9/11 Commission Executive Director Philip Zelikow is recused from some parts of the Commission’s investigation, specifically its examination of the Bush transition, on which he worked (see January 3, 2001), and interviews of senior Bush aides, including his associate, National Security Adviser Condoleezza Rice (see September 2003). This follows a complaint by victims’ relatives about Zelikow’s conflicts of interest (see October 3, 2003) and his interview by one of his own subordinates under oath (see October 8, 2003). Only Recused from Some Aspects - The subordinate, the Commission’s counsel Daniel Marcus, recommended that, due to the conflicts, Zelikow should be recused from the Commission’s work on the transition and anything to do with the National Security Council (NSC). This is what the families wanted and, in the words of author Philip Shenon, “would have effectively ended Zelikow’s involvement in the parts of the investigation that were most important to him.” Zelikow will later say this recusal proposal “would have had the prompt and foreseeable effect of forcing my resignation.” However, Commission Chairman Tom Kean and Vice Chairman Lee Hamilton water the proposal down, allowing Zelikow to continue to work on most aspects of the NSC investigation. Decision to Keep Zelikow Already Taken - According to Shenon, the decision to stick with Zelikow had been taken before Marcus interviewed him: “Kean and Hamilton made it clear to Marcus that they wanted to keep Zelikow on, regardless of what Marcus found. It was too late to find a new executive director. Besides, Zelikow had made himself indispensible, if only because he had so tightly controlled the flow of the information within the Commission that only he really knew all that was going on among the teams of investigators.” Marcus will say: “I think [Kean and Hamilton] basically made the decision that they were going to stick with this guy, that it was too late in the game to make a change.… [I]t was pretty clear that my instructions were to do what we needed to do on the recusal front and to make it work.” Lack of Appreciation of Zelikow's Importance - One reason behind the decision to keep Zelikow may be that Kean and, in particular, Hamilton do not fully appreciate how important Zelikow’s role is in shaping the Commission’s final output. Marcus will comment, “Lee had this view, which was somewhat unrealistic, that the staff was not important.” Shenon will add, “In Hamilton’s view, Marcus thought, Zelikow might be the most important person on the staff, but he was still a ‘staffer’ and was not capable of ‘sneaking something’ by the commissioners.” [Shenon, 2008, pp. 168-171]

Following the discovery that NORAD is withholding extremely important evidence from the 9/11 Commission (see Late October 2003), John Farmer, the leader of the Commission team investigating the day of 9/11, and the Commission’s Executive Director Philip Zelikow discuss subpoenaing the Pentagon. In the first meeting, Zelikow seems to support Farmer’s demand that a subpoena be issued, but is “hard to read” according to Farmer. Charges that Zelikow is 'Undoing' Subpoena - Farmer then returns to New York, where he is based for his work on the Commission. According to Farmer, he receives an urgent phone call from Daniel Marcus, the Commission’s counsel, telling him Zelikow is trying to derail the subpoena and that Defense Secretary Donald Rumsfeld is to meet with the commissioners to dissuade them. Such a meeting will actually be held one day before the Commission votes on the subpoena (see November 5, 2003). In Farmer’s account, Marcus says: “You’d better get down here. It’s all unraveling. Philip is undoing this.” Marcus will later say he does not recall this call, but will say that Zelikow, who was close to members of Rumsfeld’s staff, would even “flaunt” his good relations with Undersecretary of Defense for Intelligence Stephen Cambone. Zelikow will later make a successful last-ditch bid to prevent a subpoena being issued on the White House (see February 2004). Disagreement between Zelikow, Farmer - According to Farmer, he returns to Washington and together with Dana Hyde, one of his staffers, confronts Zelikow. Hyde complains, “We can’t do our job if you frustrate us.” Farmer adds: “I thought you were supporting this subpoena. Now I hear otherwise. What’s going on?” He demands he be allowed to address the commissioners on the subpoena, but Zelikow replies: “I represent the staff. I will represent your views.” According to author Philip Shenon, Zelikow’s face “turn[s] the crimson color that the staff in Washington ha[ve] seen before in moments of his most extreme rage.” Zelikow then says, “It’s beyond our pay grade at this point.” Farmer disagrees and storms out of Zelikow’s office. Zelikow's Version - Zelikow will confirm that there was a difference of opinion with Farmer on the matter: “We did have concerns about timing and tactics. Tension was building to a breaking point.” However, Zelikow will say he did not necessarily oppose a subpoena, as he shared Farmer’s concerns about the Pentagon’s truthfulness. Marcus will back Zelikow, saying that he thinks Zelikow did not try to derail the subpoena because of his friendship with Cambone or for any other reason. [Shenon, 2008, pp. 205-207]

The 9/11 Commission’s executive director, Philip Zelikow, has a comparison between Presidents George Bush and Bill Clinton that shows Bush in a bad light removed from the 9/11 Commission report. Clinton and Bush - The comparison was drafted by commission staffer Alexis Albion at the request of vice-chairman Lee Hamilton, a Democrat, and shows how Clinton and Bush addressed terrorism in general and al-Qaeda in particular in their public remarks. It is intended as a measure of how the two presidents had prioritized the issue, although there is the obvious problem that Clinton was in office for eight years, but Bush only eight months before the attacks. Albion found that Clinton addressed terrorism dozens of times, including in every State of the Union address and a speech to the UN General Assembly, and that he often warned about al-Qaeda and similar groups. By contrast, Bush rarely talked about terrorism, and when he did he focused on state-sponsored terrorism and missile defense against rogue states. Controversial - Albion and other members of her team are aware that the comparison will anger the Bush White House, in particular because other sections of the report will not be especially critical of the current administration. A statement that Bush spoke little about terrorism before 9/11 will probably be seen as the commission’s most direct personal criticism of him. However, they feel strongly that it should be in the report, as what the president says sets the agenda for the rest of the government and media. Zelikow's Reaction - Zelikow is angered by the comparison, almost yelling that it is “unreasonable” and “unfair,” as Bush “hadn’t been in office long enough to make a major address on terrorism.” Author Philip Shenon will describe Zelikow’s rage about this issue: “Zelikow’s anger was so off the scale on this issue that some of the staff members wondered if this was simply a show on his part to intimidate them into backing down.” Albion is supported by Daniel Marcus, the commission’s lawyer. According to Shenon: “[Marcus] thought it was one of Zelikow’s most overt displays of his partisanship, of his desire to protect the administration. Obviously it was significant if Bush, who was now claiming that he had been gravely worried throughout 2001 about terrorist threats, never bothered to mention it in public during that same period. ‘You’d think he would say something about it once in a while, right?’ asked Marcus.” However, Zelikow gets his way and the comparison is removed from the report. Endnotes - Despite this, Albion does manage to reinsert material from the comparison into the endnotes at the back of the commission’s final report. For example, endnote 2 to chapter 6 reads: “President Clinton spoke of terrorism in numerous public statements…. Clinton repeatedly linked terrorism groups and WMD as transnational threats for the new global era.” Endnote 164 to the same chapter reads: “Public references by candidate and then President Bush about terrorism before 9/11 tended to reflect… [his concern with] state-sponsored terrorism and WMD as a reason to mount a missile defense.” [Shenon, 2008, pp. 396-398]

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