I'm a C1 noob and in the beginning I also had some annoying situations where my images wasn't processed (I thought) .. it turned out that C1 was busy building proxies for all the new images I had loaded and the processing of my images was just waiting in the queue. So, in the start I got quite a few processed copies with suffix 1, 2, 3, 4, ... now I've become a little more patient

You're probably best going straight to Phase One with a support case, Jmyerz - you're definitely not seeing normal behaviour there, and the Phase One team are pretty good at turning problems around quickly.

But as a matter of interest - what's your OS and machine spec? And which camera(s) are you seeing this behaviour with?

After a lengthy back and forth with Phase One, and some mysteries I fixed my problem. My theory is that when I upgraded to the cougar OS it caused some corruption as my Hard drive needed a lengthydisk utility disk repair. Even after the repair C1 would not behave and had more issues than before!

After I repaired the drive, I deactivated and un installed C1. I removed all C1 files in the system library,EVERYTHING, by hand.