Color Scheme

I have recently purchased the Prime theme for WordPress and when I go to customize the color, it only changes half of the icons and buttons. Also, the main menu color does not change, it remains the default color. Can you tell me how to change the color for the entire site (icons, buttons and menu highlights)?

Also, can you tell me how to get a larger logo in the upper left hand corner of the prime theme?

Thank you,
Molly

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