Oryza sativa Japonica Group vs Oryza rufipogon LastZ Results

Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Oryza rufipogon (Oryza rufipogon, OR_W1943) were aligned using the LastZ alignment algorithm (LastZ)
in Ensembl Plants release 75. Oryza sativa Japonica Group was used as the reference species. After running LastZ, the raw LastZ alignment blocks
are chained according to their location in both genomes. During the final netting process, the best
sub-chain is chosen in each region on the reference species.

Results

Number of alignment blocks: 103,093

Genome coverage (bp)

Coding exon coverage (bp)

Oryza sativa Japonica Group

Uncovered: 70,757,579 out of 373,245,519Covered: 302,487,940 out of 373,245,519

Uncovered: 337,005 out of 44,520,596Matches: 43,620,233 out of 44,520,596Mismatches: 445,769 out of 44,520,596Insertions: 117,589 out of 44,520,596

Oryza rufipogon

Uncovered: 51,237,990 out of 338,040,714Covered: 286,802,724 out of 338,040,714

Uncovered: 1,152,224 out of 42,764,129Matches: 41,374,852 out of 42,764,129Mismatches: 185,533 out of 42,764,129Insertions: 51,520 out of 42,764,129