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GAEVAL analysis of transcript annotations

What is GAEVAL? GAEVAL displays incongruencies in gene models, based on splice-aligned transcript evidence overlapping with a locus. GAEVAL data is categorized by the type of incongruency, for example alternative splicing. GAEVAL provides a good jumping-off place for gene annotation!

Quick Start: Click one of the categories listed in red below under "MOST WANTED! Annotations", to view a list of models flagged for that type. The data columns and evidence flags allow you to quickly assess the status of each gene model. Then click the URL "globe" link to view the gene model and its transcript alignments in a genome browser window. Now you can use the yrGATE tool to annotate the locus.

For more information: Go to the GAEVAL section of Annotation Help. For help annotating genes with yrGATE, visit yrGATE section of Annotation Help.

BEST OF SHOW! Annotations: This window displays gene models previously annotated by other yrGATE users, organized by category.

Annotation Filters: These checkboxes allow you to customize the display of gene models according to the criteria you set. After setting parameters as desired, click "Retrieve Annotations" at the top of the page to view your filtered list

Need more help? Visit Help & Tutorials overview page for a list of help resources. Questions, comments? Please use our Feedback form.

from annotation source
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Display Options

Annotation

WWW links

Standard Integrity

Custom Integrity

Introns Confirmed

Intons Unsupported

%Coverage

5`UTR Size

CDS Size

3`UTR Size

Upstream Boundary Extension

Downstream Boundary Extension

Alternative Splicing / Structure

Alternative Transcript Termination

Annotation Fission / Spliting

Annotation Fusion / Merger

Erroneous Annotation Overlap

The order of the above items determine their display order (left to right) in the results table

Fields with an 'X (NO SORT)' will NOT be used to sort results

Numbers in the drop down menu determine the sort order of the displayed results

Un-checked fields will not be displayed as columns in the results table