Clade genomics of Vertebrates.

We have developed a pipeline for clade analysis. Orthologs are predicted between all pairs of genomes using
Leo Goodstadt's PhyOP. Pairwise orthology
predictions are then clustered and multiple alignments are built for each cluster using
Robert Edgar's MUSCLE. Phylogenetic trees are estimated using
Heng Li's TreeBeST.

The result of this pipeline, clusters, trees and multiple alignments, can be accessed via these
pages.