Sean Megason (http://megason.med.harvard.edu/) talks about the challenges and caveats of multiscale imaging, visualisation and analysis and highlights some of the tools that are used for processing and analysis of in toto imaging such as GoFigure2 (http://www.gofigure2.org/) and ACME...

Keywords: Anatomy Physiology and Atlases

Resource type: Video

Developmental Anatomyhttps://bivi.co/presentation/developmental-anatomyhttps://tess.elixir-europe.org/materials/developmental-anatomySean Megason (http://megason.med.harvard.edu/) talks about the challenges and caveats of multiscale imaging, visualisation and analysis and highlights some of the tools that are used for processing and analysis of in toto imaging such as GoFigure2 (http://www.gofigure2.org/) and ACME (https://wiki.med.harvard.edu/SysBio/Megason/ACME). This video was filmed and distributed with permission under a Creative Commons license.
Created at: VIZBI 2013.Anatomy Physiology and Atlases2017-01-31

Daniel Haehn talks about visualising medical and scientific data (such as MRI and CT scans, microscopy scan stacks etc.) in 3D and introduces some of the open-source tools available.This video was filmed and distributed with permission under a Creative Common license.
Created at: VIZBI 2013.

Keywords: Anatomy Physiology and Atlases

Resource type: Video

Physiology &amp; Functionhttps://bivi.co/presentation/physiology-functionhttps://tess.elixir-europe.org/materials/physiology-amp-functionDaniel Haehn talks about visualising medical and scientific data (such as MRI and CT scans, microscopy scan stacks etc.) in 3D and introduces some of the open-source tools available.This video was filmed and distributed with permission under a Creative Common license.
Created at: VIZBI 2013.Anatomy Physiology and Atlases2017-01-31

Mark Henkelman gives an introduction on the use of 3D imaging in neuroanatomy to explore consequences of genetic alterations on anatomical structures and infer function.This video was filmed and distributed with permission under a Creative Commons license.
Created at: VIZBI 2013.

Keywords: Anatomy Physiology and Atlases

Resource type: Video

Genes into Geometryhttps://bivi.co/presentation/genes-geometryhttps://tess.elixir-europe.org/materials/genes-into-geometryMark Henkelman gives an introduction on the use of 3D imaging in neuroanatomy to explore consequences of genetic alterations on anatomical structures and infer function.This video was filmed and distributed with permission under a Creative Commons license.
Created at: VIZBI 2013.Anatomy Physiology and Atlases2017-01-31

Bernard de Bono presents a talk on using ApiNATOMY for the visualisation of multiscale physiology circuitboards at 3rd BiVi Annual Meeting in April 2017.
Created at: 3rd BiVi Annual Meeting (2017).

Keywords: Anatomy Physiology and Atlases

Resource type: Video

ApiNATOMY visualisation of multiscale physiology circuitboardshttps://bivi.co/presentation/apinatomy-visualisation-multiscale-physiology-circuitboardshttps://tess.elixir-europe.org/materials/apinatomy-visualisation-of-multiscale-physiology-circuitboardsBernard de Bono presents a talk on using ApiNATOMY for the visualisation of multiscale physiology circuitboards at 3rd BiVi Annual Meeting in April 2017.
Created at: 3rd BiVi Annual Meeting (2017).Dr. Bernard de BonoAnatomy Physiology and Atlases2017-05-12

A 3rd BiVi 2017 Keynote Presentation by Bang Wong, Broad Institute of MIT &amp; Harvard and Department of Art as Applied to Medicine, Johns Hopkins University School of MedicineChaired by: Geoff BartonThe data generated by the biomedical research community hold tremendous potential to inform our...

Art and Science: A partnership catalyzing discovery in biomedicinehttps://bivi.co/presentation/art-and-science-partnership-catalyzing-discovery-biomedicinehttps://tess.elixir-europe.org/materials/art-and-science-a-partnership-catalyzing-discovery-in-biomedicineA 3rd BiVi 2017 Keynote Presentation by Bang Wong, Broad Institute of MIT &amp; Harvard and Department of Art as Applied to Medicine, Johns Hopkins University School of MedicineChaired by: Geoff BartonThe data generated by the biomedical research community hold tremendous potential to inform our understanding and treatment of disease. The challenge is to ensure that technical and non-technical researchers can access, use and learn from this wealth of data and analytical resources. Bang will present examples of solutions developed at the Broad Institute that draw on art and design to enable scientific discovery.Bang Wong is the creative director of the Broad Institute of MIT &amp; Harvard and an adjunct assistant professor in the Department of Art as Applied to Medicine at the Johns Hopkins University School of Medicine. His work focuses on the design and development of computation-visualization tools to meet the analytical challenges of research data. He leads the data visualization initiative at the Broad and is the founding author of Points of View published by Nature Methods, a series of articles that focus on the fundamental aspects of data presentation in science.
Created at: 3rd BiVi Annual Meeting (2017).Bang WongPhylogeneticsPathway or networkAnatomy Physiology and Atlases, Cells and Organisms, Genome, Molecular, Pathway, Phylogenetics, Populations, Communication, Information visualisation2017-05-12

Lecture by professor Tom Freeman.
Filmed during a half-day training course held at The Roslin Institute, January 2015, aimed at training biologists with little or no experience of gene expression analysis the basics. Features 15 short films covering the background to data generation through to...

Keywords: Gene expression analysis, Roslin Institute

An Introduction to BioLayout Express3Dhttps://www.youtube.com/playlist?list=PLbyRmcun-givYQ9_dul96W98tC3y6_2sthttps://tess.elixir-europe.org/materials/an-introduction-to-biolayout-express3dLecture by professor Tom Freeman.
Filmed during a half-day training course held at The Roslin Institute, January 2015, aimed at training biologists with little or no experience of gene expression analysis the basics. Features 15 short films covering the background to data generation through to deriving meaning using network analysis.
- Course aims: the basics of expression data analysis introduction to graph-based analysis introduction to BioLayout Express3D data import navigation of graphs clustering graph analysis data exportTom FreemanGene expression analysis, Roslin Institute

Training session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, April 2015.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.

Keywords: SAS, Roslin Institute

SAS Introductionhttps://www.youtube.com/playlist?list=PLbyRmcun-giszUmMQLCMIZoHCV1fuCdphhttps://tess.elixir-europe.org/materials/sas-introductionTraining session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, April 2015.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.Helen BrownSAS, Roslin Institute

Training session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, December 2015.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.

Keywords: Summarising data, Roslin Institute

Summarising Datahttps://www.youtube.com/playlist?list=PLbyRmcun-gittCJyqswN_8gSPc9XkVLgehttps://tess.elixir-europe.org/materials/summarising-dataTraining session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, December 2015.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.Helen BrownSummarising data, Roslin Institute

Training session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, December 2015.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.

Keywords: Statistical tests, Roslin Institute

Basic Statistical Testshttps://www.youtube.com/playlist?list=PLbyRmcun-giu-881XGH-F5baTmqiKrv-zhttps://tess.elixir-europe.org/materials/basic-statistical-testsTraining session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, December 2015.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.Helen BrownStatistical tests, Roslin Institute

Training session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, January 2016.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.

Keywords: Experimental design, Roslin Institute

Introduction to Experimental Designhttps://www.youtube.com/playlist?list=PLbyRmcun-gis3nonV8IeVFRYjlpvpCufmhttps://tess.elixir-europe.org/materials/introduction-to-experimental-designTraining session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, January 2016.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.Helen BrownExperimental design, Roslin Institute

Training session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, January 2016.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.
A spreadsheet...

Keywords: Sample size, Roslin Institute

Introduction to Sample Size Calculationhttps://www.youtube.com/playlist?list=PLbyRmcun-givegZIS4FAA6ZHDuMYnUNJlhttps://tess.elixir-europe.org/materials/introduction-to-sample-size-calculationTraining session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, January 2016.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.
A spreadsheet to carry out the calculations described in the presentation may be copied here: http://datashare.is.ed.ac.uk/handle/10283/1996Helen BrownSample size, Roslin Institute

Training session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, December 2015.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.

Keywords: Statistical modelling, Roslin Institute

Introduction to Statistical Modellinghttps://www.youtube.com/playlist?list=PLbyRmcun-givlS2DuKFcgWA3kcweQALujhttps://tess.elixir-europe.org/materials/introduction-to-statistical-modellingTraining session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, December 2015.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.Helen BrownStatistical modelling, Roslin Institute

Training session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, March 2016.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.

Keywords: Mixed models, Roslin Institute

Introduction to Mixed Modelshttps://www.youtube.com/playlist?list=PLbyRmcun-giuz5hW11nD64zeiJZSDV4aDhttps://tess.elixir-europe.org/materials/introduction-to-mixed-modelsTraining session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, March 2016.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.Helen BrownMixed models, Roslin Institute

Training session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, March 2016.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.

Keywords: Data analysis, Repeated measures, Roslin Institute

Introduction to Analysing Repeated Measures Datahttps://www.youtube.com/playlist?list=PLbyRmcun-gitPRwGoNRC4exkkQyR-8qjjhttps://tess.elixir-europe.org/materials/introduction-to-analysing-repeated-measures-dataTraining session with Dr Helen Brown, Senior Statistician, at The Roslin Institute, March 2016.
These training sessions were given to staff and research students at the Roslin Institute. The material is also used for the Animal Biosciences MSc course taught at the Institute.Helen BrownData analysis, Repeated measures, Roslin Institute