RegulomeDB has been updated to Version 1.1. This includes bringing our database up-to-date with current ENCODE releases:
Xie et al. (2013) and Boyle et al. (2014). We have also added Chromatin States from the Roadmap Epigenome Consortium (unpublished) as well as updates to DNase footprinting, PWMs, and DNA Methylation.

Enter dbSNP ID(s) (example) or
upload a list of dbSNP IDs to identify DNA features and regulatory elements that contain
the coordinate of the SNP(s).

Enter hg19 coordinates for a single nucleotide as 0-based (example) coordinates or in a
BED file (example), VCF file (example),
or GFF3 file (example).
These coordinates will be mapped to a dbSNP IDs (if available) in addition to
identifying DNA features and regulatory elements that contain the input coordinate(s).

Enter hg19 chromosomal regions, such as a promoter region upstream of a gene, as 0-based (example) coordinates or in a
BED file (example) or GFF3 file (example).
All dbSNP IDs with an allele frequency >1% that are found in this region will be used to identify DNA features and regulatory elements that contain the coordinate of the SNP(s).

A project of the Center for Genomics and Personalized Medicine at Stanford University.