Statistics-Reproducibility
This module facilitates investigation of reproducbility between multiple replicates of
quantitative experiments e.g. SILAC or microarray. Scatter plots are great, but
only 2d. Some people use correlation as a proxy for reproducibility, but it's not right.
This module helps you through the following items...
1) Summarize reproducibility across the replicates
2) Pick out replicates that agree more or less
3) Summarize reproducibility for individual proteins/genes/whatever
4) Set a cutoff for what you can call significant, based on precision
5) Deal with missing values (common in SILAC)
CHANGELOG
v0.03 20130828 Prerequisites fixed (I hope)
v0.02 20130827 Table output bugs fixed :-) Run bug fixed
v0.01 20130826 First version :-/ known bug with table output \-:
INSTALLATION
To install this module, run the following commands:
perl Makefile.PL
make
make test
make install
SUPPORT AND DOCUMENTATION
After installing, you can find documentation for this module with the
perldoc command.
perldoc Statistics::Reproducibility
You can also look for information at:
RT, CPAN's request tracker (report bugs here)
http://rt.cpan.org/NoAuth/Bugs.html?Dist=Statistics-Reproducibility
AnnoCPAN, Annotated CPAN documentation
http://annocpan.org/dist/Statistics-Reproducibility
CPAN Ratings
http://cpanratings.perl.org/d/Statistics-Reproducibility
Search CPAN
http://search.cpan.org/dist/Statistics-Reproducibility/
LICENSE AND COPYRIGHT
Copyright (C) 2013 Jimi Wills
This program is free software; you can redistribute it and/or modify it
under the terms of the the Artistic License (2.0). You may obtain a
copy of the full license at:
L
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