Dear all,
I am confused in handeling with maskers in blastplus:
I have fasta seq. and want to run blast with a low complexity masker like
dustmasker:
$fac = Bio::Tools::Run::StandAloneBlastPlus->new(
-db_name => 'my_masked_db',
-db_data => 'myseqs.fas',
-masker => 'dustmasker',
-mask_data => 'maskseqs.fas',
-create => 1);
Is myseqs.fas the same as maskseqs.fas??? I don't want to create a
maskfile , I only will run blast with a masked file??