Oryza sativa Japonica Group vs Leersia perrieri LastZ Results

Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Leersia perrieri (Leersia perrieri, Lperr_V1.4) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release 75. Oryza sativa Japonica Group was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 260,363

Genome coverage (bp)

Coding exon coverage (bp)

Oryza sativa Japonica Group

Uncovered: 227,825,844 out of 373,245,519Covered: 145,419,675 out of 373,245,519

Uncovered: 4,454,953 out of 44,520,596Matches: 33,715,443 out of 44,520,596Mismatches: 5,300,802 out of 44,520,596Insertions: 1,049,398 out of 44,520,596

Leersia perrieri

Uncovered: 150,308,343 out of 266,687,832Covered: 116,379,489 out of 266,687,832

Uncovered: 4,680,218 out of 36,899,367Matches: 28,018,184 out of 36,899,367Mismatches: 3,633,392 out of 36,899,367Insertions: 567,573 out of 36,899,367