README.rst

Cortexpy is a Python package for sequence analysis using linked and colored De Bruijn graphs such as
the ones created by Cortex and Mccortex.
This project aims to mirror many of the features contained in
CortexJDK.

Cortexpy also comes with a command-line tool for basic inspection and manipulation of Cortex graphs with and without links.

Audience

The audience of cortexpy is researchers working with colored De Bruijn graphs and link information in Cortex and Mccortex format.

Free software

Cortexpy is free software; you can redistribute it and/or modify it under the
terms of the Apache License version 2.0. Contributions are welcome. Please join us on GitHub.