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NAMD

NAMD
(NAnoscale Molecular Dynamics) is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. It has been developed by the Theoretical and Computational Biophysics Group (TCB) at the University of Illinois at Urbana-Champaign. NAMD uses the molecular graphics program VMD for simulation setup and trajectory analysis, and is also file-compatible with AMBER, CHARMM, and X-PLOR.