Favrot, S.D., B.C. Jonasson, and J.T. Peterson. Fall and Winter Microhabitat Use and Suitability for Spring Chinook Salmon Parr in a Pacific Northwest River, USA. Transactions of the American Fisheries Society

Wagner, T. J.B. Whittier, J.T. DeWeber, S.R. Midway, and C.P. Paukert. 2017. Annual changes in seasonal river water temperatures in the eastern and western United States. Water 9(2), 90; doi:10.3390/w9020090

Peterson, J.T. and C.P. Shea. 2015. An evaluation of the relations between flow regime components, stream characteristics, and species traits and meta-demographic rates of warmwater streams fishes: Implications for aquatic resource management. River Research and Applications 31: 1227–1241
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Peterson, J.T., P.D. Scheerer, S. Clements. 2015. An evaluation of the efficiency of minnow traps for estimating the abundance of minnows in desert spring systems. North American Journal of Fisheries Management. 35: 491-502.

Meador, J.M. and J.T. Peterson. 2011. An Evaluation of the Factors Influencing Freshwater Mussel Sampling and Demographics in a Large Lowland River. Journal of the North American Benthological Society 30(2):507-521

Dennard, S., J. T. Peterson, and E. S. Hawthorne. 2009. The Life History and Ecology of Cambarus halli, an Endemic Crayfish of the Tallapoosa River Basin, Georgia. Southeastern Naturalist 8:479-494.

Peterson, J. T., C. R. Jackson, C. P. Shea, and G. Li. The development and evaluation of a stream channel classification for estimating the response of fishes to changing streamflow. Transactions of the American Fisheries Society
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Ricca, M. A., A. K. Miles and R. G. Anthony. 2008. Sources of Organochlorine Contaminants and Mercury in Seabirds from the Aleutian Archipelago of Alaska: Inferences for Spatial and Trophic Variation. Science of the Total Environment 10:1-16.

Ruiz, J., and J. T. Peterson. An Evaluation of the Relative Influence of Spatial, Statistical, and Biological Factors on the Accuracy of Stream Fish Species Presence Models. Transactions of the American Fisheries Society 136:1640-1653.

Shea, C. P., and J. T. Peterson. An evaluation of the relative influence of habitat complexity and habitat stability on fish assemblage structure in unregulated and regulated reaches of a large southeastern warmwater stream. Transactions of the American Fisheries Society 136:943?958.

Davis, M. W., and C. B. Schreck. 2005. Responses by Pacific halibut to air exposure: Lack of correspondence among plasma constituents and mortality. Transactions of the American Fisheries Society. 134:991-998.

Anthony, R. G., and C. J. Zabel. 2003. Synopsis and future perspective. In Zabel, C. J. and R. G. Anthony (eds. ). Mammal Community Dynamics: Management and Conservation in the Coniferous Forests of Western North America. Cambridge University Press, New York NY.

Anthony, R. G., M. A. O'Connell, M. L. Pollock, and J. Hallett. 2003. Assoications of mammals with riparian ecosystems. In Zabel, C. J., and R. G. Anthony (eds. ). Mammal Mammal Community Dynamics: Management and Conservation in the Coniferous Forests of Western North America. Cambridge University Press, New York NY.

Zabel, C. J., and R. G. Anthony (eds. ). 2003. Mammal Community Dynamics: Management and Conservation in the Coniferous Forests of Western North America. Cambridge University Press, New York NY.

Zabel, C. J., and R. G. Anthony. 2003. Introduction and historical perspective. In Zabel, C. J. and R. G. Anthony (eds. ). Mammal Community Dynamics: Management and Conservation in the Coniferous Forests of Western North America. Cambridge University Press, New York NY.

Peterson, J. T., J. Dunham, P. Howell, S. Bonar, R. Thurow. 2002. Protocol for determining bull trout presence. Western Division of the American Fisheries Society. American Fisheries Society, Bethesda, Maryland. (This is a peer-refereed special publication of the Western Division of the American Fisheries Society).

Weigel, D. E., J. T. Peterson, and P. Spruell. 2002. A probabilistic model to detect introgression between westslope cutthroat trout and rainbow trout based on phenotypic characteristics. Transactions of the American Fisheries Society

Bayley, P. B., and J. T. Peterson. 2001. Species presence for zero observations: an approach and an application to estimate probability of occurrence of fish species and species richness. Transactions of the American Fisheries Society. 130: 620-633.

Maule, A. G., and C. B. Schreck. 1991. Stress and cortisol treatment changed affinity and number of glucocorticoid receptors in leukocytes and gill of coho salmon. General and Comparative Endocrinology 84:83-93.

Maule, A. G., C. B. Schreck, and S. L. Kaattari. 1987. Changes in the immune system of coho salmon (Oncorhynchus kisutch) during the parr-smolt transformation and after implantation of cortisol. Canadian Journal Fisheries and Aquatic Sciences 44:161-166.

Schreck, C. B. 1980. Potential impact of alterations in streamflow and water quality on fish and macroinvertebrates in the Upper Colorado River Basin: a discussion. Pages 155-162. In: W. O. Spofford Jr., A. L. Parker, and A. V. Kneese (Editors). The impact of energy development on the waters, fish, and wildlife in the Upper Colorado River Basin. Resources for the Future, Washington, DC. Vol. 2(R-18).

Schreck, C. B., and R. J. Behnke. 1971. Trouts of the Upper Kern River Basin California, with reference to systematics and evolution of western North American Salmo. Journal Fisheries Research Board of Canada 28:987-998.