Vitis vinifera vs Prunus persica LastZ Results

Vitis vinifera (Vitis vinifera, 12X) and Prunus persica (Prunus persica, Prunus_persica_NCBIv2) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release . Vitis vinifera was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 203,095

Genome coverage (bp)

Coding exon coverage (bp)

Vitis vinifera

Uncovered: 421,423,085 out of 486,265,422Covered: 64,842,337 out of 486,265,422

Uncovered: 3,562,734 out of 32,794,161Matches: 21,321,593 out of 32,794,161Mismatches: 7,413,599 out of 32,794,161Insertions: 496,235 out of 32,794,161

Prunus persica

Uncovered: 171,058,246 out of 227,411,381Covered: 56,353,135 out of 227,411,381

Uncovered: 3,927,321 out of 33,236,255Matches: 21,161,000 out of 33,236,255Mismatches: 7,514,872 out of 33,236,255Insertions: 633,062 out of 33,236,255