This happens all of the time, so let's make a huge list. These are the ones that immediately come to mind.

Set Your Goals (CIV album Set Your Goals)
This Time Next Year (The Movielife album This Time Next Year)
The Story So Far (New Found Glory song The Story So Far)
All Time Low (New Found Glory's song Head On Collision)

Like Moths to Flames - Thrice song
Four Year Strong - reference to a lyric in a Get Up Kids song Michelle With One L
Texas is the Reason - Misfits song Bullet
Taking Back Sunday - Breaking Pangaea song Sick Day(?)
Apologies, I Have None - Grade song Tension Between Stillness and Motion