Later in 1922, Stratos, along with Gounaris, Protopapadakis and others were charged, tried and convicted for the loss of the war in Asia Minor in what was known as the Trial of the Six. Stratos was executed at Goudi on 15 November 1922.

His son, Andreas Stratos, became a prominent politician and historian, while his daughter, Dora Stratou, became an actress and important promoter of Greek folk music and dances.