> I added an ant taks called processTemplates (a fork="true" in the java task
> solved the problem). This writes template images directly to src, so running
> that should do everything needed.
Thanks, it works fine! But it depends on local JCP settings (when I ran it first time, it produced b/w images because colors were turned off in ~/.jchempaint/properties)
Also, I think that image quality is quite bad, artifacts are visible near structures
--
Regards,
Konstantin

> how is ChEBI linking JChemPaint to the ChEBI database substructure
> searching?
Export of structure in mol format to a text field via JavaScript, submission
of the form via http and execution of search on server using the mol file. I
think this is the only way you can do it in a webapp, since the applet is
running on client and the database on the server, so a direct link seems not
possible for me.
Stefan
>
> Egon
--
Stefan Kuhn B. Sc. M. A.
Software Engineer in the Chemoinformatics and Metabolism Team
European Bioinformatics Institute (EBI)
Wellcome Trust Genome Campus
Hinxton, Cambridge CB10 1SD UK
Phone +44 1223 49 2657
Fax +44 (0)1223 494 468

On Tue, Jan 26, 2010 at 9:56 PM, Konstantin Tokarev <annulen@...> wrote:
> I'd like to setup local database containing reagents used in our laboratory and use JCP for substructure search. Is there any working solution for interaction of JCP with database? What 3rd party software is needed?
Are you using MyChem of PgChem, perhaps?
I can imagine someone should write a JavaScript (perhaps using
jQuery?) library that links JChemPaint to ChemiSQL instances, like the
above too, or OrChem by Mark at the EBI...
Mark/Stefan,
how is ChEBI linking JChemPaint to the ChEBI database substructure searching?
Egon
--
Post-doc @ Uppsala University
Homepage: http://egonw.github.com/
Blog: http://chem-bla-ics.blogspot.com/
PubList: http://www.citeulike.org/user/egonw/tag/papers

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