I have a project created that I run thru windows task scheduler to update the documentation automatically. The scheduled tasks complete succesfully, but the web pages do not show new objects.
When I run SQL Doc 2 manually and open the project, the new objects show in the UI. Running the Generate Documentation completes succesfully. But the new objects are not there.

The scheduled task uses the /force switch.
Running the generate manually prompts to overwite and I click Yes.

If you need the project file, let me know and I can email it.

I found the resolution to this challenge.
Appearantly with update 2.0.1.51 (or one previous) the path structure has changed.
Now the server name is a folder in the path. That is why I was not seeing the changes.