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Worm

This section contains links to genome resources and databases for worms including the nematode, C. elegans.

Found 17 links

Displaying 15 links

A community-curated semantic wiki to coordinate the sequencing efforts of individual labs to collectively sequence 959 genomes spanning the phylum Nematoda. The main goal of the wiki is to track sequencing projects that have been proposed, are in progress, or have been completed.

The DIANA-microT web server predicts targets for miRNAs and provides functional information on the predicted miRNA:target gene interaction from various online biological resources. Updates enable the association of miRNAs to diseases through bibliographic analysis and connection to the UCSC genome browser. Updates include sophisticated workflows.

GeneMANIA is web interface for generating hypotheses about gene function, analyzing gene lists and prioritizing genes for functional assays. Users input a query list for extension and weighting with functionally similar genes. Six organisms are supported.

Database of protein orthologs that interact (interologs) and proteins with conserved regulatory relationships across species (regulogs). Contains data for C. elegans, Drosophila, Arabidopsis, and Yeast.

Inferring the functions of longevity genes with modular subnetwork biomarkers of Caenorhabditis elegans aging. A method where the biomarkers are networks of genes selected based on age-dependent activity and a graph-theoretic property called modularity. These modular biomarkers are applied to assign novel aging-related functions to poorly characterized longevity genes.

NetAligner is a network alignment tool that allows the identification of conserved protein complexes and pathways across organisms. Predictions to fill missing interaction networks is based on likely conserved interactions based on evolutionary distance. Seven model organisms are included.