Well I did what you said Nikon23 and it did help fix the ship. So I thank you for that. Unfortunately it's not completely fixed. The only party members that are spawning in the ship are Atton, Kreia, Handmaiden, and T3. This leaves out Mira, Visas, Bao-dur, and Goto whom are all in my party. If you know a solution to this as well I would be very greatful. If not then I suppose I'll just start a new game since I have no save games before Nar Shaddaa. Thanks in advance!

[B]Edit:[B]

So I fixed my problem. I was missing a file that I accidentally moved. Thanks for all the help guys.