February 25, 2014

Create a GENCODE transcript database in R

The following gist will help the researchers in creating the gencode transcript database using the bioconductor packages. I am assuming that the user's computer has preinstalled packages "GenomicRanges" and "GenomicFeatures". Following script has the following information:

loads the needs bioconductor packages

gives information about creating the intermediate files needed for generating the database