cells2numbers/neutrominer: Package for Creating and Analyzing Migration Profiles for Single Cell Tracking / Time Lapse Data

Trajectory data of in vitro cell tracking experiments is difficult to analyze in an automated and standardized way. To analyze, visualize and aggregate these data sets, migrationminer implements different methods to characterize single (cellular) trajectories including speed, directionality, forward migration index or the chemotaxis index. Different methods are provided to assess the tracking quality including 2D / 3D visualizations and automated.