Fusion

STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:query proteins and first shell of interactors

white nodes:second shell of interactors

Node Content

empty nodes:proteins of unknown 3D structure

filled nodes:some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PBAL39_10201

ATPase, AAA family protein (426 aa)

Predicted Functional Partners:

PBAL39_10211

ATP-binding protein (232 aa)

0.859

PBAL39_10206

Uncharacterized protein (492 aa)

0.859

PBAL39_11892

Aspartyl-tRNA synthetase (581 aa)

0.698

recR

Recombination protein RecR ; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO (205 aa)

0.676

PBAL39_10196

DEAD box-related helicase (ATP-dependent RNA helicase) (412 aa)

0.651

PBAL39_01672

Putative ATP-dependent DNA helicase (729 aa)

0.597

PBAL39_01172

ATP-dependent DNA helicase recQ (630 aa)

0.597

ruvC

Holliday junction resolvase RuvC ; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5’-terminal phosphate and a 3’-terminal hydroxyl group (187 aa)

0.560

PBAL39_10216

Lipoprotein PG3 (226 aa)

0.541

PBAL39_10900

Methionyl-tRNA synthetase ; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (716 aa)