Dear BioC,
Here is my R script code which is running on server in background.
##################################
chiptype <- annotation(affy_batch_object);
if(chiptype == "hu6800")
{
library(hu6800cdf);
library(hu6800probe);
library(hu6800);
library(humanCHRLOC);
library(humanLLMappings);
envGeneNames <- hu6800GENENAME; # very important
envPath2Probes <- hu6800PATH2PROBE;
envGO2AllPROBES <- hu6800GO2ALLPROBES;
envGENEIDS <- hu6800ENTREZID; # very important
}
and so on for commonly used AFFY Chips....
##################################
I have written this manually, how can I load annotations and packageENGREZID, packageGENENAME..etc. dynamically?
I am currently working with Affy chips but I also like to work on Agilent chips in futureI.
OR
I just write a perl/php scripts which prints above information...thats my thinking.
Thank you so much in advance,
Saurin
|------------------------------------------------
| Saurin D. Jani
| Bioinformatician
|| Department of Cell Biology and Anatomy
| Medical University of South Carolina (MUSC)
| 173 Ashley Ave
| Charleston,SC - 29425
|| Email: jani at musc.edu| Phone: (843)792-1340
| Website: http://www.musc.edu/~jani|------------------------------------------------