Research News

Correction of a Faulty Gene in Human Embryos

- Published in Nature, CRISPR-Cas9 genetic scissors open up new pathways to treat and prevent genetic diseases -

The news at a glance

A new paper in Nature reports the correction of a disease-causing mutation in human embryos. The study is the result of an international collaboration of research centers: the Center for Genome Engineering, within the Institute for Basic Science (IBS, South Korea), Oregon Health and Science University (OHSU, USA), Salk Institute for Biological Studies (USA), BGI-Qingdao and Shenzhen Engineering Laboratory for Innovative Molecular Diagnostics (China).

The scientists used the groundbreaking gene-editing tool CRISPR-Cas9 to repair the DNA piece that causes a common genetic heart disease known as hypertrophic cardiomyopathy. This technique would prevent the disease from being inherited by succeeding generations.

The experiments on the embryos were conducted in the US following all ethical guidelines. IBS researchers provided CRISPR-Cas9 and analyzed the DNA of the embryos to make sure that the procedure worked correctly.

CRISPR-Cas9 combined with in vitro fertilization (IVF) and preimplantation genetic diagnosis (PGD) could be helpful for many other genetic diseases. However, the scientists stated that "genome editing approaches must be further optimized" before moving to clinical trials.

"We have succeeded in correcting the mutated gene which causes hypertrophic cardiomyopathy in human embryos with high efficiency and specificity," stresses Jin-Soo KIM, Director of the Center for Genome Engineering, within the Institute for Basic Science (IBS). "Research on human embryos has been a very sensitive subject. The application of this technology to clinical practice in the future requires not only additional research, but also social consensus."

Hypertrophic cardiomyopathy: A genetic disease that kills athletes

Hypertrophic cardiomyopathy is one of more than 10,000 inheritable diseases caused by an error in a single gene. This genetic disease manifests only in adulthood and affects an estimated 1 in 500 people. It can lead to heart failure and sudden death of apparently healthy people. It is well known by sports doctors because training worsens the condition in athletes who suffer from this disease. It is an autosomal dominant genetic disease, meaning that patients with a single copy of the mutant gene are affected and have a 50% chance of transmitting it to their offspring. Current treatments rely mainly on symptomatic relief.

Forty percent of all familial hypertrophic cardiomyopathy is caused by a mutation of the MYBPC3 gene on the 11th chromosome. In this study, the researchers dealt with a mutation characterized by four missing base pairs in the MYBPC3 gene. Reintroducing these four base pairs with CRISPR-Cas9 in the embryo prevents this mutation from appearing in future generations

CRISPR-Cas9: Increasing the rate of healthy embryos

The experiment on human embryos was conducted by the OHSU research team in the United States. Researchers worked with healthy egg cells, donated by women, and sperm of a man affected by hypertrophic cardiomyopathy.

The IBS team provided CRISPR-Cas9, a genetic tool that has already been shown to eliminate, add or replace pieces of DNA in specific genes. In this case, it allowed the correction of the hypertrophic cardiomyopathy mutation carried in the DNA of the sperm. CRISPR-Cas9 works as a pair of genetic scissors designed to cut the DNA near the position of the mutation. Then, the cut is spontaneously repaired by the cell with different mechanisms: one repairs the DNA without leaving any trace, while the other introduces some unwanted insertions or deletions of a few base pairs near the cutting site.

Videos of the experiment are available on IBS YouTube channel.
▲ Video 1: Simplified representation of CRISPR-Cas9 in action. The "gene scissors" Cas9 (green, programmable nucleases) are designed to create cuts on the target DNA (blue) in a precise location indicated by the guide RNA (purple). In this study, the target of the CRISPR system is a mutation causing hypertrophic cardiomyopathy characterized by the lack of some nucleotides in the MYBPC3 gene of the sperm DNA. The mutation is then corrected by the cell by adding the missing nucleotides. (Credits: Institute for Basic Science, IBS)

Previous studies have injected CRISPR-Cas9 after IVF, but faced mosaicism problems, characterized by embryos having a mixture of cells with and without the repaired mutation. Mosaicism would lead to organisms with some tissues or organs that bear the mutations and some that do not. In this study, the researchers injected sperm and CRISPR-Cas9 into the egg at the same time to improve the accuracy of the gene correction. Thanks to this strategy, mosaicism did not occur.

CRISPR-Cas9 cut the DNA at the correct position in all tested embryos (100%) and 42 out of the 58 embryos (72.4%) did not carry the hypertrophic cardiomyopathy mutation. In other words, this technique increased the probability of inheriting the healthy gene from 50% to 72.4%. Moreover, while doing this research the scientists also discovered that human embryos have an alternative DNA repair system, where the Cas9-induced cuts in the DNA coming from the sperm are repaired using the healthy egg's DNA as a template. In the remaining 27.6% embryos, the cellular cut-repairing mechanism introduced some unwanted insertions or deletions near the cut.

Having confirmed that the disease-causing mutation is repaired correctly in human embryos, IBS researchers performed further analysis to make sure that the gene scissors did not cut any other sites of the human genome. The IBS team has previously developed a technique known as Digenome-seq to assess the accuracy of the gene scissors, as off-target cuts and editing mistakes could be a major problem and bring unwanted consequences. Sequencing the whole genome of the embryo did not find any off-target changes. The result was also confirmed with another DNA sequencing technique by researchers working at BGI-Qingdao and Shenzhen Engineering Laboratory for Innovative Molecular Diagnostics.

▲ Figure 2: The technique at a glance: Eggs from healthy donors and sperm from a man affected by familial hypertrophic cardiomyopathy are fertilized in vitro. (A) Previously, CRISPR/Cas9 (scissors) was injected into the egg after in vitro fertilization and could have acted after duplication of the DNA had already begun, running the risk of creating mosaic embryos, a mismatched situation where some cells are still mutated while other cells have been repaired. (B) The new technique injects CRISPR/Cas9 and the sperm at the same time, avoiding mosaicism problems. (Modified from Ma H. et al., Nature 2017)

The ethics of using CRISPR's research on human embryos

The embryo studies were conducted in the USA where this procedure is legal, in adherence to guidelines established by OHSU's Institutional Review Board and additional ad-hoc committees established for scientific and ethical review. The work is also consistent with recommendations issued in February 2017 by the National Academy of Sciences and the National Academy of Medicine joint panel on human genome editing (http://nationalacademies.org/gene-editing/consensus-study/index.htm).

Funding for this study

Jin-Soo Kim's lab at Seoul National University is supported by the Institute for Basic Science (IBS). Studies conducted at OHSU were supported by OHSU institutional funds, including the Knight Cardiovascular Institute. Work in the laboratory of co-author Juan Carlos Izpisua Belmonte of the Salk Institute was supported by the G. Harold and Leila Y. Mathers Charitable Foundation, the Moxie Foundation, and The Leona M. and Harry B. Helmsley Charitable Trust. Work at BGI was supported by the Shenzhen Municipal Government.

- About the Institute for Basic Science (IBS)
IBS was founded in 2011 by the government of the Republic of Korea with the sole purpose of driving forward the development of basic science in South Korea. IBS has launched 28 research centers as of January 2017. There are nine physics, one mathematics, six chemistry, eight life science, one earth science and three interdisciplinary research centers.