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The exact resumption of hostilities is unknown; by 24 March 2006, the BBC was reporting the "most serious clashes for almost a decade" with almost 70 dead.[4]

In May 2006, the fighting intensified between warlords and militia loyal to ICU, which controlled around 80% of the city. On 4 June 2006, the ICU seized Balad, 30 miles north of Mogadishu. Balad had previously been under the control of forces loyal to Musa Sudi Yalahow.[5] By 5 June, at least 350 people, mostly civilians, had been killed.[citation needed]

On 5 June 2006, Sheikh Sharif Ahmed, the ICU's chairman, reportedly seized Mogadishu, saying in a radio broadcast: "We won the fight against the enemy of Islam. Mogadishu is under control of its people." [7] The ICU's success has been attributed to the Islamic movement's ability to transcend clan politics.[8]

Following Mogadishu's fall, there were two competing rallies. Mogadishu's largest clan, the Abgals, held a rally in the city's northern part, reportedly drawing about 3000. AP reports the demonstrators shouting “We don't need Islamic deception!” and “We don't want Islamic courts, we want peace!” There was a competing rally in support of the ICU. At that rally, Sheikh Sharif Ahmed is quoted as saying "Until we get the Islamic state, we will continue with the Islamic struggle in Somalia," to a crowd of about 500.[9]

On 14 June 2006, following a stand-off that lasted for approximately eight days, the ICU reportedly attacked the remaining ARPCT forces in Jowhar, routing them and seizing the town. Ali Mohamed Gedi has since then requested peacekeeping forces from the African Union, and neighboring states such as Kenya have imposed sanctions on the fleeing warlords, barring them entry into their lands.[11]

Michael Zorick (the U.S. State Department's political officer for Somalia), who had been stationed in Nairobi, was reassigned to Chad after he sent a cable to Washington criticizing Washington's policy of paying Somali warlords. The Times stated, "The American activities in Somalia have been approved by top officials in Washington and were reaffirmed during a National Security Council meeting about Somalia in March."[12]