We import the previously defined hypo- and hyper-methylated sites. And then apply clustering of those sites over the all READ tumor samples. We grouped samples into 4 clusters for hypo- sites, and 2 clusters for hyper- sites.

Part4 '10"15 - Kaplan Meier Survival Curve Analysis

We use Kaplan-Meier Survival Curve tool to see the effect of the parameters. Interestingly, it shows hypo-methylated sites do not have clear effect though, hyper-methylated sites may be able to separate samples into good and bad outcomes.

Please take an Online Training for a full instruction of the data analysis.