Hi Joel,
This is possible using BioPerl, but it may be simpler to use an online
automated annotation service eg:
http://www.xbase.ac.uk/annotation
Roy.
On 24/01/2012 13:38, Bradyjoel wrote:
>> Hi all,
>> I'm somewhat new to the bioinformatics but I need to annotate a newly
> sequenced bacterial genome based on some known proteins amino acid sequences
> from a neighbouring organism. I've been doing this manually with tblastn and
> then search and annotated this in artemis. However I have an entire
> directory full of these protein sequences and was wondering if this could be
> automated in such way that I have an input nucleotide sequence consisting of
> contigs which are automatically translated in frames and then aligned and
> annotated with the known protein amino acid sequences. If you could help me
> with writing such a script I would be very grateful.
>> Joel
>>>