Stenton was a professor of history at the University of Reading (1926-1946), and subsequently the university's vice-chancellor (1946-1950). During Stenton's period as vice-chancellor at Reading, he presided over the university's purchase of Whiteknights Park, creating the new campus that allowed for the expansion of the university in later decades. In November 2008, it was announced that a new hall of residence to be constructed on that campus would be named Stenton Hall, in his honour.[2]

His wife, Doris Mary Stenton, wrote a preface to the third edition of Anglo-Saxon England, published after his death, and edited Preparatory to Anglo-Saxon England Being the Collected Papers of Frank Merry Stenton, published in 1970. She was an historian in her own right, producing English Society in the Early Middle Ages for the Pelican History of England.