Function Annotation for Pseudoknot Using Structure Similarity
Found in:
IEEE/ACM Transactions on Computational Biology and Bioinformatics
By Qingfeng Chen,Yi-Ping Phoebe Chen
Issue Date:November 2011
pp. 1535-1544
Many raw biological sequence data have been generated by the human genome project and related efforts. The understanding of structural information encoded by biological sequences is important to acquire knowledge of their biochemical functions but remains ...

Discovery of Structural and Functional Features in RNA Pseudoknots
Found in:
IEEE Transactions on Knowledge and Data Engineering
By Qingfeng Chen, Yi-Ping Phoebe Chen
Issue Date:July 2009
pp. 974-984
An RNA pseudoknot consists of nonnested double-stranded stems connected by single-stranded loops. There is increasing recognition that RNA pseudoknots are one of the most prevalent RNA structures and fulfill a diverse set of biological roles within cells, ...

A Framework for Merging Inconsistent Beliefs in Security Protocol Analysis
Found in:
Data Engineering Issues in E-Commerce, International Workshop on
By Qingfeng Chen, Yi-Ping Phoebe Chen, Chengqi Zhang, Shichao Zhang
Issue Date:April 2005
pp. 119-124
<p>This paper proposes a framework for merging inconsistent beliefs in the analysis of security protocols. The merge application is a procedure of computing the inferred beliefs of message sources and resolving the conflicts among the sources. Some s...

Mining Featured Patterns of MiRNA Interaction Based on Sequence and Structure Similarity
Found in:
IEEE/ACM Transactions on Computational Biology and Bioinformatics
By Qingfeng Chen,Wei Lan,Jianxin Wang
Issue Date:March 2013
pp. 415-422
MicroRNA (miRNA) is an endogenous small noncoding RNA that plays an important role in gene expression through the post-transcriptional gene regulation pathways. There are many literature works focusing on predicting miRNA targets and exploring gene regulat...

Function Annotation for Pseudoknot Using Structure Similarity
Found in:
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
By Qingfeng Chen, Yi-Ping Phoebe Chen, Yi-Ping Phoebe Chen
Issue Date:November 2011
pp. 1535-1544
Many raw biological sequence data have been generated by the human genome project and related efforts. The understanding of structural information encoded by biological sequences is important to acquire knowledge of their biochemical functions but remains ...

Mining Featured Patterns of MiRNA Interaction Based on Sequence and Structure Similarity
Found in:
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
By Jianxin Wang, Qingfeng Chen, Wei Lan
Issue Date:March 2013
pp. 415-422
MicroRNA (miRNA) is an endogenous small noncoding RNA that plays an important role in gene expression through the post-transcriptional gene regulation pathways. There are many literature works focusing on predicting miRNA targets and exploring gene regulat...