Clan: Cobalamin (CL00101)

Summary

Cobalamin clan

The Cobalamin clan contains the RNA families for Cobalamin riboswitches and the AdoCbl riboswitch from Enterobacteria. The following bioinformatic methods were used to confirm the relationship between these families: CMSEARCH [1]. The relationship and distinction between these RNA families has been noted in the published literature [2,3].

This clan contains 3 families and
the total number of sequence regions in the clan is
9,390.

Members

Structures

For those sequences which have a structure in the
Protein DataBank, we
generate a mapping between EMBL, PDB and Rfam coordinate
systems. The table below
shows the mapping between the Rfam families in this clan, the
corresponding EMBL entries, and the region of the three-dimensional
structures that are available for that sequence.

Loading structure mapping...

Secondary structures

This tool allows you to view the secondary structure images of two
clan members side-by-side. Choose the family structures using the two
drop-down menus below.

Alignments

The table below shows the number of occurrences of each family throughout
the sequence database. In brackets beside each number is the percentage
of the total number of sequence hits for the clan that are represented by
this family. The rightmost column provides a link to the alignments tab
for each family.