Theme Developer

Well when deodexing, it has alot of .odex dependencies, so pull all .odex's from /framework and put them in the same folder in baksmali and run the script. E.X.- java -jar baksmali.jar -x systemui.odex. Then use smali to get your classes.dex file then put them in the archive of your .apk or .jar you are deodexing, then you are deodexed I think ;p
Alternatively, you could extracted the classes.dex from the new ics leak cm9 build and put them in the archive of the file you are deodexing.

Well when deodexing, it has alot of .odex dependencies, so pull all .odex's from /framework and put them in the same folder in baksmali and run the script. E.X.- java -jar baksmali.jar -x systemui.odex. Then use smali to get your classes.dex file then put them in the archive of your .apk or .jar you are deodexing, then you are deodexed I think ;p
Alternatively, you could extracted the classes.dex from the new ics leak cm9 build and put them in the archive of the file you are deodexing.