Had to get the shop to replace one of mine (garage door attacked it) With the material they are made of most shops will just replace due to labor in fixing.
Shop here replaced flare and clips, plus replace all 4 of the mudflaps. Now my spot was pretty large. If you have a small area they may be able to work on it on the truck.
I do not know if the come color matched, I know the ones I have seen "new" off a truck are all black.