Oryza sativa Japonica Group vs Triticum turgidum LastZ Results

Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Triticum turgidum (Triticum turgidum subsp. durum, Svevo.v1) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release . Oryza sativa Japonica Group was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 671,091

Genome coverage (bp)

Coding exon coverage (bp)

Oryza sativa Japonica Group

Uncovered: 290,020,848 out of 375,049,285Covered: 85,028,437 out of 375,049,285

Uncovered: 3,152,204 out of 34,424,450Matches: 24,155,722 out of 34,424,450Mismatches: 6,235,839 out of 34,424,450Insertions: 880,685 out of 34,424,450

Triticum turgidum subsp. durum

Uncovered: 10,182,497,900 out of 10,463,058,104Covered: 280,560,204 out of 10,463,058,104

Uncovered: 8,310,617 out of 88,577,667Matches: 61,802,295 out of 88,577,667Mismatches: 16,600,913 out of 88,577,667Insertions: 1,863,842 out of 88,577,667