After finishing up the first part of the game, Cozumel, you'll start off with a cutscene of the plane prior to the crash that was shown at the beginning of the game. What happens during the cutscene is the following: They decide to look for a cloudy mountain, finding it, end up getting into a bad storm, and Lara gets separated from Jonah and their pilot, Miguel.

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When you get to control Lara again, you won't have any of your old equipment. Walk forward towards the path and collect any collectibles along the way.

There are some trees you can take branches from; These are useful for crafting arrows by holding down the button you use to fire them (without aiming). You'll also finds some Mirabilis plants which can be collected to create Focus mixtures.

Focus mixtures can be crafted later on in the game, so be sure to pick these up!

You'll eventually find a little cliff and see that someone shot up a flare, likely Jonah or Miguel. Continue down the path, and on one of the trees you'll be able to pick up some feathers from a nest. These can also be used to craft arrows as well as restoring outfits. Continuing on, you'll eventually come across a fireplace, or base camp from now on.

There's a handkerchief in this area to the right of the base camp from where you came from, so make sure to get it. There is also a flight log next to the camp, get it before sitting there.

Here at base camps, you can upgrade your skills, manage your equipment/upgrades, and also fast travel, although the latter two will be unlocked later on.

In the next area, you'll find some of your old stuff, but it needs to be cut down with a knife in order to reach it.

You can find a makeshift knife by interacting with the front of the plane, which will cause the plane to fall into the water.

Go into the water and try to get the piece of metal off of the rotor. An eel will attack you, but you will need to kill it with the piece of metal once Lara pries it off. Once you have it, you will need to sharpen it in order to cut the rope.

Collect shrapnel from three small boxes located in the area in order to sharpen your knife. They have little cogs on top of them as indicators. Once you've obtained all three, head back to the fireplace and you'll have unlocked the inventory option, and you can craft the makeshift knife.

Once you cut the ropes, you'll need to climb up some trees and jump onto a smal cliff in order to cut some more ropes holding up your gear.

Once you get your bow back, you can do some extra things in this area.

First off, you can do a small challenge involving shooting down some oropendola nests that are hanging from trees which will give you experience once you knock them all down. Use the highlight option to find them. Next, there is a Challenge Tomb in the north-west part of the area, which unlocks the Eveningstar's Boots, so look out for that! There are also a ton of collectibles in this area, so look out for those, as well as some murels and hidden treasure in the area as well.

However, to continue the story, use your bow to create a rope across the cliff on the west side of the area. Climb across to the ravine and continue down the path until you find a flare on the ground and some blood on a rock.

Keep going and you'll eventually find out that some jaguars killed Miguel. Continue down the path, and you'll eventually get to an arena where you need to fight the two jaguars.

The fight isn't too difficult, just focus on shooting them while walking backwards. When they get next to you, just mash the dodge button and you'll get away from them. Don't just sprint because they will just catch you. If you run out of arrows, hold down the shoot button when not aiming and you'll craft some arrows. If you can't craft any of them, there are some feathers and hardwood lying around that you can pick up to craft them.

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Once one of the jaguars is dead, pick up any collectibles in the area and move on.

You'll find Jonah after finding the plane, as well as your axe. You'll talk to Jonah and he'll say he has a parasite in his arm, which Lara will take out. There will be another fireplace here, and you can actually upgrade your bow now if you want to. You can find a list of this bow's upgrades and required materials here.

After having Jonah get you into the next area, you'll find a bridge that you need to raise in order to get to the other side. There's a mural here near the entrance to the area, as well as a Proficient Quechua Monolith that you can decipher once you learn some more Quecha. There are many different kinds of monoliths, and deciphering them usually leads to hints to hidden areas with all kinds of collectibles.

In order to bring the bridge up, you need to start by starting the water flow at the top of the ruins.

Then, have Jonah help you push the lever near the bridge.

Once you do that, run down or jump down from the end of the bridge to the area at the bottom and fire a rope from that side to the other and connect it to the thing that rolls down. The bridge will then be raised up and you can walk across it, but make sure to look around since there are some collectibles in this area as well.

In the next area, you'll learn how to use Perception Plants, which basically highlight animals and plants for a short period of time. Continue onwards, and you'll find another base camp. After that, one path leads to a Challenge Tomb (unlocks Eagle's Perch) and the other leads to the next story area. You'll get attacked by a jaguar because Jonah is useless, and you'll need to fight it. It'll be exactly like the earlier jaguar fight, so you shouldn't have too much trouble.

Once the jaguar is dead, Lara and Jonah will talk about some personal things and then fall asleep.

Lara wil‎l fall asleep and you'll play out a dream sequence where she is a young girl and her father is still alive. There's not much you can really do here, so just follow the path the game tells you to go. As long as you follow the path, you'll eventualy reach a large museum room where you'll need to "free the white queen".

The puzzle is pretty simple: Go to the large globe and turn it until you get 30 degrees North and 90 degrees East.

Once that happens, climb up the ladder that drops down and go to the other side of the room, then open the bat's wings.

Once they're open, go back downstairs and place the shield statues on top of the lights.

Once you've done that, you'll find out where the white queen is. Go back to the globe and readjust the coordinates to anything other than 30 N and 90 E and the ladder will retract, allowing you to get to the white queen.

Take her out and put her between the two knights with shield, and a door will open behind the place where the queen was.

Go there, and a cutscene will play out regarding Lara and her family.

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The cutscene will end and Lara will wake up from the dream. Continue on the path and collect any collectibles in the area.

Eventually, you'll reach a road and there will be a bunch of Trinity soldiers there. Stealth kill the one that's alone and Jonah will take care of the other one. Head to the small hidden path on the left and then kill the guy on top of the ledge via a stealth kill while on the ledge. Crawl under the tank and stealth kill the two guys there. There will be some armored guys who come around, wait for them to be seperated and stealth kill him. Go to the ledge and a small cutscene will play out in which you kill the other armored guy and another local.

After the cutscene, you'll obtain a Vicar Mark II, an assault rifle, as well as a pistol, the AB.45. Go into the cave and keep going along the path, collecting any collectibles in the area. You'll come across some wood blocking the way: Craft a fire arrow by holding the button that comes up on your screen, and fire at the wood. It will burn and you can continue down to Kuwaq Yaku, in which a cutscene will occur in which you meet a woman named Abby who will help you find some local ruins that might lead to the hidden city. Once that cutscene is over, you'll begin the next section of the game: the Hidden City.