The typical SUNY Upstate Medical University Clinical Assistant Instructor/Medical Resident salary is $55,572. Clinical Assistant Instructor/Medical Resident salaries at SUNY Upstate Medical University can range from $48,483-$61,087. This estimate is based upon 6 SUNY Upstate Medical University Clinical Assistant Instructor/Medical Resident salary report(s) provided by employees or estimated based upon statistical methods. See all Clinical Assistant Instructor/Medical Resident salaries to learn how this stacks up in the market.