Study

COSU351

GRCh38 · COSMIC v84

This section shows a general overview of information for the selected
study (COSU identifier) or publication (COSP identifier). Studies may
have been performed by the Sanger Institute Cancer Genome Project, or
imported from the ICGC/TCGA. You can see more information on the
help pages.

AA Mutation

Sample ID

Sample Name

ID NCV

Annotation

Zygosity

Chromosome

Genome start

Genome stop

Genome version

Strand

WT seq

Mut seq

FATHMM-MKL

This tab shows the gene expression and copy number variation data for this study
[more details]

Table Information

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The table currently shows only high value (numeric) copy number data. Copy number segments are excluded if the total copy number and minor allele values are unknown.

Click here to include all copy number data. For more detailed information about copy number data and gain/loss definitions click here.

Sample

Gene

Expression

Expr Level (Z-Score)

Over Expressed; Z-Score > 2.0

Under Expressed; Z-Score < -2.0

Normal; Z-Score within the range -2.0 to 2.0

CN Type

Minor Allele

Copy Number

CN Segment Posn.

Average Ploidy

1. N/A represents cases where the average ploidy value is not available( mostly ICGC samples). For some TCGA samples where the minor allele information is not available the average ploidy value could not be calculated.

2. For TCGA samples, the ASCAT algorithm was used to calculate the average ploidy.

3. For CGP samples, the PICNIC algorithm was used to calculate the average ploidy.

CNV

This table lists the samples in the selected study which have low/high methylation for each gene.
[more details]

Methylation (no. samples)

Tissue

Gene

Probe

Position

Low

High

Tested

This tab shows the fusion mutations observed in this sample
[more details]