This doesn't seem right to me. If is understand correctly, 'Test_A' is passed to -t and 'Test_B' to -T. Instead, commander seems to say -t and/or -T passed (T: true is present when you pass only -t too), and two strings are passed without context. Maybe there's something wrong with the program.option() things. Maybe my knowledge about command line arguments is incorrect, but I don't think to this extent. Just the same, I made a parser myself. Not sure if it follows any standard, but it works for me, for now. I will update the documentation shortly.

Next week I'll look into norma to see how it changes the format of papers from XML/HTML to sHTML, and ChemicalTagger to see how it recognises sentences.