Bowtie2

Install

Prepare index file.

To do mapping by Bowtie2, the index file for the reference genome is necessary.
The file can be created by bowtie2-build command from the raw reference genome file [3].
But this time, just download the file from the Bowtie2 official web site [1].
Go to [1]. Then right side Indexes section "H. sapiens, UCSC hg19", click or copy the linked URL.

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