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The best ways to deal with Sableye is to either take it out with brute force, or render it stall/setup unusable. With the introduction of Mega Sableye a counter must also be able to prevent/deal with Calm Mind setupers, narrowing down the possible counters. Nevertheless we we look into several Pokemon that can deal with Sableye.

Due to Sableye's Prankster boosted Will-o-Wisp physical attackers have a hard time taking on Sableye. Talonflame's Fire type makes it one of the few viable physical attackers that can take it on. As such, behold:

Even with max Def Sableye is severely damaged by BB, and a SD set can easily set up on Sableye to allow a sweep. Yet, Talonflame can still be threatened by Sableye's Knock Off or Foul Play. At the same time Talonflame have issues with the bulkier Mega Sableye, so it isnt a perfect counter.

Prior damage or a single entry hazard allows Hera to demolish Sableye, and unlike Talonflame Hera isnt very damanged by Knock Off/Foul Play. At the same time another item (Choice Band/Life Orb) allow it to kill Sableye even easier. So if you need a physical attacker to take Sableye on Heracross is your guy.

Likewise the mega form isnt faring much better. Just keep in mind that after a few Calm Minds MSableye can and will take a Hyper Voice, so MGardevoir also isnt a perfect counter.

Sableye @ Leftovers
Ability: Prankster
EVs: 252 HP / 4 Atk / 240 SpD / 12 Spe
Careful Nature
- Taunt
- Knock Off
- Will-O-Wisp
- Recover
One way to deal with Sableye is to use your own. Give it enough Speed and Taunt and "normal" Sableyes become near usless, giving you switch initiative or a free Burn/lost item. However, this Sableye can't, under any situation deal with Mega Sableye. So what we have is a Pokemon that can deal with it 100% of the times under the right circumstances, but not at all under the worst.

Absol @ Absolite
Ability: Justified
EVs: 252 Atk / 4 SpA / 252 Spe
Hasty Nature
- Sucker Punch
- Swords Dance
- Flamethrower/Knock Off
- Play Rough
Finally, Magic Bounce users in general can deal with normal Sableye, but get demolished by MSableye. Enter MAbsol. With its ability and setup potential no Sableye on the planet is safe from it. Bar the slight risk of switching in Absol can easily stop any Sableye dead in its tracks.

Well, Whimsicott is an exellent counter, as it does the same thing Sableye does, only better.
What you want is a Pokemon who can set up Toxic and Tuant, whist hiding behind a substitute, and Whimicott does this best.