hmmmm.. The file is not /etc/yum.repo.d/ , its the folder, there should be different files in it.. in any of these files should contain the source entries.. but if you remove the skype source from the gui, then its the same thing.. so no worries.

apart from that, do the following..

Code:

yum clean all

ultimately it will clear the cached packages and headers.. after it, do a update .. it should fix the issue.. in anycase, do reply ..

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