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I would create a ticket with Splunk on this one, be sure to include a diag. To get a diag - use command line to get out to the $SPLUNK_HOME\\bin directory, then type "spunk diag". The diag should be exported in the var directory.

In the meantime, install the export to excel app and see if that will allow you to export your data correctly. You will have to copy and paste the module from the app into the search app's view.