Identify and plot CpG islands in nucleotide sequence(s)Input parameters for the toolSequence [One or more sequences to be analysed can be entered directly into this form.
Sequences can be be in GCG, FASTA, EMBL, GenBank, PIR, NBRF, PHYLIP or UniProtKB/Swiss-Prot format.
Partially formatted sequences are not accepted.
]Window size [
The percentage CG content and the Observed frequency of CG
is calculated within a window whose size is set by this parameter.
The window is moved down the sequence and these statistics are
calculated at each position that the window is moved to
]Minimum length of an island [
This sets the minimum length that a CpG island has to be
before it is reported.
]Minimum observed/expected [
This sets the minimum average observed to expected ratio of
C plus G to CpG in a set of 10 windows that are required before a
CpG island is reported.
]Minimum percentage [
This sets the minimum average percentage of G plus C a set
of 10 windows that are required before a CpG island is reported.
]List of renderers available to output the result of the jobDetails about a renderer used to output the result of the jobA short description of the rendererA suggested file suffix to be used when saving the data formatted by the rendererThe renderer identifier to be used when invoking the getResult() methodA more appropriate name for the renderer (more meaningful than the identifier)The media type (MIME) of the renderer's outputA set of parameters passed to a renderer when formatting the dataA parameter used by the rendererThe name of the parameterThe parameter value as an array of StringList the names of the tool parametersDetails about a tool parameterThe name of the parameterA short description of the parameterThe type of the parameterThe list of values available for this parameterThe list of parameter valuesThe details about a parameter valuesA meaningful label for the parameter valueThe real valueA flag indicating whether this value is a default value or notA set of additional properties associated with the parameter valueA set of propertiesA key/value pair association of informationUser email addressA title to identify the analysis jobThe list of parameters to be used for launching the analysisA unique identifier for the analysis jobAn identifier for the job to checkThe status of the job (FINISHED, ERROR, RUNNING, NOT_FOUND or FAILURE)An identifier for the job to checkThe list of renderers availableAn identifier for the job to checkThe renderer to be used to format the outputA list of parameters to be passed on to the rendererBase64 encoded data corresponding to the output of the job formatted by the rendererThe identifier for the parameterThe parameter detailsThe list of parameters available for this toolSubmit an analysis jobGet the status of a submitted jobGet the list of renderers available to output a job result (i.e. the list of available output types)Get a job result formatted using a particular rendererList the names of the parameters available before submissionGet some details about a parameter (e.g. name, description, values, etc.)Submit an analysis job

Get the status of a submitted job

Get the list of renderers available to output a job result (i.e. the list of available output types)

Get a job result formatted using a particular renderer

List the names of the parameters available before submission

Get some details about a parameter (e.g. name, description, values, etc.)