STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:query proteins and first shell of interactors

white nodes:second shell of interactors

Node Content

empty nodes:proteins of unknown 3D structure

filled nodes:some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PBAL39_10990

Magnesium chelatase, subunit ChlI (393 aa)

Predicted Functional Partners:

PBAL39_11255

Magnesium chelatase, subunit ChlI (143 aa)

0.976

def

Polypeptide deformylase ; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (184 aa)

0.895

PBAL39_13642

Putative DNA processing Smf-like protein (365 aa)

0.885

PBAL39_09761

UPF0102 protein PBAL39_09761 (120 aa)

0.835

ffh

Fifty-four homolog ; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY (446 aa)

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1

node2

node1 accession

node2 accession

node1 annotation

node2 annotation

score

PBAL39_04908

PBAL39_09761

PBAL39_04908

PBAL39_09761

Putative amidophosphoribosyl-transferase

UPF0102 protein PBAL39_09761

0.651

PBAL39_04908

PBAL39_10990

PBAL39_04908

PBAL39_10990

Putative amidophosphoribosyl-transferase

Magnesium chelatase, subunit ChlI

0.783

PBAL39_04908

PBAL39_11255

PBAL39_04908

PBAL39_11255

Putative amidophosphoribosyl-transferase

Magnesium chelatase, subunit ChlI

0.781

PBAL39_04908

PBAL39_13642

PBAL39_04908

PBAL39_13642

Putative amidophosphoribosyl-transferase

Putative DNA processing Smf-like protein

0.783

PBAL39_04908

PBAL39_18204

PBAL39_04908

PBAL39_18204

Putative amidophosphoribosyl-transferase

Competence protein

0.740

PBAL39_09761

PBAL39_04908

PBAL39_09761

PBAL39_04908

UPF0102 protein PBAL39_09761

Putative amidophosphoribosyl-transferase

0.651

PBAL39_09761

PBAL39_10990

PBAL39_09761

PBAL39_10990

UPF0102 protein PBAL39_09761

Magnesium chelatase, subunit ChlI

0.835

PBAL39_09761

PBAL39_11255

PBAL39_09761

PBAL39_11255

UPF0102 protein PBAL39_09761

Magnesium chelatase, subunit ChlI

0.842

PBAL39_09761

PBAL39_13642

PBAL39_09761

PBAL39_13642

UPF0102 protein PBAL39_09761

Putative DNA processing Smf-like protein

0.611

PBAL39_10980

PBAL39_10990

PBAL39_10980

PBAL39_10990

Uncharacterized protein

Magnesium chelatase, subunit ChlI

0.503

PBAL39_10980

ffh

PBAL39_10980

PBAL39_10985

Uncharacterized protein

Fifty-four homolog ; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY

0.616

PBAL39_10990

PBAL39_04908

PBAL39_10990

PBAL39_04908

Magnesium chelatase, subunit ChlI

Putative amidophosphoribosyl-transferase

0.783

PBAL39_10990

PBAL39_09761

PBAL39_10990

PBAL39_09761

Magnesium chelatase, subunit ChlI

UPF0102 protein PBAL39_09761

0.835

PBAL39_10990

PBAL39_10980

PBAL39_10990

PBAL39_10980

Magnesium chelatase, subunit ChlI

Uncharacterized protein

0.503

PBAL39_10990

PBAL39_11255

PBAL39_10990

PBAL39_11255

Magnesium chelatase, subunit ChlI

Magnesium chelatase, subunit ChlI

0.976

PBAL39_10990

PBAL39_13642

PBAL39_10990

PBAL39_13642

Magnesium chelatase, subunit ChlI

Putative DNA processing Smf-like protein

0.885

PBAL39_10990

PBAL39_18204

PBAL39_10990

PBAL39_18204

Magnesium chelatase, subunit ChlI

Competence protein

0.669

PBAL39_10990

PBAL39_19854

PBAL39_10990

PBAL39_19854

Magnesium chelatase, subunit ChlI

Cytokinin riboside 5’-monophosphate phosphoribohydrolase

0.496

PBAL39_10990

PBAL39_25040

PBAL39_10990

PBAL39_25040

Magnesium chelatase, subunit ChlI

Cytokinin riboside 5’-monophosphate phosphoribohydrolase

0.496

PBAL39_10990

def

PBAL39_10990

PBAL39_11357

Magnesium chelatase, subunit ChlI

Polypeptide deformylase ; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions

0.895

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Network Stats

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Functional enrichments in your networkNote: some enrichments may be expected here (why?)

Enrichment analysis is still ongoing, please wait ...

Statistical background

For the above enrichment analysis, the following statistical background is assumed: