gmei at my-deja.com wrote:
>> Hi:
>> When I use Consed to contig DNA sequences, I saw sequences aligned
> against each other. But in DNA sequences, some letters are in lower case
> and some are in upper case. Does anyone know if there is any meaning of
> that?
>> Thank
>> Sent via Deja.com http://www.deja.com/> Before you buy.
The uppercase nucleotides have a better quality value than lowercase
ones.
Try to click at a letter with the mouse cursor and watch the
standart-out (the xterm you started consed in). It will output the
quality value of the nucleotide.
regards,
--armin
--
"To save energy
the light at the end of the tunnel
will temporarily be switched off."