R:Hem200

1.98

Fe

CHB R:Hem200

3.42

Fe

CHC R:Hem200

3.40

Fe

C3D R:Hem200

4.22

Fe

NA R:Hem200

1.96

Fe

CHA R:Hem200

3.36

Fe

C2A R:Hem200

4.24

Fe

C1D R:Hem200

2.99

Fe

C4A R:Hem200

3.03

Fe

C4B R:Hem200

3.02

Fe

C3A R:Hem200

4.25

Fe

C4C R:Hem200

3.03

Fe

C2B R:Hem200

4.31

Fe

C1C R:Hem200

3.05

Fe

C2C R:Hem200

4.31

Fe

ND R:Hem200

1.94

Fe

CHD R:Hem200

3.38

Fe

C1B R:Hem200

3.05

Fe

NB R:Hem200

1.98

Fe

FE R:Hem200

0.00

Fe

C3C R:Hem200

4.29

Fe

C3B R:Hem200

4.26

Fe

C4D R:Hem200

2.98

Fe

C1A R:Hem200

3.00

interactive model:

Iron binding site 10 out of 12 in 1bfr

Click to enlarge

Click to enlarge

Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Iron in the PDB 1bfr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphereResidues shown as a stick model or VDW spheres: S: Met52, T: Met52, T: Hem200,

conact list:

Atom

Atom

Distance (A)

Fe

CB S:Met52

4.25

Fe

CE S:Met52

3.45

Fe

CG S:Met52

3.60

Fe

SD S:Met52

2.20

Fe

CB T:Met52

4.25

Fe

CE T:Met52

3.53

Fe

CG T:Met52

3.61

Fe

SD T:Met52

2.24

Fe

C2D T:Hem200

4.23

Fe

NC T:Hem200

1.98

Fe

CHB T:Hem200

3.42

Fe

CHC T:Hem200

3.40

Fe

C3D T:Hem200

4.22

Fe

NA T:Hem200

1.96

Fe

CHA T:Hem200

3.36

Fe

C2A T:Hem200

4.24

Fe

C1D T:Hem200

2.99

Fe

C4A T:Hem200

3.03

Fe

C4B T:Hem200

3.02

Fe

C3A T:Hem200

4.25

Fe

C4C T:Hem200

3.03

Fe

C2B T:Hem200

4.31

Fe

C1C T:Hem200

3.05

Fe

C2C T:Hem200

4.31

Fe

ND T:Hem200

1.94

Fe

CHD T:Hem200

3.38

Fe

C1B T:Hem200

3.05

Fe

NB T:Hem200

1.98

Fe

FE T:Hem200

0.00

Fe

C3C T:Hem200

4.29

Fe

C3B T:Hem200

4.26

Fe

C4D T:Hem200

2.98

Fe

C1A T:Hem200

3.00

interactive model:

Iron binding site 11 out of 12 in 1bfr

Click to enlarge

Click to enlarge

Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Iron in the PDB 1bfr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphereResidues shown as a stick model or VDW spheres: U: Met52, V: Met52, V: Hem200,

conact list:

Atom

Atom

Distance (A)

Fe

CB U:Met52

4.25

Fe

CE U:Met52

3.45

Fe

CG U:Met52

3.60

Fe

SD U:Met52

2.20

Fe

CB V:Met52

4.25

Fe

CE V:Met52

3.53

Fe

CG V:Met52

3.61

Fe

SD V:Met52

2.24

Fe

C2D V:Hem200

4.23

Fe

NC V:Hem200

1.98

Fe

CHB V:Hem200

3.42

Fe

CHC V:Hem200

3.40

Fe

C3D V:Hem200

4.22

Fe

NA V:Hem200

1.96

Fe

CHA V:Hem200

3.36

Fe

C2A V:Hem200

4.24

Fe

C1D V:Hem200

2.99

Fe

C4A V:Hem200

3.03

Fe

C4B V:Hem200

3.02

Fe

C3A V:Hem200

4.25

Fe

C4C V:Hem200

3.03

Fe

C2B V:Hem200

4.31

Fe

C1C V:Hem200

3.05

Fe

C2C V:Hem200

4.31

Fe

ND V:Hem200

1.94

Fe

CHD V:Hem200

3.38

Fe

C1B V:Hem200

3.05

Fe

NB V:Hem200

1.98

Fe

FE V:Hem200

0.00

Fe

C3C V:Hem200

4.29

Fe

C3B V:Hem200

4.26

Fe

C4D V:Hem200

2.98

Fe

C1A V:Hem200

3.00

interactive model:

Iron binding site 12 out of 12 in 1bfr

Click to enlarge

Click to enlarge

Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Iron in the PDB 1bfr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphereResidues shown as a stick model or VDW spheres: W: Met52, X: Met52, X: Hem200,