I am gathering more references from various sources. When I will have enough, I will add a few other bibliographies about research papers, links to courses, etc.

If you are a beginner and you want to know the basics about Java Card, there is only one reference, the book from Zhiqun Chen. It is a few years old, but it is a very good introduction. And if you want to get more general information about smart cards, the book from Wolfgang Rankl: