Elementolab/ChIPseeqer use

From Icbwiki

ChIPseeqer

This step assumes that mapped read files have been split into one file per chromosome (in directories named CHIP/ and INPUT/ - other directory names can be used). You are then ready to run ChIPseeqer and find peaks in your ChIP-seq data.

Chromosome : chromosome name
Start_Position : the first (genomic) coordinate of the peak
End_Position : the second (genomic) coordinate of the peak
Avg_p-value : average log p-value of the nucleotides in the normalized peak region
Score : score estimated as the average ChIP reads/length of peak (minus the average INPUT reads/length of peak - if INPUT is available)
Posmaxpeakheight : the position of the maximum height of the peak
Maxpeakheight : the maximum peak height (in reads)
RelPosMaxPeakHeight(%) : the relative position of the maximum height of the peak, e.g., 50% means the highest point is at the middle of the peak
Peak_Size : the size of the peak (in bp)
Mid_point : the middle position of the peak
Summit_dist_from_mid : the distance of the maximum height from the middle of the peak