PHILADELPHIA – A new appreciation for the interplay between two cell nucleus proteins that lead both intertwined and separate lives is helping researchers better understand fatty liver disease, according to a new study by researchers at the Perelman School of Medicine at the University of Pennsylvania. They published their findings this month in Genes & Development.

The liver normally makes and stores fat, which is required in moderation for normal body function. However, excess fat can cause major liver damage. In fact, fatty liver is a leading cause of liver failure in the United States and is often brought on by obesity and diabetes.

This loss of HNF6 affects another regulatory protein in the nucleus called Rev-erb-alpha, which also lifts the brakes off the production of fats, thereby also leading to a liver full of fat-filled cells. "When we took HFN6 out the liver, Rev-erb-alpha didn't know how to get to many of the places that it usually goes to in the liver cell genome," Lazar said.

Many of these lipid-producing genes are targets of Rev-erb-alpha, which plays a central role in coupling metabolism to the circadian clock, and binding of Rev-erb-alpha at these sites was lost when HNF6 was made inactive in liver cells. Normally, HNF6 delivers Rev-erb-alpha to parts of the genome it doesn't find on its own. If HNF6 is gone, Rev-erb-alpha's gene inactivation function is turned off – essentially suppressing a repressor. In this way HNF6 and Rev-erb together regulate aspects of liver lipid metabolism, but they also each independently affect other sets of genes in the liver and other tissues.

Lazar likens this control of normal liver physiology over a 24-hour cycle to the building game Jenga. "We are still trying to figure out which blocks are needed and which ones are not needed to keep the tower, or healthy liver, standing, as it were," he said. "If we take out the 'blocks' Rev-erb-alpha or HNF6 from the liver 'tower,' what happens? What this study tells us is that these two blocks are co-dependent in some situations."

Rev-erb-alpha governs the daily cycle of many genes that play a role in maintaining normal metabolic cycles in many tissues. An integrated view of normal metabolism is important to be able to see what happens during abnormal metabolism in order to know how to maintain healthy pathways and at the same time how to fix the ones that have gone awry.