If we need to, we can upload a Komodo Bioperl template. I have a
very old one that I passed on to Mauricio. We could clean it up and
add it to the core distribution or elsewhere if needed.
Chris
On Sep 20, 2006, at 3:58 PM, Sendu Bala wrote:
> Mauricio Herrera Cuadra wrote:
>> Chris Fields wrote:
>>> Dave,
>>> There is a small bit about what to have in POD in biodesign.pod,
>>> which
>>> is no longer in the core. I think most of it can be found in the
>>> wiki under
>>> 'Advanced BioPerl'.
>>>http://www.bioperl.org/wiki/Advanced_BioPerl>>>>>> There is a link to the older version of it:
>>>>>>http://bioperl.org/Core/Latest/biodesign.html>>>> Supposedly, this is all what people may need to get started by
>> using a
>> consistent design.
>> There's also the Bioperl-independent need simply to write valid
> POD, and
> preferably POD that can be understood by all/many parsers. I used
> maintenance/pod.pl earlier today which shows you all the POD problems.
> The remaining warnings are 'ok'.
>>>>> There is also an Emacs template, which I haven't toyed around
>>> with. I
>>> use ActiveState Komodo, which runs on Mac OS X and WinXP. Yes, I am
>>> pathetic...
>>>> Komodo is a great IDE (I use it daily)
>> Agree, and likewise.
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign