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So I’ve kinda figured it out since I’ve posted the question, here’s what I did.
My actual sales were $117.46 and the actual deposit was $114.23 so I split the transaction and the first category for sales I put $117.46 and the second category I went through and found “discounts and fees” and that makes the second category a negative amount which is where I would put the $3.23 credit card processing fee which makes the transaction balance.

Hey @trav2001 . Can you give me some further info here? Maybe a screenshot to show us what you're doing? The info that the rest of the thread on Discounts and Fees should apply here if you categorize the second half of your split transaction as such.