Increase of serotypes 15A and 23B in IPD in Germany in the PCV13 vaccination era

Abstract

Background

This study presents an analysis of 1,491 serogroup 23 and 762 serogroup 15 isolates from invasive pneumococcal disease (IPD) in children and adults before and after the general recommendation for childhood pneumococcal conjugate vaccination in Germany in July 2006. Vaccination formulations used were PCV7 (from July 2006), PCV10 (from April 2009) and PCV13 (from December 2009, replacing PCV7).

Methods

The German National Reference Center for Streptococci (GNRCS) has conducted surveillance of IPD since 1992. Isolates were serotyped and tested for antibiotic susceptibility. Selected isolates were characterized using MLST.

Results

In an analysis of 23,957 isolates from IPD in children and adults sent to the GNRCS between July 1992 and June 2014, we found a strongly significant increase of non-PCV13 serotypes in the late vaccination (PCV13) period (2010-2014). Among these, the proportions of serotypes 15A and 23B were the most strongly significantly increasing. After the recommendation for pneumococcal conjugate childhood vaccination in 2006 and the introduction of higher-valent vaccines in 2009, the proportion of 15A increased significantly from 0.5% in the early vaccination period (2007-2010) to 2.4% in the late vaccination period (2010-2014, p=3.14x10-22). The proportion of serotype 23B increased from 0.5% to 2.8% in the same period (p=1.55x10-29). Penicillin non-susceptibility levels of the serotype 15A (47.4%) and serotype 23B (46.5%) isolates were high, with MIC values ranging from 0.12-2 μg/ml (15A) and 0.12-0.5 μg/ml (23B). MLSTs of serotype 23B isolates grouped in two clonal complexes (CC): CC439, with sequence type (ST) 439 as the main representative and CC338 (linked to CC156), with ST1349 as most prevalent clone. Both CCs have been present over almost the whole surveillance period. All penicillin non-susceptible isolates occurred in CC338. Serotype 15A isolates appeared to be more diverse. Six CCs, one group of three STs and two singletons were found among 20 isolates. Most prevalent was CC63, with ST63 as most prominent representative (n=5). Most penicillin non-susceptible isolates were found among CC63 isolates.

Conclusions

The prevalence of non-PCV13 serotypes in Germany has increased significantly between July 2007 and June 2014, with 15A and 23B being the most strongly increasing serotypes of all. Both serotypes show a high proportion of penicillin non-susceptibility.

Background

Streptococcus pneumoniae remains a major cause of infectious disease globally, especially in children. Invasive pneumococcal disease (IPD) causes over 1 million deaths among children worldwide [1]. The most important virulence factor of S. pneumoniae is the polysaccharide capsule on which pneumococcal vaccines are based.

A pneumococcal conjugate vaccine covering the seven serotypes most prevalent in IPD (4, 6B, 9V, 14, 18C, 19F and 23F; PCV7) has been available since 2001, and its use has resulted in a substantial reduction of vaccine type IPD in several countries where childhood vaccination programs were initiated [2-5].

However, an increase in serotypes not included in the vaccine (serotype replacement) was also observed. The most prominent replacement serotype was 19A, but increases in serotypes 1, 3 and 7F were also reported [6]. Introduction of higher-valent conjugate vaccines (PCV10: PCV7 serotypes + 1, 5, 7F) and PCV13: PCV10 serotypes + 3, 6A, 19A) has counteracted the increase of replacement serotypes, but once more bears the possibility of yet another round of serotype replacement. Indeed, reports from several countries have described increases of different non-PCV13 serotypes in both carriage and IPD [7,8], but so far no particular serotypes have become apparent.

In Germany, general childhood pneumococcal conjugate vaccination started in July 2006 when a vaccination recommendation for all children under the age of two years was issued by the German Standing Committee on Vaccination (STIKO). Vaccination began with a seven-valent vaccine (Prevenar®; PCV7), followed in 2009 by both a ten-valent vaccine (Synflorix®, PCV10) and a 13-valent vaccine (Prevenar13®, PCV13), with PCV13 replacing PCV7. Vaccination is fully reimbursed by health insurance and the choice of vaccine resides with the parents/paediatrician. Currently, more than 95% of all children in Germany that are vaccinated with a pneumococcal conjugate vaccine are vaccinated with PCV13.

Childhood pneumococcal vaccination has led to strong effects on the serotype distribution among IPD in vaccinated children. The incidence of PCV7-serotype IPD has decreased strongly. Although an increase in non-PCV7 serotypes was apparent, a net reduction in IPD was observed [3,9]. After the introduction of higher-valent vaccination, a further reduction of IPD caused by PCV13 serotypes was observed. Also among non-vaccinated children and among adults, the prevalence of vaccine serotypes strongly decreased (herd protection).

Analysis of non-PCV13 serotypes in the early vaccination (PCV7) period and late vaccination (PCV13) period showed that two serotypes, 15A and 23B were by far the most higly significantly increasing serotypes in the late vaccination period. The current study describes this highly-significant increase of serotypes 15A and 23B among IPD in children and adults in the late vaccination (i.e. PCV13) period in Germany.

Methods

Study material

The German National Reference Center for Streptococci (GNRCS) has conducted surveillance for IPD in Germany since 1992, using a laboratory-based approach to collect data about IPD among children (<16 years) and adults (≥16 years). Microbiological diagnostic laboratories from all over Germany were requested to send isolates of invasive pneumococcal disease to the GNRCS. Currently, over 300 laboratories participate, including the large, nationally-operating commercial labs. Over the years, the surveillance system has been improved. In 2001, surveillance for adults was enhanced in North Rhine-Westphalia (22% of German population), as well as in Bavaria and Saxony in 2006. On each occasion, all laboratories in the respective federal states were approached and asked to send in isolates. In 2007, a web-based surveillance system (Pneumoweb) was set-up in collaboration with the Robert Koch Institute. Pneumoweb enables the laboratories to report a case of IPD via an online reporting system, and at the same time, print the reported information to accompany the IPD isolate, which can then be sent to the GNRCS. The web-based system resulted in a large increase in reported cases for adults, whereas the amount of cases for children remained at the same high level.

Invasive pneumococcal disease cases were defined as S. pneumoniae isolates from blood, cerebrospinal fluid (CSF) or any other normally sterile body fluid. Cases were grouped per pneumococcal season (from July to June of the consecutive year) because of known infection clusters during winter.

Pneumococcal vaccination

A recommendation for pneumococcal conjugate vaccination for all children under 2 years of age was issued by the STIKO in July 2006. Germany does not have a national immunization plan, but vaccination costs of recommended vaccinations are reimbursed by health insurance companies. A seven-valent pneumococcal conjugate vaccine (PCV7) was licensed in Germany in 2001, followed by) in April 2009 and PCV13 in December 2009 (replacing PCV7). The choice of vaccine is made by the parents and the pediatrician.

Serotyping

Susceptibility testing

All strains were tested for antibiotic minimal inhibitory concentrations (MIC) using the broth microdilution method as recommended by the CLSI [10]. The microtiter plates (Sensititre NLMMCS10, TREK Diagnostic Systems Ltd., East Grinstead, UK) contained penicillin G (PEN), cefotaxime (CEF), clarithromycin/erythromycin (CLA/ERY), clindamycin (CLI), tetracycline (TET), levofloxacin (LEV), chloramphenicol (CHL) and trimethoprim/sulfamethoxazole (SXT) with cation-adjusted Mueller-Hinton broth (Oxoid, Wesel, Germany) and 5% lysed horse blood. Macrolide resistance testing was performed using erythromycin from 1992-2003 and from 2011-2014. From 2004 to 2010, clarithromycin was used. The current CLSI criteria were applied for interpretation [10]. To assess the development of penicillin resistance and in the definition of multidrug resistance, the ‘oral’ penicillin breakpoints were used (≤0.06μg/ml, 0.12-1μg/ml, ≥2μg/ml), since they give better insight into resistance development over time. Breakpoints used for other antibiotics were: clarithromycin/erythromycin, clindamycin: ≤0.25μg/ml, 0.5μg/ml, ≥1μg/ml, tetracycline: ≤1μg/ml, 2μg/ml, ≥4μg/ml, levofloxacin: ≤2μg/ml, 4μg/ml, ≥8μg/ml, chloramphenicol ≤4μg/ml, ≥8μg/ml and trimethoprim/sulfamethoxazole ≤0.5/9.5μg/ml, 1/19-2/38μg/ml, ≥4/76μg/ml. Isolates were considered multidrug-resistant when they were resistant to more than two different classes of antibiotics.

Multilocus sequence typing

Multilocus sequence typing of selected pneumococcal isolates was performed as described previously [11]. Briefly, internal fragments of the aroE, gdh, gki, recP, spi, xpt, and ddl genes were amplified by PCR from chromosomal DNA with the described primer pairs. A special allelic profile is provided by the alleles at each of the seven loci and their sequence type (ST) is defined. The allelic profiles were compared with each other and with other isolates in the pneumococcal MLST database using software available at http://pubmlst.org/spneumoniae/. Clusters of related STs were grouped into clonal complexes (CCs) using the program PHYLOViZ on the global database on http://pubmlst.org/spneumoniae/ [12].

Statistical methods

Differences in proportions were tested by Fisher’s exact test with a two-sided P value of <0.05 considered significant. Analyses were conducted using R (R Foundation for Statistical Computing, Vienna, Austria, 2014).

Ethical statement

An ethical approval was not required since the study was performed with Streptococcus pneumoniae isolates that resulted from routine microbiological diagnostic procedures as requested by the treating physician. No additional biological specimens were taken for the purpose of this study. Specimens were anonymized and only data on year and month of birth, sex, type of specimen and hospital/laboratory where the case was diagnosed were registered.

Results

From July 1992 until June 2014, a total of 3,853 isolates from IPD among children and 20,104 isolates from IPD among adults were sent to the German National Reference Center for Streptococci. Among these isolates 1,491 (6.2%) belonged to serogroup 23 and 762 (3.2%) to serogroup 15.

Since the start of childhood pneumococcal conjugate vaccination, the number of reported cases of IPD among children has decreased by about 50% (Figure 1A). The prevalence of the 13 vaccine serotypes strongly decreased after the start of PCV7 vaccination (due to the reduction of the seven serotypes included in this vaccine) but this decrease leveled off in 2009-2010. With the introduction of higher-valent vaccines, a further strong decrease was observed, which continues to date. Non-PCV13 serotypes increased both after the start of PCV7 vaccination as well as after the introduction of higher-valent vaccination (Figure 1A).

Figure 1

Numbers of IPD cases reported to the GNRCS per pneumococcal season (July in one year - June in the following year), for children (A) and adults (B).

Among adults, a strong increase of reported cases was observed in 2006-2007, when a new reporting system (Pneumoweb) was introduced. From 2007-2010, PCV13 serotypes remained at the same level, with PCV7 serotypes decreasing, but PCV13-non-PCV7 serotypes increasing. Starting from 2011-2012, a decrease in PCV13 cases was observed, which was off-set by a similar increase in non-PCV13 serotypes (Figure 1B).

The most strongly increasing non-PCV13 serotypes in the late vaccination period included 12F, 23B, 24F and 38 among children and 6C, 12F, 15A, 23B and 22F among adults. Among these 15A and 23B were by far the most strongly significantly increasing serotypes.

As a result of childhood pneumococcal conjugate vaccination (PCV7 and PCV10/13), the prevalence of vaccine serotypes has decreased considerably both among children as well as among adults. PCV7 serotype prevalence among children was reduced from 61.8% in the pre-vaccination period (1992-2006) to 23.5% in the PCV7 vaccination period (2007-2010; p < 0.05) and 5.2% in the PCV10/13 vaccination period (2010-2014; p < 0.05; Table 1). Among adults, PCV7 serotype prevalence was 43.4% prior to childhood vaccination, and fell to 24.7% (p < 0.05) and 8.2% (p < 0.05), in the respective vaccination periods. Similarly, the prevalence of PCV13 serotypes decreased from 84.4% to 70.3% (p < 0.05) and 40.8% (p < 0.05) among children and from 72.3% to 66.6% (p < 0.05) and 47.3% (p < 0.05) among adults (Table 1).

Table 1
Effects of PCV7 and PCV13 vaccination on IPD among children (0-15 years) and adults (≥16 years) in Germany

In serogroup 23, serotype 23F, which is contained in all pneumococcal conjugate vaccine formulations, decreased from 6.2% to 1.0% (p < 0.05). The two other members of this serogroup, however, increased in prevalence (23A: from 0.6% to 2.4% (p < 0.05); 23B from 0.2% to 2.8%; (p < 0.05; Table 1).

Serotype 23F was among the most prevalent serotypes among IPD in children in the pre-vaccination period, with up to 30 cases per season, mostly among children under the age of 2 years. Among adults, 23F was highly prevalent in all four age groups (16-49, 50-60, 61-75 and >75 years). In 2013-2014, 23F disappeared among children, and among adults only 13 cases were reported (Figure 2).

Figure 2

Numbers of reported IPD cases with serogroup 23 serotypes for children (0-1, 2-4 and 5-15 years of age) and adults (16-49, 50-60, 61-75 and >75 years of age (bars, left vertical axis), and percentage of all isolates (line, right vertical axis).

Serotype 23A was rarely reported in the pre-vaccination period. After the start of vaccination, its prevalence increased gradually, starting from 2006-2007 and mostly among adults (Figure 2).

Serotype 23B was even less prevalent than serotype 23A before the start of vaccination. In 2008-2009, two seasons after the introduction of PCV7, reports of serotype 23B strongly increased, and this increase continued till 2011-2012. The increase in reported cases was observed in all age groups. In 2013-2014, a less strong increase in serotype 23B cases was observed among adults, whereas a decrease in reported cases was seen among children (Figure 2).

In serogroup 15, an increase in prevalence was seen for serotype 15A but only in the late vaccination period (2010-2014; 0.5% to 2.4%, p < 0.05), and, to a lesser extent, for serotypes 15B/C (1.1% to 2.4%). Serotype 15F was very rare in Germany, with only 12 reported cases in 22 seasons of surveillance (1992-2014, with one case reported in the transition season 2006-2007; Table 1).

Reports of cases with serotypes 15B/C were rare in the pre-vaccination period. After the start of vaccination, more cases were reported resulting in a prevalence increase from 1.1% to 2.4% (p < 0.05). The increase was observed in all age groups (Table 1, Figure 3).

Figure 3

Numbers of reported IPD cases with serogroup 15 serotypes for children (0-1, 2-4 and 5-15 years of age) and adults (16-49, 50-60, 61-75 and >75 years of age (bars, left vertical axis), and percentage of all isolates (line, right vertical axis).

Serotype 15A cases were also rarely reported before vaccine introduction. Starting from 2008-2009, a strong increase in reported cases was observed, which continues to date, and seems to be most prominent among adults. The prevalence of serotype 15A has strongly increased in the late vaccination period, from about 0.5% (2008-2009) to 3.4% currently (2013-2014; p < 0.05). Serotype 15A was most often present among adults (Figure 3).

Antibiotic resistance levels of the serotype 15A and serotype 23B isolates are listed in Table 2. Among serotype 15A isolates, 47.4% were penicillin non-susceptible (PenNS), but all were susceptible to cefotaxime. The 15A isolates presented high rates of resistance to macrolides (48.7%), clindamycin (46.5%) and tetracycline (44.8%). Towards trimethoprim/sulfamethoxazole, 1.8% of the isolates were resistant whereas 5.6% showed intermediate resistance. Only 1.1% of isolates were chloramphenicol resistant and no resistance to levofloxacin was found. Multi-drug resistance was found in 145 out of 310 isolates (46.8%). Most MDR isolates (n = 128) were PenNS, and ERY, CLI and TET resistant. Others were PenNS and ERY and CLI resistant (n = 8), ERY, CLI, TET and SXT resistant (n = 3), PenNS and ERY, CLI, TET and CHL resistant (n = 2) and ERY, CLI and TET resistant (n = 1).

Serotype 23B isolates were PenNS in 46.5% of the cases, and all of these isolates were also cefotaxime susceptible. The non-susceptibility rate to trimethoprim/sulfamethoxazole was 42.3% (18.0% resistant and 24.3% intermediate resistant). Rates of resistance to macrolides (2.9%), clindamycin (1.0%), tetracycline (1.6%) and levofloxacin (0.3%) were very low. All isolates were susceptible to chloramphenicol. Multi-drug resistance was found in only 4 out of 312 isolates (1.3%). Two isolates were PenNS and ERY, CLI and TET resistant, one ERY, CLI, TET and SXT resistant and one ERY, TET and SXT resistant.

Serotype 23B PenNS isolates have MICs up to 0.5 μg/ml, but most PenNS cases have an MIC of 0.25 μg/ml. Among the 15A PenNS isolates, most have an MIC of 0.25 μg/ml as well. However, several cases with MICs of 1 and 2 μg/ml have appeared in the last two seasons (Table 2).

When looking at the serotype ranking of PenNS isolates, before the start of vaccination the first six places were occupied by serotypes 14, 6B, 9V, 19A, 23F and 19F (all PCV7 serotypes, except for 19A (PCV13)). In the PCV7-vaccination years, PCV7 serotypes gradually disappeared from the top ten, and serotype 19A became the main serotype associated with penicillin non-susceptibility. Also, serotypes 15A and 23B appeared among the top five PenNS serotypes. In the PCV13-vaccination period, serotypes 15A and 23B are the most prevalent PenNS serotypes, and 19A appeared only in third place (Table 3).

Table 3
Ranking of penicillin non-susceptible (MIC >0.06 μg/ml) isolates from IPD among children and adults in Germany before childhood vaccination (1992-2006) and after PCV7 (2006) and PCV10/PCV13 (2009) vaccination

Multi locus sequence typing (MLST)

MLST was performed for 21 isolates with serotype 23B and 20 isolates with serotype 15A (due to budgetary restrictions MLST could not be performed on all isolates). Isolates were selected to cover as much of the surveillance period as possible, and covering both penicillin sensitive and PenNS isolates.

Serotype 23B isolates grouped in two clonal complexes: CC439, with ST439 as the main representative and CC338 (which is part of the very large CC156 complex), with ST1349 as most prevalent clone. Both CCs have been present over almost the whole surveillance period. All PenNS isolates occurred in CC338, whereas CC439 only contained isolates fully sensitive to penicillin (MIC = 0.015; Table 4).

Serotype 15A isolates appeared to be more diverse. Six CCs, one group of three STs and two singletons were found among 20 isolates. Most prevalent was CC63, with ST63 as most prominent representative (n = 5). Most PenNS isolates were found among CC63 isolates (Table 4).

Discussion

In Germany, 7-valent childhood pneumococcal conjugate vaccination has led to strong changes in the serotype distribution among IPD cases, with serotypes 7F and 19A as the main replacement serotypes. Introduction of higher-valent vaccines in 2009 has once again changed the serotype distribution, strongly reducing the role of the six additional serotypes in IPD. In the late vaccination (PCV13-) period, several non-vaccine serotypes have gained importance, among which serotypes 15A and 23B were the most strongly increasing.

Among children, a decrease in incidence of IPD after the introduction of PCV7 in Germany has been described [3,9]. In the higher-valent vaccine period, a further decrease is observed. This is in accordance with reports from other countries where PCV13 has been used [7,8].

Among adults, a strong herd protection effect on the serotype distribution was observed, with PCV7 serotypes disappearing in the early vaccination (PCV7) period. However, this decrease was off-set by an increase of PCV13-non-PCV7 serotype among this age group. In the late vaccination (PCV13) period, the prevalence of PCV13-non-PCV7 serotypes was strongly reduced, but now a full replacement by non-PCV13 serotypes has appeared. So far, a reduction in IPD among adults could not be shown, only a dramatic change in serotype distribution. A trivial reason for this could partially be the incompleteness of our surveillance system, with increased reporting off-setting the decrease in IPD due to vaccination. However, it seems unlikely that this would continue over the course of seven consecutive vaccination years and would stay in exact ‘pace’ with the reduction.

With Germany introducing PCV13 in December 2009, just before the beginning of the next winter season and almost half a year earlier than other countries (UK, USA (both April 2010)), effects of PCV13 on the serotype distribution and the settling of a new serotype equilibrium among IPD can be expected to appear in Germany first. The strong changes in prevalence of different members of serogroups 15 and 23 are a first indication of the establishment of a new equilibrium among the remaining, non-PCV13 serotypes.

The strong reduction of serotype 23F is no surprise, and was observed in all other countries where PCVs were introduced [6]. However, an increase in serotypes 23B and to a lesser extent 23A was unexpected. Several countries have reported increased prevalence of serotype 23B among carriage isolates [13-16], which could be a first indicator for an upcoming increase among IPD. Steens et al. reported an increase in serotypes 23B (and 15A) among IPD in Norway [7]. An interesting point is that there is apparently no cross-protection from 23F-antibodies towards either 23A or 23B. This once more underlines how different even the ‘related serotypes’ are from each other immunologically. Similarly, no cross-protection of 19F-antibodies raised by PCV7 towards serotype 19A has been observed [17,18]. Both clones of 23B that are increasing in Germany were already present in the pre-vaccination period, although they were very rare. This shows that we are witnessing the expansion of existing clones, rather than the import of new ones. The increase in 23B has been particularly strong in the late vaccination (PCV13) period, and seems to be stronger in adults than in children. The CC439 clone has been reported from several European countries, USA, Brazil, Tunisia and Australia, and therefore seems to be a worldwide spread clone, which is also always linked to penicillin susceptibility (http://pubmlst.org/spneumoniae/). ST1349 (CC338) was reported from European countries only (Greece, France, Turkey, Germany) and was regularly associated with penicillin non-susceptibility (http://pubmlst.org/spneumoniae/).

Increased prevalence of serotype 15A in the vaccination period has been reported from several countries, but also here, mostly from carriage and non-invasive disease isolates [7,19-22]. Serotype 15A has been very rare in Germany before the start of vaccination, and, like for serotype 23B, its increase is caused by an expansion of existing clones. The expansion has been particularly strong in the late vaccination (PCV13) period, and mostly among adults. ST63, the most prevalent 15A clone in this study, has been reported with serotypes 14 and 19A (Africa, Asia, Australia, Europe) and also with multi-drug resistance profiles, so the possibility of a serotype switch from these vaccine type serotypes is not unlikely (http://pubmlst.org/spneumoniae/).

The reported serotype 15A and 23B isolates show a high level of penicillin non-susceptibility. Even though reported MIC values are still, for the larger part, in the ‘intermediate resistant’ range (0.12-1 μg/ml), an evolution towards higher penicillin resistance levels is not unlikely. Even now, serotypes 15A and 23B are the most prevalent penicillin non-susceptible isolates in Germany. So far however, for invasive infections other than meningitis, the MIC-values are still in the susceptible range, indicating that these infections can still be treated successfully with beta-lactam antibiotics. In a case report from 2003, a coinfection of blood and CSF with serotypes 23F and 23B in a Brazilian child was described [23]. Both isolates were penicillin non-susceptible (MIC: 0.125), which is the same level as found among the 23B isolates in this study. Martin et al. report the emergence of penicillin non-susceptible serogroup 15 among isolates from children with acute otitis media [24].

A limitation of our study was that the referral of isolates to the reference center was incomplete, since reporting IPD is not mandatory in Germany. However, reported cases show no regional bias, and referral patterns have been constant for years. For children, using our capture-recapture incidence calculations, we determined that before the vaccination recommendation, 40-50% of all IPD cases had a sample sent to the GNRCS. This percentage increased to 50-60% after vaccination introduction [25].

Conclusion

Our analysis shows that, after the introduction of higher-valent pneumococcal conjugate vaccination in Germany, the serotype distribution among IPD has changed dramatically once more. Clones of serotypes 15A and 23B, which were rarely reported in the pre-vaccination period, have started to increase. The increase was mainly in the late vaccination (PCV13) period and therefore seems to be an effect of higher-valent (PCV13) vaccination. A most worrisome fact is that almost half of the reported isolates of these two serotypes are penicillin non-susceptible, and, for serotype 15A, even multi-drug resistant. This is a situation reminiscent of the increase of serotype 19A reported in many countries after the introduction of PCV7 [26-28], and underlines the need for further careful monitoring of the impact of conjugate vaccines on the pneumococcal population.

Acknowledgements

We thank the microbiological laboratories in Germany for their cooperation and for providing the isolates. IPD surveillance in Germany is supported by the Robert Koch Institute and Wyeth Pharma GmbH / Pfizer Deutschland GmbH, Germany.

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Competing interests

ML has been a member of advisory boards for and has received research grants and speakers honorary fees from Pfizer, GSK, Merck and SanofiPasteurMSD. MI and SP report no competing interests.

Authors’ contributions

ML and MI conceived the study. ML and MI participated in the laboratory analyses, SP performed statistical analyses. ML drafted the manuscript. All authors read and approved the final manuscript.

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