Scott Roberts released a simple yet easy to use Python script to store and query your collection of malware samples into a SQLite database. The process is simple; it allows storage (indexing basic sample metadata) and retrieval of your samples. The database allows for query by filename, MD5 and SHA256 hashes. The malwarehouse package can be downloaded here.

I changed my database location from the malwarehouse.py script option_base_dir = os.path.expanduser("~/Desktop/malwarehouse/") to option_base_dir = os.path.expanduser("~/malwarehouse/") because this server doesn't have X-Windows running.

Reviewing the last 3 recorded inserted into the malwarehouse database:

If you are looking for a simple and yet effective way of tracking your malware samples, malwarehouse is probably for you. I'm sure Scott Robert is open to suggestions to improve this project . His contact information is listed on the Github download page.