Citations in PubMed

PDB ID Mentions in PubMed Central
Article count: 28

Citations in PubMed

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PDB ID Mentions in PubMed Central

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In silico models were built with Swiss-model repository software (Swiss Institute of Bioinformatics & the Biozentrum, University of Basel, Switzerland) based on an X-ray diffraction of a human... IgG1 (1HZH, Protein Data Bank).

Publication Year: 2011

Interaction between prion protein and toxic amyloid ? assemblies can be therapeutically targeted at multiple sites.

The main regions of change are represented on a crystal structure of the IgG1 Fc (PDB 1hzh; Fig.

No further significant increase in deuterium content was observed after 24 h. ( B ) Peptides with a significant change in % HDX (defined as at least 2 time points showing a difference in deuterium uptake > 5%; average standard deviation of measurements is < 2.5%) are displayed on the crystal structure of an IgG1 Fc (PDB 1hzh).

The full-length antibody trajectories were further broken down into two trajectories starting from a homology model based on 1HZH, two starting from homology models based on 1IGY, eight trajectories (... 1HZH based and 4 1IGY based) using structures taken from the ANM calculations (i.e., configurations along the modes calculated using ANM) and six trajectories in 150 mM sodium chloride.

The templates for the homology model were the human IgG1 (1HZH) 17 and murine IgG1 (1IGY) protein crystal structures.

The differences are not significant except for the F ab 1–F ab 2 inter-domain salt bridges from the simulations with starting models built from 1HZH template.

32 The F c structure was generated by removing the F ab domains from the full-length human IgG1 crystal structure (PDB ID 1HZH) up to the upper hinge lysine residue (F c structure generated this way contained the entire intact F c domain and all of middle and lower hinge).

First, the IgG1-Fc and the hinge regions of 1HZH were structurally aligned to 1OQO.

Two additional systems of 1OQO were prepared with the hinge region from the full-size human IgG1 crystal structure with PDB ID 1HZH [ 40 ] modeled in, again at protonation states corresponding to pH ≈ 4 (referred to as H4) and pH ≈ 7 (referred to as H7).

Publication Year: 2014

Immunoglobulin and T Cell Receptor Genes: IMGT(®) and the Birth and Rise of Immunoinformatics.

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