* In the {{{Check for missing directories}}} section, hyperspectral/owl is looked for. This should be thermal/owl. This ties in with the point listed below when the project layout is built. This is due to incorrect key list in the folder_structure module.

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~~* In the {{{Check for missing directories}}} section, hyperspectral/owl is looked for. This should be thermal/owl. This ties in with the point listed below when the project layout is built. This is due to incorrect key list in the folder_structure module.~~

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* ~~Currently, {{{proj_tidy.missing_directories}}} calls {{{folder_structure.FolderStructure}}}'s constructor, which returns a full list of the directories that are expected to be in the project directory. This could be changed by either adding another function to proj_tidy.py that looks for regex instead or changing the FolderStructure constructor so that it can just return the relevant directories if necessary.~~

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* This was achieved by updating the missing_directories function. I changed it so that it now takes arguments that determine which missing directories it should look for. For example, it has the {{{check_hyper}}} argument, which {{{false}}} will be passed in to if there is no hyperspectral data. The Python function will check this argument and if it is false, will remove the path if it contains "/hyperspectral". The other arguments work in a similar way.