Hi Sarah,
An external display application configuration was recently added for the
BAM datatype for IGV. In your local Galaxy instance, you can enable it by
removing the comments from around:
<!-- <display file="igv/bam.xml" /> -->
in your datatypes_conf.xml file for the BAM datatype. This will let users
view in a local IGV instance or using web start.
Thanks for using Galaxy,
Dan
> Hello,
>> currently we are using Galaxy as our main data storage to try and keep
> as few duplicates of the data as possible. However, some of our
> biologists prefer to view their data for example in IGV. Due to the many
> files it is bothersome for them to download all the data to their own
> computer to display it (they are running out of disc space). IGV has the
> possibility to access data through an http link, but the download links
> in Galaxy don't work, because they do not have a file ending. So my
> question is: is there a way to get an http link from Galaxy that
> directly points to the file?
>> Best regards,
> Sarah Diehl
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