onepatchcorr(1) General Commands Manual onepatchcorr(1)
NAME
onepatchcorr - Correlate a patch from two volumes at one position
SYNOPSIS
onepatchcorr xsize ysize zsize xcen ycen zcen filea fileb out-
put_file
DESCRIPTION
onepatchcorr is a C-shell script to determine the 3-D displacement
between a single subset or patch extracted from two image volumes in
filea and fileb. It extracts the patch from each of the two volumes
using tapervoledge. It then uses clip to do 3-D cross-correlation
between the patches and determines the displacement of the patch in
fileb relative to the patch in filea. It writes a single line to the
output file giving the displacement between the two files in X, Y, and
Z.
ARGUMENTS
The size of the patch in X, Y, and Z is set by the arguments xsize,
ysize, and zsize.
The location of the center of the patch is given by the index coordi-
nates xcen, ycen, and zcen.
AUTHOR
David Mastronarde <mast at colorado dot edu>
SEEALSOtapervoledge, clip
IMOD 4.9.10 onepatchcorr(1)