Tree Position

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19)

POS-REF-ALT (hg38)

Blocks

Names

Region

McDonald BED

combBED

STR

FGCS4C39

8193510-G-C

8325469-G-C

FGC12938

Y

Y

+

9156869-G-A

9319260-G-A

FGC12940

+

18969348-T-G

16857468-T-G

FGC12946

Y

+

13313721-C-G

11158045-C-G

FGC12942

+

13652878-C-A

11497202-C-A

FGC12943

+

21655482-T-C

19493596-T-C

FGC12947

Y

Y

+

23274603-T-A

21112717-T-A

FGC12949

Y

Y

+

17734836-A-G

15622956-A-G

FGC12945

Y

+

8185668-CT-C

8317627-CT-C

FGC12951

+

14436676-C-T

12315949-C-T

FGC12944

Y

+

5767662-G-T

5899621-G-T

FGC12937

*

8214408-G-A

8346367-G-A

FGC12939

Y

Y

*

13241794-G-A

11086118-G-A

FGC12941

*

7632434-T-C

7764393-T-C

**

4395387-T-C

4527346-T-C

**

19029607-A-T

16917727-A-T

**

7671307-TACAC-T

7803266-TACAC-T

17×AC

**

17928143-T-A

15816263-T-A

**

5186392-G-A

5318351-G-A

**

15924414-G-T

13812534-G-T

**

14343140-T-A

12222435-T-A

**

22516115-G-A

20354229-G-A

FGC60032

**

7340204-A-T

7472163-A-T

**

9075188-CTTTTTTT-C

9237579-CTTTTTTT-C

20×T

**

7577693-T-C

7709652-T-C

**

13473447-C-A

11317771-C-A

**

20354926-T-C

18193040-T-C

P5_Dst

**

7968397-G-A

8100356-G-A

**

58862644-C-G

56728227-G-C

**

15671815-G-A

13559935-G-A

**

58893222-GTCCATTCCGTTCGAT-G

56697615-GGGAATCGAACGGAAT-G

**

13329179-G-T

11173503-G-T

**

13383436-A-C

11227760-A-C

**

22789552-G-T

20627666-G-T

**

13251630-T-C

11095954-T-C

**

4474309-G-T

4606268-G-T

**

13492264-C-A

11336588-C-A

**

13492247-A-T

11336571-A-T

**

14410374-A-G

12289671-A-G

**

8135898-G-A

8267857-G-A

**

27581651-C-T

25435504-C-T

P1_Y2

***

27702244-A-G

25556097-A-G

P1_Y2

***

27981718-C-A

25835571-C-A

P1_Y2

***

28082479-A-G

25936332-A-G

P1_Y2

***

27637566-C-G

25491419-C-G

P1_Y2

***

7484034-G-GA

7615993-G-GA

IR1_L

11×A

***

27581650-C-T

25435503-C-T

P1_Y2

***

27578917-G-A

25432770-G-A

P1_Y2

***

27578910-G-A

25432763-G-A

P1_Y2

***

27476544-C-G

25330397-C-G

P1_Y2

***

27476543-A-G

25330396-A-G

P1_Y2

***

27476524-T-A

25330377-T-A

P1_Y2

***

27409182-C-T

25263035-C-T

P1_g3

***

27409181-A-T

25263034-A-T

P1_g3

***

27370023-T-C

25223876-T-C

P1_g3

***

27369980-C-T

25223833-C-T

P1_g3

***

27369979-A-C

25223832-A-C

P1_g3

***

27369962-T-G

25223815-T-G

P1_g3

***

27274787-T-G

25128640-T-G

P1_g3

***

27265904-G-C

25119757-G-C

P1_g3

***

27409185-G-T

25263038-G-T

P1_g3

***

28751348-G-C

26605201-G-C

***

28082481-A-G

25936334-A-G

P1_Y2

***

58832557-T-C

56758314-A-G

***

58823533-T-C

56767338-A-G

***

58824622-T-A

56766249-A-T

***

58826823-A-T

56764048-T-A

***

58826829-C-T

56764042-G-A

***

58826831-A-T

56764040-T-A

***

58832554-T-A

56758317-A-T

***

58832563-C-T

56758308-G-A

***

58823033-T-A

56767838-A-T

***

58832569-A-G

56758302-T-C

***

58832575-T-A

56758296-A-T

***

58832602-C-T

56758269-G-A

***

58832604-A-T

56758267-T-A

***

58832605-T-G

56758266-A-C

***

58833124-A-G

56757747-T-C

***

58823035-C-T

56767836-G-A

***

58823031-C-A

56767840-G-T

***

28082482-A-G

25936335-A-G

P1_Y2

***

28751349-C-A

26605202-C-A

***

28082507-T-A

25936360-T-A

P1_Y2

***

28082508-G-A

25936361-G-A

P1_Y2

***

28082509-T-A

25936362-T-A

P1_Y2

***

28213287-A-G

26067140-A-G

P1_b4

***

28583163-T-C

26437016-T-C

***

27235514-T-G

25089367-T-G

P1_g3

***

58819791-T-G

56771080-A-C

***

58823026-C-G

56767845-G-C

***

58820472-C-T

56770399-G-A

***

58820475-T-A

56770396-A-T

***

58820585-G-C

56770286-C-G

***

58823014-T-G

56767857-A-C

***

58823018-A-G

56767853-T-C

***

58823022-C-T

56767849-G-A

***

58823024-C-T

56767847-G-A

***

27235515-T-A

25089368-T-A

P1_g3

***

26446540-A-G

24300393-A-G

P1_Y1

***

27235513-C-A

25089366-C-A

P1_g3

***

22491790-C-T

20329904-C-T

DYZ19

***

22367094-A-T

20205208-A-T

DYZ19

***

22369637-G-T

20207751-G-T

DYZ19

***

22421924-A-G

20260038-A-G

DYZ19

***

22424201-A-T

20262315-A-T

DYZ19

***

22424207-G-T

20262321-G-T

DYZ19

***

22450500-G-C

20288614-G-C

DYZ19

***

22450507-T-G

20288621-T-G

DYZ19

***

22495786-C-G

20333900-C-G

DYZ19

***

22365801-T-G

20203915-T-G

DYZ19

***

22495822-G-A

20333936-G-A

DYZ19

***

22496072-G-A

20334186-G-A

DYZ19

***

22499753-C-T

20337867-C-T

DYZ19

***

22499816-A-T

20337930-A-T

DYZ19

***

22499817-C-T

20337931-C-T

DYZ19

***

22499843-A-G

20337957-A-G

DYZ19

***

22503330-A-G

20341444-A-G

DYZ19

***

22366813-C-T

20204927-C-T

DYZ19

***

22365604-T-C

20203718-T-C

DYZ19

***

22984360-T-A

20822474-T-A

***

22337305-G-T

20175419-G-T

DYZ19

***

22276110-A-G

20114224-A-G

DYZ19

***

22282156-T-C

20120270-T-C

DYZ19

***

22289787-T-G

20127901-T-G

DYZ19

***

22308389-T-A

20146503-T-A

DYZ19

***

22308397-G-T

20146511-G-T

DYZ19

***

22308469-G-C

20146583-G-C

DYZ19

***

22322618-G-A

20160732-G-A

DYZ19

***

22337327-G-T

20175441-G-T

DYZ19

***

22364607-C-A

20202721-C-A

DYZ19

***

22341243-A-T

20179357-A-T

DYZ19

***

22342899-A-G

20181013-A-G

DYZ19

***

22344146-A-C

20182260-A-C

DYZ19

***

22344147-T-C

20182261-T-C

DYZ19

***

22344149-G-A

20182263-G-A

YFS041871

DYZ19

***

22360537-T-A

20198651-T-A

DYZ19

***

22361069-C-A

20199183-C-A

DYZ19

***

22504674-G-C

20342788-G-C

DYZ19

***

22988241-A-G

20826355-A-G

***

27235508-T-A

25089361-T-A

P1_g3

***

26260540-T-G

24114393-T-G

P1_Y1

***

26039466-C-T

23893319-C-T

P1_Y1

***

26085236-C-T

23939089-C-T

P1_Y1

***

26093723-T-C

23947576-T-C

P1_Y1

***

26093735-G-A

23947588-G-A

P1_Y1

***

26093736-G-T

23947589-G-T

P1_Y1

***

26093749-C-T

23947602-C-T

P1_Y1

***

26139671-C-A

23993524-C-A

P1_Y1

***

26260543-G-A

24114396-G-A

P1_Y1

***

26039451-T-A

23893304-T-A

P1_Y1

***

26446524-T-A

24300377-T-A

P1_Y1

***

58833136-G-T

56757735-C-A

***

26446798-C-T

24300651-C-T

P1_Y1

***

26923397-G-A

24777250-G-A

P1_r3

***

27054251-C-T

24908104-C-T

FGC60033

P1_r4

***

27235485-C-A

25089338-C-A

P1_g3

***

27235505-C-A

25089358-C-A

P1_g3

***

26039457-T-A

23893310-T-A

P1_Y1

***

26039437-C-G

23893290-C-G

P1_Y1

***

23205789-G-T

21043903-G-T

***

24260617-T-A

22114470-T-A

P3_b1

***

23228052-A-T

21066166-A-T

***

23228053-A-T

21066167-A-T

***

23516621-G-A

21354735-G-A

***

23518625-T-C

21356739-T-C

***

24147777-T-C

22001630-T-C

P3_b1

***

24260569-C-A

22114422-C-A

P3_b1

***

24260604-T-A

22114457-T-A

P3_b1

***

24260620-A-G

22114473-A-G

P3_b1

***

25593693-A-T

23447546-A-T

P1_gr1

***

24583079-C-A

22436932-C-A

P3_t2

***

24583080-C-A

22436933-C-A

P3_t2

***

24583101-C-T

22436954-C-T

P3_t2

***

24862279-T-A

22716132-T-A

P3_b2

***

25268540-G-A

23122393-G-A

P2_r1

***

25505504-G-T

23359357-G-T

P1_gr1

***

25505516-C-T

23359369-C-T

P1_gr1

***

58833134-G-A

56757737-C-T

***

58843787-T-A

56747084-A-T

***

58833148-G-A

56757723-C-T

***

13606877-C-CAAAAAA

11451201-C-CAAAAAA

25×A

***

13424285-CCCAT-TCCAC

11268609-CCCAT-TCCAC

***

13467725-AA-CT

11312049-AA-CT

***

13471978-GACC-CACT

11316302-GACC-CACT

***

13476136-CAAGC-TAAGA

11320460-CAAGC-TAAGA

***

13476502-GGTTG-TGTTT

11320826-GGTTG-TGTTT

***

13478509-TT-GG

11322833-TT-GG

***

13487284-CACT-GACC

11331608-CACT-GACC

***

13701778-TGA-GGC

11546102-TGA-GGC

***

13254160-CTTT-TTTC

11098484-CTTT-TTTC

***

13723586-GGCAAG-TTAAAC

11567910-GGCAAG-TTAAAC

***

13723596-GG-AT

11567920-GG-AT

***

13740758-GAAGGAAATCA-G

11585082-GAAGGAAATCA-G

***

13811104-GAATGGAATGGAATGGAATGC-G

11690398-GAATGGAATGGAATGGAATGC-G

***

13838485-AGGAAT-A

11717779-AGGAAT-A

9×GGAAT

***

15263355-G-GTTAAAT

13151440-GTAAATT-TTAAATG

***

15947951-CTTTTTT-C

13836071-CTTTTTT-C

19×T

***

13374677-CAAAA-AAAAT

11219001-CAAAA-AAAAT

***

13250598-GT-TC

11094922-GT-TC

***

18230849-TT-GG

16118969-TT-GG

***

7076642-TAC-AAA

7208601-TAC-AAA

***

3474540-AACCA-CAACC

3606499-AACCA-CAACC

***

3561527-CT-TA

3693486-CT-TA

***

3902502-TAAAAATATAATACATTCAAATAGAA-T

4034461-TAAAAATATAATACATTCAAATAGAA-T

***

5107036-ACCAT-CCCAC

5238995-ACCAT-CCCAC

***

5227086-GC-AA

5359045-GC-AA

***

5308801-GAGAGAG-TATATAT

5440760-GAGAGAG-TATATAT

***

5365351-GTTTCC-CGATCT

5497310-GTTTCC-CGATCT

***

7125199-C-CAA

7257158-C-CAA

16×A

***

13138885-GTATTCCATT-ACATTATATC

10628371-GTATTCCATT-ACATTATATC

***

8065144-CCA-TCT

8197103-CCA-TCT

***

9301402-TA-AG

9463793-TA-AG

***

9303733-GAGGACG-CCGATCT

9466124-GAGGACG-CCGATCT

***

9936877-CACAAA-TGCAAT

10099268-CACAAA-TGCAAT

***

9952729-ATAGCCAGTT-TTTGCCAGGC

10115120-ATAGCCAGTT-TTTGCCAGGC

***

10004740-CA-C

10167131-CA-C

***

10019063-GGGTA-TGGTG

10181454-GGGTA-TGGTG

***

17298771-G-GA

15186891-G-GA

9×A

***

20326007-C-CTTTCTTTT

18164121-C-CTTTCTTTT

P5_Dst

29×T

***

13466543-CC-GG

11310867-CC-GG

***

58870710-CATTC-AATTT

56720157-GAATG-AAATT

***

58847034-TCACTCTAG-CCATTGCAT

56743829-CTAGAGTGA-ATGCAATGG

***

58847060-AATT-GATG

56743808-AATT-CATC

***

58847072-CTCT-TTCC

56743796-AGAG-GGAA

***

58847087-TTCA-AATC

56743781-TGAA-GATT

***

58847190-CATTCG-GATGCC

56743676-CGAATG-GGCATC

***

58848553-GTCATT-G

56742312-GAATGA-G

***

58870596-CACCCA-GATCTC

56720270-TGGGTG-GAGATC

***

58870720-GATTGCA-CC

56720145-TGCAATC-GG

***

58832563-CATTTCATTCGATTCC-TATTCCGTTCCAATCA

56758293-GGAATCGAATGAAATG-TGATTGGAACGGAATA

***

58889797-GTTTGATG-ATTAGATT

56701067-CATCAAAC-AATCTAAT

***

58898203-GCAC-CGAA

56692665-GTGC-TTCG

***

58907248-TTTATCA-CCGATCT

56683617-TGATAAA-AGATCGG

***

58908611-ATTCAAT-CTTACAC

56682254-ATTGAAT-GTGTAAG

***

58917661-NN-N

***

58995228-TAA-CAG

56849081-TAA-CAG

***

58917656-CN-C

***

58843776-GTA-TTT

56747093-TAC-AAA

***

58832554-TTTT-ATTC

56758314-AAAA-GAAT

***

21913467-TTGACA-CGATCT

19751581-TTGACA-CGATCT

***

22366801-TTTCGTGG-GTTAATGC

20204915-TTTCGTGG-GTTAATGC

DYZ19

***

21994005-GCA-G

19832119-GCA-G

***

22236553-ACTCTAGAC-TCACTGGAT

20074667-ACTCTAGAC-TCACTGGAT

DYZ19

***

22252915-TGGT-ATGA

20091029-TGGT-ATGA

DYZ19

***

22256980-ACTTA-TCTTG

20095094-ACTTA-TCTTG

DYZ19

***

22337261-TCTT-ACTA

20175375-TCTT-ACTA

DYZ19

***

22337345-GT-CA

20175459-GT-CA

DYZ19

***

22343913-TT-AC

20182027-TT-AC

DYZ19

***

24387101-TA-CC

22240954-TA-CC

***

58823348-ATTCA-GATC

56767519-TGAAT-GATC

***

25709386-G-GTTTCTT

23563239-G-GTTTCTT

P1_b3

31×T

***

28549327-GC-G

26403180-GC-G

***

28549330-AAAGGGAGGGCAGGGCC-A

26403183-AAAGGGAGGGCAGGGCC-A

***

28818194-G-GTGGAATGGAATGTAA

26672047-G-GTGGAATGGAATGTAA

5×TGGAA

***

58820649-TCA-CCG

56770220-TGA-CGG

***

58823046-CAATTCCA-GGATTACT

56767818-TGGAATTG-AGTAATCC

***

58823062-AATTC-GATTA

56767805-GAATT-TAATC

***

3358526-ACCAT-CCCA

3490485-ACCAT-CCCA

***

13467717-CTA-TTG

11312041-CTA-TTG

***

58833149-A-G

56757722-T-C

***

58857776-C-A

56733095-G-T

***

58856200-C-T

56734671-G-A

***

58857168-A-T

56733703-T-A

***

58857180-A-T

56733691-T-A

***

58857538-C-A

56733333-G-T

***

58857762-C-G

56733109-G-C

***

58857771-C-T

56733100-G-A

***

58857773-A-T

56733098-T-A

***

58857792-T-C

56733079-A-G

***

58851813-G-A

56739058-C-T

***

58863512-T-G

56727359-A-C

***

58870538-C-G

56720333-G-C

***

58870790-G-C

56720081-C-G

***

58872197-A-T

56718674-T-A

***

58872202-A-G

56718669-T-C

***

58872285-C-A

56718586-G-T

***

58875185-C-T

56715686-G-A

***

58854179-G-A

56736692-C-T

***

58851772-T-G

56739099-A-C

***

58876422-A-T

56714449-T-A

***

58843783-T-A

56747088-A-T

***

58841334-T-C

56749537-A-G

***

58841385-T-C

56749486-A-G

***

58841404-C-T

56749467-G-A

***

58843660-C-A

56747211-G-T

***

58843764-A-G

56747107-T-C

***

58843767-T-G

56747104-A-C

***

58843782-T-C

56747089-A-G

***

22252927-C-T

20091041-C-T

DYZ19

***

58847762-T-C

56743109-A-G

***

58845140-T-G

56745731-A-C

***

58846261-A-T

56744610-T-A

***

58846333-C-T

56744538-G-A

***

58846339-A-C

56744532-T-G

***

58847083-T-G

56743788-A-C

***

58847094-C-G

56743777-G-C

***

58847101-A-T

56743770-T-A

***

58876405-A-C

56714466-T-G

***

58876425-C-A

56714446-G-T

***

13460921-TACA-CACT

11305245-TACA-CACT

***

58912433-C-T

56678438-G-A

***

58890649-T-A

56700222-A-T

***

58898168-C-T

56692703-G-A

***

58898184-C-T

56692687-G-A

***

58907248-T-C

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58917656-CNN-C

***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.