Oryza glumipatula vs Oryza sativa Japonica Group LastZ Results

Oryza glumipatula (Oryza glumipatula, Oryza_glumaepatula_v1.5) and Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release 76. Oryza glumipatula was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 183,304

Genome coverage (bp)

Coding exon coverage (bp)

Oryza glumipatula

Uncovered: 123,035,665 out of 372,860,283Covered: 249,824,618 out of 372,860,283

Uncovered: 3,822,079 out of 41,246,944Matches: 36,774,153 out of 41,246,944Mismatches: 519,587 out of 41,246,944Insertions: 131,125 out of 41,246,944

Oryza sativa Japonica Group

Uncovered: 89,461,715 out of 374,424,240Covered: 284,962,525 out of 374,424,240

Uncovered: 2,116,270 out of 34,124,807Matches: 31,243,977 out of 34,124,807Mismatches: 632,857 out of 34,124,807Insertions: 131,703 out of 34,124,807