Alternatively, you can generate a set of assignments as translations of existing assignments. To do so, you need to make sure that you fill in the Save as user field just above. You should use something like RossO (leave out the master:). When you look at the assignments (and decide which to actually install), they will be made available under that name (but, when you access them, you will normally be using something like master:RossO)

Searching for Interesting Genes

Process Saved Assignments Sets

Here you should include the master:. Thus use something like master:RossO

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Locate clustered genes not in subsystems

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Align Sequences

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Locate PEGs in Subsystems

If you wish to locate PEGs in subsystems, you have two approaches supported. You can
give a FIG id, and you will get a list of all homologs in the designated genome that occur in subsystems.
Alternatively, you can specify a functional role, and all PEGs in the genome that match that role will be shown.
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Genome: Search: :

Compare Metabolic Reconstructions

If you wish to compare the reconstructions for two distinct genomes, use this tool.
You should specify two genomes, or a P1K server output directory (as genome1) and a second genome (which
must be a valid genome ID that exists in this SEED). You can ask for functional roles/subsystems that the
genomes have in common, those that exist in genome1 only, or those that exist in only genome2.
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Genome1:

Genome2: :

Compare Genomes

If you wish to compare the contents of several genomes, you can use this tool.
Choose a set of genomes (at least two).