Glossary

We’ve prepared a Glossary for the course that contains a list of the key terms relating to antimicrobial stewardship used throughout the course. You can also download this as a PDF from the download link at the bottom of this page as well as a list of acronyms.

A

Acute otitis media (AOM)

Agar

Aminoglycosides

A class of antibiotics, principally active against
Gram-negative bacteria.

AMR

Antimicrobial Resistance

Antibiogram

The result of laboratory testing for the sensitivity of an
isolated bacterial strain to different antibiotics. Antibiograms can be
collated to form cumulative antibiograms, which can help to form
prescribing guidelines at a hospital, regional or national level.

Antibiotic

A chemical substance –strictly one produced by a
microorganism that kills or inhibits the growth of bacteria at very low
concentrations. The term is frequently used interchangeably with
antibacterial and antimicrobial.

Antibiotic susceptibility testing (AST)

Generic term for the laboratory measurement, achievable using different methods, of the levels of susceptibility or resistance shown by bacterial isolates to antibiotics. It may, for example, involve disc diffusion testing or MIC
determination.

Antimicrobial

A chemical substance that kills or inhibits the growth of microorganisms such as bacteria, viruses or fungi. (See also:
antibiotic, which is a class of antimicrobials).

Area under the curve (AUC)

The area under the curve (mathematically known as definite integral) in a plot of concentration of drug in blood plasma against time (Wikipedia).

AUC/MIC

A PK/PD index that divides the area under the concentration–time curve over 24 h by the MIC.

B

Bacteraemia

Bacteriology

Bacterial isolate

The separation of mixed bacterial strains in to single strains for identification.

Beta-lactamase

A family of enzymes produced by bacteria that destroy beta-lactam antibiotics.

Biomarker

Tests that can be used to follow body processes and diseases in humans and animals. They can be used to predict how a patient will respond to a medicine or whether they have, or are likely to develop, a certain disease.

Blood culture

Is a microbiological culture of blood, which usually is a sterile environment. It is employed to detect infections that are spreading through the bloodstream, mainly in patients with sepsis.

Bloodstream infection

The presence of live pathogens in the blood, causing an infection. (See also: pathogen, infection).

Breakpoints

Agreed threshold criteria used to interpret MICs or disc diffusion zone sizes to define whether a bacterial isolate is susceptible or resistant to a particular antibiotic and aid clinical decisions the likely outcomes of treatment.

Broad-spectrum antimicrobials

Antimicrobials that have activity against several microorganisms harboring different mechanisms of resistance. These antimicrobials should preferably be used empirically in the setting of patients with severe infections or when antimicrobial resistance is present.

C

Cmax

C-reactive protein (CRP)

CRP is an acute phase protein of hepatic origin that is used as biomarker of infection.

Care bundle

A set of evidence-based practices that have been shown to improve outcomes when performed collectively and consistently. The concept was developed by the Institute for Healthcare Improvement in the United States to improve the care process and patient outcomes.

Catheter

A thin, flexible, hollow tube used to add or remove fluids from the body.

Cell wall

The outer coat of a bacterial cell.

Chromosomal DNA

DNA contained within the chromosome – the DNA responsible for the reproduction of the organism.

Clostridium difficile

A Gram-positive bacterium responsible for what can be a severe form of antibiotic-associated diarrhoea.

Coagulase negative staphylococci

Members of the Gram-positive genus Staphylococcus that do not produce the enzyme coagulase. Generally they are less pathogenic than Staphylococcus aureus but can cause serious infections, particularly in the presence of foreign or prosthetic materials.

Co-amoxiclav

An antibiotic containing and combination of amoxicillin, a beta-lactam antibiotic, and clavulanic acid, an inhibitor of the enzyme beta-lactamase.

Colonisation

A process in which an organism (such as a bacterium) grows inside someone without causing illness.

Computer decision support systems (CDSS)

Computer applications designed to aid clinicians in making diagnostic and therapeutic decisions in patient care.

Computerised physician order entry (CPOE)

Any system in which clinicians directly enter medication orders (and, increasingly, tests and procedures) into a computer system, which then transmits the order directly to the pharmacy. These systems have become increasingly common in the inpatient setting as a strategy to reduce medication errors. A CPOE system, at a minimum, ensures standardized, legible, and complete orders and thus has the potential to greatly reduce errors at the ordering and transcribing stages. CPOE are usually paired with CDSS.

Concentration dependent antibiotics

Those antibiotics whose killing response is dependent on the maximum concentration achieved at the site of infection.

Control

A standard against which other conditions can be compared in a scientific experiment. For example, if an experiment tested the effects of a new antimicrobial, the results might be compared against a control group of people given standard antimicrobials.

Co-trimoxazole

An antibiotic containing sulfamethoxazole and trimethoprim.

CPE

Carbapenemase-producing Enterobacteriaceae

CPO

CPO refers to bacteria such as Klebsiella, Escherichia coli (E. coli), Acinetobacter, and
Pseudomonas, that are found in normal human intestines. In some parts of the world this group
of bacteria have acquired genes that make them resistant to a broad spectrum type of
antibiotics including those known as carbapenem antibiotics.

D

Data

Data are the information collected through research or audit. They can include written information, numbers, sounds and pictures.

Deoxyribonucleic acid (DNA)

A complex molecule that serves as the genetic material responsible for heredity, the transfer of characteristics to subsequent generations. It is fundamental to and critical for most life on Earth (exceptions would include some viruses).

Defined daily dose (DDD)

The DDD is the assumed average maintenance dose per day for a drug used for its main indication in adults.

Disc diffusion

A laboratory method widely used to measure of the activity of a specific antibiotic against a particular bacterial isolate. It is used together with breakpoint to determine whether the bacterial isolate is susceptible or resistant to that antibiotic.

Disease Surveillance

Surveillance is an epidemiological practice by which the spread of disease is monitored in order to establish patterns of progression. The main role of disease surveillance is to predict, observe and minimise the harm caused by outbreak, epidemic and pandemic situations, as well as increase our knowledge as to what factors might contribute to such circumstances.

DNA:

Deoxyribonucleic acid is the molecule that carries the genetic instructions for the functioning and reproduction of all living organisms.

E

ESBL

Extended-spectrum beta-lactamases are enzymes that confer resistance to most beta-lactam antibiotics, including penicillins, cephalosporins, and the monobactam aztreonam.

Enterobacteriaceae

A large family of Gram-negative bacteria that are intrinsically the common cause of infections in humans.

Enterococci

A Gram-positive species that are intrinsically resistant to many groups of antibiotics.

Escherichia coli (E. coli)

A Gram negative bacterial species responsible for many different types of infections in humans

Eukaryotes

Cells with a membrane-bound nucleus – more advanced than bacteria.

Epidemiology

The study of factors that have an impact on disease in the human community. Often used in the control of health problems. Healthcare associated infection (HAI): Infections acquired as a direct or indirect result of health care.

Gonorrhoea

Gram-negative

Bacteria with only a thin peptidoglycan layer in their cell wall, rendering them unable to retain the crystal violet stain used in laboratories.

Gram-positive

Bacteria with a thick peptidoglycan layer in their cell wall, which can retain the crystal violet stain used in laboratories.

Gram staining

Also known as Gram ́s method, is a method of differentiating bacterial species into two large groups (gram-positive and gram-negative). The name comes from the Danish bacteriologist Hans Christian Gram, who developed the technique. Gram staining differentiates bacteria by the chemical and physical properties of their cell walls by detecting peptidoglycan, which is present in a thick layer in gram-positive bacteria. In a Gram stain test, gram- positive bacteria retain the crystal violet dye, while a counterstain (commonly safranin or fuchsine) added after the crystal violet gives all Gram-negative bacteria a red or pink colouring.

Haematological malignancies

I

ID

Immuno-compromised

Having an immune system that has been impaired by disease or treatment.

Immune response

Part of the body’s protective mechanism against infection.

Infection

The invasion and reproduction of pathogenic (disease- causing) organisms inside the body. This can cause tissue injury and progress to disease.

Infection control or infection control measures

Measures that aim to prevent the spread of pathogens between people in a healthcare setting. Examples of infection control measures include hand washing, protective clothing, isolation procedures and audits of compliance with hygiene measures.

Inflammatory response

The body’s reaction to many infections, mediated by the immune system.

Isoniazid

An antibiotic used to treat tuberculosis.

Inpatient

A patient who visits a healthcare facility for diagnosis or treatment and stays in the hospital for at least one night.

Intravenous

Within or into a vein for example an intravenous catheter would be a catheter that is inserted into a vein.

In vitro

An event-taking place in a test tube, culture dish, or elsewhere outside a living organism.

K

Klebsiella pneumoniae

L

Lipopeptides

M

MALDI-TOF MS

Stands for Matrix Assisted Laser Desorption/Ionization Time of Flight Mass Spectrometry. It is a soft ionization technique used in mass spectrometry, allowing the analysis of biomolecules (biopolymers such as DNA, proteins, peptides and sugars) and large organic molecules (such as polymers and other macromolecules), which tend to be fragile and fragment when ionized by more conventional ionization methods. It is used in Microbiology for the identification of microorganisms (bacteria and fungi).

MBCA

Minimum bactericidal concentration: the lowest concentration of antibiotic that kills a bacterial strain.

MDT

Multidisciplinary Team

Methicillin

An antibiotic, no longer used, that was developed to treat beta-lactamase-producing strains of S. aureus.

MIC (Minimum Inhibitory Concentration)

A numerical measure (expressed as mg/L or ug/ml) of the activity of a specific antibiotic against a particular bacterial isolate. It is determined in the laboratory and used together with breakpoints to decide whether the bacterial isolate is susceptible or resistant to that antibiotic.

Model for Improvement

Developed by Associated in Process Improvement from the work of Clarence Lewis, Walter Shewhart and W Edwards Demming. The Model for Improvement combines Plan Do Study Act cycles with three questions: What are we trying to accomplish? How will we know that change is an improvement? What changes can we make that will result in an improvement? The Model for Improvement was adopted by the Inistitute for Healthcare Improvement (IHI) over 40 years ago.

Molecular epidemiology

The laboratory characterisation of bacteria and the genetic elements responsible for any resistance to antibiotics. Can be used to investigate transmission of bacteria or resistance in healthcare settings

Morbidity

The state of being ill, diseased or injured. (‘Morbidity rate’ describes the occurrence of a disease or condition that causes morbidity).

Mortality

Death, or the frequency or number of deaths. For example: infections are a major cause of mortality worldwide, and the mortality rate of [this type of] infection is 30%.

MRSA

Meticillin resistant Staphylococcus aureus; strains of S. aureus that are resistant to methicillin, and therefore also resistant to almost all other beta-lactam antibiotics.

Mutant

An organism with a different genetic character due to a change in its DNA.

Mutation

A change in the genetic code of an organism.

MTB

N

Nosocomial infection

O

Occupied bed-days (OBDs)

Total number of bed-days of all admitted patients accommodated during the reporting period, taken from a count of the number of inpatients at about midnight each day. Details for patients being admitted and leaving on the same day are also recorded as OBDs, counting one OBD for each same-day patient. In the United States, OBDs are referred to as ‘patient days’.

Outbreak

A classification used in epidemiology to describe a small, localised group of people infected with a disease.

Outpatient

A patient who visits a healthcare facility for diagnosis or treatment without spending the night. Sometimes called a day patient, day-stay patient or day-only patient.

P

Parenteral

Getting a drug or substance into the body by injection.

Pathogen

A disease-causing agent. The term is often used to refer to infectious microorganisms, such as bacteria, viruses or fungi.

PCR

It stands for Polymerase-chain reaction. It is a technology in molecular biology used to amplify a single copy or a few copies of a piece of DNA across several orders of magnitude, generating thousands to millions of copies of a particular DNA sequence. It is used in Microbiology to identify the presence of bacterial, fungal or viral DNA or RNA in clinical samples.

Petri dish

A shallow cylindrical glass or plastic lidded dish that microbiologists use to culture microorganisms.

Pharmacodynamics (PD)

Is the study of the biochemical and physiological effects of drugs on the body or on microorganisms or parasites within or on the body and the mechanisms of drug action.

Pharmacokinetics (PK)

The characteristic interactions of a drug and the body in terms of its absorption, distribution, metabolism, and excretion” (Merriam-Webster).

PK/PD

Relationship between drug concentration and effect.

PDSA

Plan Do Study Act is a format for structuring and reporting the results of tests of change. Multiple, small tests of change are reported as PDSA cycles. PDSA cycles are part of the Model for Improvement.

Plasmids

Circular pieces of DNA, highly variable in size and properties, which may carry the genetic instructions to make bacteria resistant to antibiotics. Plasmids may be transferred between bacteria, so aiding the spread of resistance.

Point prevalence survey (PPS)

A prevalence survey is a count of the number of patients with a particular condition/treatment at a particular time.

Procalcitonin

A precursor of the hormone calcitonin has been proposed as a biomarker for bacterial infections

Prophylactic:

Medications or treatments that are preventive in the treatment of disease. For example, antimicrobials are sometimes given prophylactically before surgery to prevent infection.

Q

Quality improvement

Quinolones

R

Resistance

A property of some bacteria which renders certain antibiotics ineffective against them in the laboratory or when they are used to treat infections. Resistance may be an intrinsic characteristic, or may be acquired and selected by exposure to antibiotics. The latter category frequently has greater public health significance.

Rifampicin

A broad-spectrum antibiotic principally used to treat tuberculosis.

Risk factor

An activity or factor that may increase the chance of developing a disease. For example, smoking is a risk factor for lung cancer.

Toxicity

Toxins

U

Urinary tract infection

Infection of the bladder, ureters or kidneys.

Urine culture

A urine culture is a test to find and identify germs (usually bacteria) that may be causing a urinary tract infection (UTI). In order to avoid culture contaminations, urine collection process must be carefully followed.