I came to know that It is adding 2 files in the binary table so that is creating a problem.

Basically the problem is that we're able to create a transform for this vendor MSI with wise package studio but when you run vendor MSI with the MST. It is failing with the below error.

Please find following exerpts from the LIME verbose log pertaining to the error:

MSI (s) (74!34) [12:08:59:317]: Product: AutoSys Remote Agent v4.5.1D for 64-bit Windows -- Error 1721. There is a problem with this Windows Installer package. A program required for this install to complete could not be run. Contact your support personnel or package vendor. Action: , location: WiseCustomCall, command: g2