Trajectory Inference

For trajectory inference on complex datasets, we offer several examples here. Get started here for the following result on hematopoiesis.

You can extend this to multi-resolution analyses of whole animals, such as here.

The PAGA method behind this is described here and can be cited using this doi. As a reference for simple pseudotime analyses, we provide the diffusion pseudotime analyses of [Haghverdi16]_ for two hematopoiesis datasets: here for [Paul15]_ and here for [Moignard15]_.