Allison

Tree Position

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19)

POS-REF-ALT (hg38)

Blocks

Names

Region

McDonald BED

combBED

STR

FTDNAB3231

22087970-G-A

19926084-G-A

BY137543

Y

Y

+

15874245-T-G

13762365-T-G

Y

Y

+

16342256-A-AGAAG

14230376-A-AGAAG

7×GAAG

+

13669940-C-T

11514264-C-T

BY87763

+

16524258-A-C

14412378-A-C

BY108370

Y

Y

+

16903925-A-C

14792045-A-C

BY110987

Y

Y

+

8272480-TGGTGTTCA-T

8404439-TGGTGTTCA-T

+

17974824-C-T

15862944-C-T

BY118853

Y

+

24399592-C-A

22253445-C-A

Y

*

16305913-A-C

14194033-A-C

Y

Y

*

7927218-C-T

8059177-C-T

M3473 PF2868

Y

Y

*

14515173-T-G

12403378-T-G

PR1484

**

15921724-C-A

13809844-C-A

**

14398383-C-A

12277679-C-A

CTS2635

**

21528350-T-A

19366464-T-A

PR6610

**

18717812-A-G

16605932-A-G

**

13858249-C-A

11737543-C-A

**

14352921-G-T

12232216-G-T

**

18098885-G-C

15987005-G-C

PR6147

**

14529518-G-T

12417719-G-T

CTS2861 M1594

**

14886357-C-T

12774423-C-T

A20860

P98

**

3436218-G-A

3568177-G-A

L705

L706

**

18098825-T-C

15986945-T-C

**

15718964-G-C

13607084-G-C

**

17387296-A-C

15275416-A-C

**

9982529-T-C

10144920-T-C

**

15718966-C-G

13607086-C-G

**

16698481-G-A

14586601-G-A

CTS6146 M9181

**

15894763-G-T

13782883-G-T

**

16019278-G-T

13907398-G-T

**

22722477-A-G

20560591-A-G

S1565

CTS10717

**

28464214-C-A

26318067-C-A

**

9925961-G-C

10088352-G-C

**

10104535-AAGAACTATGTCGGAATTCNNN-A

10266926-AAGAACTATGTCGGAATTCNNN-A

**

8566930-A-T

8698889-A-T

**

3436225-T-A

3568184-T-A

**

8417425-T-C

8549384-T-C

**

8395781-T-C

8527740-T-C

F130 M1561

**

19562651-G-A

17450771-G-A

CTS10607

**

7589937-G-A

7721896-G-A

**

13445789-C-T

11290113-C-T

***

13462731-C-T

11307055-C-T

BY47068

***

13458782-A-T

11303106-A-T

***

13453263-C-T

11297587-C-T

***

14624294-C-G,T

12512494-C-G,T

***

13452618-T-C

11296942-T-C

***

13717054-CGCATTAGAACGGACT-A

11561378-CGCATTAGAACGGACT-A

***

14886386-C-T

12774452-C-T

P99

***

15092687-G-C

12980776-G-C

***

14492241-C-T

12380438-C-T

PR5137

***

13299065-C-T

11143389-C-T

***

13139320-C-G

10628806-C-G

***

13139319-C-T

10628805-C-T

***

13139207-C-T

10628693-C-T

***

10032083-C-T

10194474-C-T

BY83188

***

15496707-AGTAATAC-A

13384827-AGTAATAC-A

***

14492224-A-T

12380421-A-T

***

13482679-C-T

11327003-C-T

BY86102 FT30067

***

13668017-AATGGT-A

11512341-AATGGT-A

***

13703520-C-G

11547844-C-G

***

13734327-G-A

11578651-G-A

***

13748477-A-G

11592801-A-G

6×GAATG

***

13808053-A-T

11687347-A-T

***

13811679-AGTGGAATGGAGTCGAATG-A

11690973-AGTGGAATGGAGTCGAATG-A

***

13815557-G-T

11694851-G-T

***

13841891-G-T

11721185-G-T

***

13842203-G-A

11721497-G-A

***

13687406-C-T

11531730-C-T

***

13852741-C-A

11732035-C-A

Z1141

***

13861716-T-G

11741010-T-G

***

13728514-GGAATGGAATGGAACGGAATT-G

11572838-GGAATGGAATGGAACGGAATT-G

***

13664417-TGGAATGAAAC-T

11508741-TGGAATGAAAC-T

***

13861737-C-G

11741031-C-G

***

13861746-T-C

11741040-T-C

***

13861775-C-T

11741069-C-T

BY91560

***

13862658-T-A

11741952-T-A

***

13868775-T-G

11748069-T-G

***

14263487-AAAACTGC-A

12142781-AAAACTGC-A

***

13660508-C-G

11504832-C-G

***

13660507-T-A

11504831-T-A

***

14407169-CT-G

12286467-CT-G

16×T

***

10024558-G-C

10186949-G-C

***

17383844-AGATGT-A

15271964-AGATGT-A

***

15981818-C-T

13869938-C-T

***

58824970-G-C

56765901-C-G

***

24560976-A-T

22414829-A-T

P3_t2

***

25055933-C-G

22909786-C-G

g1

***

25199104-AGGCTGTATCT-A

23052957-AGGCTGTATCT-A

g1

***

25212145-CT-C

23065998-CT-C

P2_r1

10×T

***

25347033-A-T

23200886-A-T

P2_r1

***

25363802-T-A

23217655-T-A

P2_r2

***

25657077-A-AT

23510930-A-AT

P1_b3

12×T

***

26015325-CAT-C

23869178-CAT-C

P1_Y1

***

27372787-A-C

25226640-A-C

P1_g3

***

27732475-G-GA

25586328-G-GA

P1_Y2

11×A

***

27791818-T-A

25645671-T-A

P1_Y2

***

28802898-A-AG

26656751-A-AG

***

58823383-C-T

56767488-G-A

***

58829467-C-T

56761404-G-A

4×CCATT

***

24217239-TTAGAAA-T

22071092-TTAGAAA-T

P3_b1

***

58908836-A-G

56682035-T-C

***

58980502-C-T

56834355-C-T

***

13716711-G-GGATTC

11561035-G-GGATTC

***

6129173-TAACTTTTTAA-T

6261132-TAACTTTTTAA-T

***

7204312-CA-C

7336271-CA-C

***

10019471-A-AAGAGAG

10181862-A-AAGAGAG

***

19834115-TGGTTACAGGCCTAGCCAGCAAAGA-T

17722235-TGGTTACAGGCCTAGCCAGCAAAGA-T

P5_Prx

***

25200792-AGAAG-A

23054645-AGAAG-A

g1

9×GAAG

***

13458776-CTGTTG-A,C

11303100-CTGTTG-A,C

***

13140213-TCCTATTCTATTGAAC-C,T

10629699-TCCTATTCTATTGAAC-C,T

***

58908843-C-CGCACT,T

56682028-G-A,AGTGCG

12×CCATT

***

13446527-C-CTCCACTCCATTCCAT,T

11290851-C-CTCCACTCCATTCCAT,T

16×TCCAT

***

13451234-CTCCAT-C,CTCCAC

11295558-CTCCAT-C,CTCCAC

***

13680949-T-A,TGGAATTGAAA

11525273-T-A,TGGAATTGAAA

***

24347862-TCTTGACCTCATCATCTGCC-T

22201715-TCTTGACCTCATCATCTGCC-T

P3_t1

***

24202215-T-C

22056068-T-C

P3_b1

***

16249163-A-G

14137283-A-G

YSC0000779

***

22243418-T-A

20081532-T-A

DYZ19

***

16405118-A-T

14293238-A-T

***

16903748-T-A

14791868-T-A

***

17599184-G-T

15487304-G-T

BY57095

***

18008645-C-CTT

15896765-C-CTT

P7_Dst

30×T

***

18365052-CATAAGTTAAAA-C

16253172-CATAAGTTAAAA-C

P6_Prx

***

18639018-A-C,T

16527138-A-C,T

26×GT

***

19445251-CCGCA-C

17333371-CCGCA-C

***

19575893-TTCTC-T

17464013-TTCTC-T

P5_Prx

19×TC

***

19967191-TTGACCATGCCTTCTTAG-T

17855311-TTGACCATGCCTTCTTAG-T

P5_Prx

***

22099633-TTTA-T,TT

19937747-TTTA-T,TT

16×TTA

***

22147834-C-A

19985948-C-A

***

22147849-C-A

19985963-C-A

***

22226170-TA-T

20064284-TA-T

DYZ19

***

22261983-G-T

20100097-G-T

DYZ19

***

24105838-GGAAAAATAACC-G

21959691-GGAAAAATAACC-G

P3_b1

***

22272502-T-C

20110616-T-C

FGC27622

DYZ19

***

22306090-A-C

20144204-A-C

DYZ19

***

22337073-GT-G

20175187-GT-G

DYZ19

***

22340942-A-T

20179056-A-T

DYZ19

***

22340946-C-T

20179060-C-T

PF1153

DYZ19

***

22437770-T-A

20275884-T-A

DYZ19

***

22438479-G-A

20276593-G-A

DYZ19

***

22452015-G-T

20290129-G-T

DYZ19

***

22459814-T-G

20297928-T-G

A8220

DYZ19

***

22489983-G-T

20328097-G-T

DYZ19

***

22505094-T-A

20343208-T-A

DYZ19

***

23662619-AGT-A

21500733-AGT-A

***

23988000-G-GCA

21841853-G-GCA

11×CA

***

24004092-GACAGA-G

21857945-GACAGA-G

4×ACAGA

***

10020842-T-A

10183233-T-A

***

8703052-T-G

8835011-T-G

M5422 PF1561 V2471

***

9986423-A-G,T

10148814-A-G,T

***

24417154-G-A

22271007-G-A

***

8426377-GCTT-G,GC

8558336-GCTT-G,GC

22×CTT

***

13447057-G-A

11291381-G-A

***

13668091-G-A

11512415-G-A

***

13668101-C-G

11512425-C-G

***

13668111-T-G

11512435-T-G

***

13835255-T-A,G

11714549-T-A,G

***

13805415-T-A

11684709-T-A

***

13805416-G-T

11684710-G-T

***

22244924-G-A

20083038-G-A

DYZ19

***

22483469-G-T

20321583-G-T

DYZ19

***

13453942-T-G

11298266-T-G

***

13855635-C-G

11734929-C-G

***

13459627-G-C,T

11303951-G-C,T

***

13841212-AAGGGAATGGAATGGG-A

11720506-AAGGGAATGGAATGGG-A

***

58973941-CATTCT-C

56827794-CATTCT-C

***

13841245-G-T

11720539-G-T

***

13454851-C-T

11299175-C-T

***

13648974-G-A

11493298-G-A

***

13839918-A-G

11719212-A-G

***

13691193-C-A

11535517-C-A

***

20288983-A-AG

18127097-A-AG

P5_Dst

***

20602012-G-A

18440126-G-A

P5_Dst

***

24198919-CTG-C

22052772-CTG-C

P3_b1

***

13449321-C-A

11293645-C-A

***

13863759-GAACTGTGTAC-G

11743053-GAACTGTGTAC-G

***

13545303-G-GAA

11389627-G-GAA

***

13839241-GAAAAGAACGGACTCC-G

11718535-GAAAAGAACGGACTCC-G

***

9750099-AT-A

9912490-AT-A

10×T

***

13660513-A-G

11504837-A-G

***

5471896-A-AAAAGAAAG

5603855-A-AAAAGAAAG

17×AAAG

***

28802892-TG-T

26656745-TG-T

***

13833892-C-G

11713186-C-G

FGC71501

***

13453978-C-A

11298302-C-A

***

13648954-G-A

11493278-G-A

***

13668024-T-A

11512348-T-A

***

13668069-A-G

11512393-A-G

F18213

***

13833909-T-A

11713203-T-A

BY25814

***

13846535-G-A

11725829-G-A

***

13846539-A-C

11725833-A-C

***

28802877-T-A

26656730-T-A

***

13446602-T-C

11290926-T-C

***

10031992-C-T

10194383-C-T

***

13801236-G-A,C

11680530-G-A,C

***

13458132-G-A

11302456-G-A

***

13745339-GGAACGGAATT-G

11589663-GGAACGGAATT-G

***

13816828-C-G

11696122-C-G

***

28818293-A-G

26672146-A-G

***

13659435-C-T

11503759-C-T

***

13143897-A-C

10633383-A-C

***

58908830-C-T

56682041-G-A

***

58982882-A-T

56836735-A-T

***

58982938-T-C

56836791-T-C

***

13450129-T-C

11294453-T-C

***

13813564-C-A

11692858-C-A

***

13458496-C-T

11302820-C-T

BY49932

***

13717222-G-A

11561546-G-A

Z18386 BY7896

***

13839625-G-T

11718919-G-T

***

28799802-G-T

26653655-G-T

***

13649008-T-C

11493332-T-C

***

13817920-C-A

11697214-C-A

***

13856667-G-C

11735961-G-C

***

28799726-T-A

26653579-T-A

***

28799797-G-T

26653650-G-T

***

14612234-G-T

12500440-G-T

***

13447072-C-T

11291396-C-T

***

9966443-T-A

10128834-T-A

***

6225989-C-CTTCTTTCT

6357948-C-CTTCTTTCT

IR3_Dst

13×TTCT

***

18479588-GA-G

16367708-GA-G

P6_Dst

11×A

***

8979107-T-C

9141498-T-C

***

13648993-G-A

11493317-G-A

BY86988

***

24773510-GGT-G

22627363-GGT-G

P3_b2

8×GT

***

58908927-C-G

56681944-G-C

***

13844512-AGGCATTTCAATGGAATGGAATAGGT-A

11723806-AGGCATTTCAATGGAATGGAATAGGT-A

***

58830453-G-C

56760418-C-G

4×CATTC

***

13803234-T-A

11682528-T-A

***

13698958-G-A

11543282-G-A

***

13865860-G-T

11745154-G-T

***

13865861-A-C

11745155-A-C

***

28143480-CT-C

25997333-CT-C

P1_b4

10×T

***

13936147-G-C

11815441-G-C

***

13936159-A-G

11815453-A-G

***

13862058-T-A,G

11741352-T-A,G

***

13648987-T-A

11493311-T-A

***

5471900-G-A

5603859-G-A

***

6182796-TGATTA-G

6314755-TGATTA-G

IR3_Dst

***

6347686-A-AAAAGAAAGAAAG

6479645-A-AAAAGAAAGAAAG

14×AAAG

***

6837868-A-C

6969827-A-C

***

6943717-ACTCTGT-G

7075676-ACTCTGT-G

***

6961447-T-C

7093406-T-C

***

7105709-CGT-C

7237668-CGT-C

***

7251313-C-T

7383272-C-T

CTS1173

***

8530893-AT-A

8662852-AT-A

9×T

***

13648936-C-CACGAA

11493260-C-CACGAA

***

8794264-G-T

8926223-G-T

***

9189278-TCAAAA-T

9351669-TCAAAA-T

6×CAAAA

***

9232404-CGGGAGT-G

9394795-CGGGAGT-G

***

9964881-T-A

10127272-T-A

***

22506768-T-G

20344882-T-G

DYZ19

***

24749662-A-G

22603515-A-G

FGC61358

P3_b2

***

13459203-TTGCATTCCAACTGAC-T

11303527-TTGCATTCCAACTGAC-T

***

28817238-G-A

26671091-G-A

***

13447331-C-A

11291655-C-A

***

13676263-G-A

11520587-G-A

***

13676270-T-A

11520594-T-A

***

10019452-GA-G

10181843-GA-G

***

13740761-G-C,T

11585085-G-C,T

***

13830092-C-A

11709386-C-A

***

28808563-T-A

26662416-T-A

***

8333590-T-C

8465549-T-C

***

13676620-G-A

11520944-G-A

***

17794253-G-GTTCT,T

15682373-G-GTTCT,T

10×TTCT

***

13489299-G-A

11333623-G-A

***

13686865-A-T

11531189-A-T

***

13817935-C-A

11697229-C-A

***

13195064-G-T

11039388-G-T

***

28802895-A-C

26656748-A-C

***

22491094-G-C

20329208-G-C

DYZ19

***

13648876-A-C

11493200-A-C

***

13648877-T-A

11493201-T-A

***

13142250-C-T

10631736-C-T

***

26204094-AT-A

24057947-AT-A

P1_Y1

10×T

***

13453318-G-C,T

11297642-G-C,T

12×CATTC

***

13830194-T-G

11709488-T-G

FT236402

***

25953249-C-A

23807102-C-A

P1_Y1

***

10007100-C-T

10169491-C-T

***

13715544-G-T

11559868-G-T

***

13744060-G-T

11588384-G-T

***

15426311-A-G

13314431-A-G

PR1805 FT76418

***

15426341-A-G

13314461-A-G

***

15426344-C-A

13314464-C-A

***

22362012-G-C

20200126-G-C

BY52464

DYZ19

***

28787069-GC-AG,G

26640922-GC-AG,G

***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.