On 8/9/07, Charles R Harris <charlesr.harris@gmail.com> wrote:
>>>> On 8/8/07, David Cournapeau <david@ar.media.kyoto-u.ac.jp> wrote:
> >
> > Charles R Harris wrote:
> > > Anne,
> > >
> > > On 8/8/07, *Anne Archibald* <peridot.faceted@gmail.com> > > <mailto: peridot.faceted@gmail.com>> wrote:
> > >
> > > On 08/08/2007, Charles R Harris <charlesr.harris@gmail.com> > > <mailto: charlesr.harris@gmail.com>> wrote:
> > > >
> > > >
> > > > On 8/8/07, Anne Archibald <peridot.faceted@gmail.com> > > <mailto: peridot.faceted@gmail.com>> wrote:
> > > > > Oh. Well, it's not *terrible*; it gets you an aligned array.
> > > But you
> > > > > have to allocate the original array as a 1D byte array (to
> > > allow for
> > > > > arbitrary realignments) and then align it, reshape it, and
> > > reinterpret
> > > > > it as a new type. Plus you're allocating an extra ndarray
> > > structure,
> > > > > which will live as long as the new array does; this not only
> > > wastes
> > > > > even more memory than the portable alignment solutions, it
> > > clogs up
> > > > > python's garbage collector.
> > > >
> > > > The ndarray structure doesn't take up much memory, it is the
> > > data that is
> > > > large and the data is shared between the original array and the
> > > slice. Nor
> > > > does the data type of the slice need changing, one simply uses
> > > the desired
> > > > type to begin with, or at least a type of the right size so that
> > > a view will
> > > > do the job without copies. Nor do I see how the garbage
> > > collector will get
> > > > clogged up, slices are a common feature of using numpy. The
> > > slice method
> > > > also has the advantage of being compiler and operating system
> > > independent,
> > > > there is a reason Intel used that approach.
> > >
> > I am not sure to understand which approach to which problem you are
> > talking about here ?
> >
> > IMHO, the discussion is becoming a bit carried away. What I was
> > suggesting is
> > - being able to check whether a given data buffer is aligned to a
> > given alignment (easy)
> > - being able to request an aligned data buffer: requires aligned
> > memory allocators, and some additions to the API for creating arrays.
> >
> > This all boils down to the following case: I have a C function which
> > requires N bytes aligned data, I want the numpy API to provide this
> > capability. I don't understand the discussion on doing it in python:
>>> Well, what you want might be very easy to do in python, we just need to
> check the default alignments for doubles and floats for some of the other
> compilers, architectures, and OS's out there. On the other hand, you might
> not be able to request a c malloc that is aligned in a portable way without
> resorting to the same tricks as you do in python. So why not use python and
> get the reference counting and garbage collection along with it? What we
> want are doubles 8 byte aligned and floats 4 byte aligned. That seems to be
> the case with gcc, linux, and the Intel architecture. The idea is to create
> a slightly oversize array, then use a slice of the proper size that is 16
> byte aligned.
>> Chuck
>
For instance, in the case of linux-x86 and linux-x86_64, the following
should work:
In [68]: def align16(n,dtype=float64) :
....: size = dtype().dtype.itemsize
....: over = 16/size
....: data = empty(n + over, dtype=dtype)
....: skip = (- data.ctypes.data % 16)/size
....: return data[skip:skip + n]
Of course, now you need to fill in the data.
Chuck
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