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How do I find more details about a differential expression experiment?

Submitted by ggiraldo on Wed, 2018-04-18 13:40

Answer:

In the Expression Browser, the Expression report page has a brief overview with links about each experiment for the gene of interest, e.g., AGAP001111

Each experiment is presented in a row. Notice each experiment has three links, i.e., Microarray/RNAseq experiment info, Plots and data and, details. Click on Microarray/RNAseq experiment info.

Among other details, the experiment page contains link to a publication (look for the PubMed link).

You can find detailed information about each sample used in an experiment (e.g. which strain of insects were used, how old they were, etc) by clicking on the hybridisation or sequencing runs table links near the bottom of the experiment page. If you are in the plots and tables page, the spot data or ref transcript data links are also at the bottom of the pages.

This project has been funded in whole or in part with Federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract No. HHSN272201400029C.