Dear Ahmed,
this looks like the same problem that has been reported earlier by Mark Grier and Emma Strawderman.
I am afraid I have not been able to find an explanation for it. Mark kindly shared his data with me, but despite running eddy on it on all our GPU nodes I was not able to reproduce the problem.
Best regards Jesper
> On 26 Jun 2019, at 11:44, Ahmed Salih <[log in to unmask]> wrote:
>
> Dear all,
> I wanted to post my question, but I could not as I am not from UK institutions.
> I have a problem with eddy_cuda. when I run it, it is terminated and tell me the message below.
>
> ...................Allocated GPU # 0...................
> Segmentation violation, Address not mapped, Offending address = 0x2a429000
> eddy_cuda9.1 EDDY::CudaVolume::common_assignment_from_newimage_vol(NEWIMAGE::volume<float> const&, bool) [0x6ab912]
> eddy_cuda9.1() [0x686088]
> eddy_cuda9.1 EDDY::EddyInternalGpuUtils::detect_outliers(EDDY::EddyCommandLineOptions const&, EDDY::ScanType, std::shared_ptr<EDDY::DWIPredictionMaker>, NEWIMAGE::volume<float> const&, EDDY::ECScanManager const&, EDDY::ReplacementManager&, EDDY::DiffStatsVector&) [0x68d26c]
> eddy_cuda9.1 EDDY::EddyGpuUtils::DetectOutliers(EDDY::EddyCommandLineOptions const&, EDDY::ScanType, std::shared_ptr<EDDY::DWIPredictionMaker>, NEWIMAGE::volume<float> const&, EDDY::ECScanManager const&, EDDY::ReplacementManager&) [0x67b544]
> eddy_cuda9.1() [0x54e6ea]
> eddy_cuda9.1 EDDY::DoVolumeToVolumeRegistration(EDDY::EddyCommandLineOptions const&, EDDY::ECScanManager&) [0x54f607]
> eddy_cuda9.1 main [0x522e14]
> /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main [0x7f97403bf09b]
> eddy_cuda9.1() [0x547664]
>
> What is wrong?? how to fix it?
> Thanks in advance
>
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