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We present Phantom, a fast, parallel, modular, and low-memory smoothed particle hydrodynamics and magnetohydrodynamics code developed over the last decade for astrophysical applications in three dimensions. The code has been developed with a focus on stellar, galactic, planetary, and high energy astrophysics, and has already been used widely for studies of accretion discs and turbulence, from the birth of planets to how black holes accrete. Here we describe and test the core algorithms as well as modules for magnetohydrodynamics, self-gravity, sink particles, dust–gas mixtures, H2 chemistry, physical viscosity, external forces including numerous galactic potentials, Lense–Thirring precession, Poynting–Robertson drag, and stochastic turbulent driving. Phantom is hereby made publicly available.

There is strong evidence that people born in winter and in spring have a small increased risk of schizophrenia. As this ‘season of birth’ effect underpins some of the most influential hypotheses concerning potentially modifiable risk exposures, it is important to exclude other possible explanations for the phenomenon.

Methods

Here we sought to determine whether the season of birth effect reflects gene-environment confounding rather than a pathogenic process indexing environmental exposure. We directly measured, in 136 538 participants from the UK Biobank (UKBB), the burdens of common schizophrenia risk alleles and of copy number variants known to increase the risk for the disorder, and tested whether these were correlated with a season of birth.

Results

Neither genetic measure was associated with season or month of birth within the UKBB sample.

Conclusions

As our study was highly powered to detect small effects, we conclude that the season of birth effect in schizophrenia reflects a true pathogenic effect of environmental exposure.

Objectives: Total intracranial volume (TICV) is an important control variable in brain–behavior research, yet its calculation has challenges. Manual TICV (Manual) is labor intensive, and automatic methods vary in reliability. To identify an accurate automatic approach we assessed the reliability of two FreeSurfer TICV metrics (eTIV and Brainmask) relative to manual TICV. We then assessed how these metrics alter associations between left entorhinal cortex (ERC) volume and story retention. Methods: Forty individuals with Parkinson’s disease (PD) and 40 non-PD peers completed a brain MRI and memory testing. Manual metrics were compared to FreeSurfer’s Brainmask (a skull strip mask with total volume of gray, white, and most cerebrospinal fluid) and eTIV (calculated using the transformation matrix into Talairach space). Volumes were compared with two-way interclass correlations and dice similarity indices. Associations between ERC volume and Wechsler Memory Scale-Third Edition Logical Memory retention were examined with and without correction using each TICV method. Results: Brainmask volumes were larger and eTIV volumes smaller than Manual. Both automated metrics correlated highly with Manual. All TICV metrics explained additional variance in the ERC-Memory relationship, although none were significant. Brainmask explained slightly more variance than other methods. Conclusions: Our findings suggest Brainmask is more reliable than eTIV for TICV correction in brain-behavioral research. (JINS, 2018, 24, 206–211)

The Protoplanetary Discussions conference—held in Edinburgh, UK, from 2016 March 7th–11th—included several open sessions led by participants. This paper reports on the discussions collectively concerned with the multi-physics modelling of protoplanetary discs, including the self-consistent calculation of gas and dust dynamics, radiative transfer, and chemistry. After a short introduction to each of these disciplines in isolation, we identify a series of burning questions and grand challenges associated with their continuing development and integration. We then discuss potential pathways towards solving these challenges, grouped by strategical, technical, and collaborative developments. This paper is not intended to be a review, but rather to motivate and direct future research and collaboration across typically distinct fields based on community-driven input, to encourage further progress in our understanding of circumstellar and protoplanetary discs.

To provide a framework for decision making around use of CP for endemic MRSA and VRE based on a summary of evidence related to use of CP, including impact on patients and patient care processes, and current practices in use of CP for MRSA and VRE in US hospitals.

DESIGN

A literature review, a survey of Society for Healthcare Epidemiology of America Research Network members on use of CP, and a detailed examination of the experience of a convenience sample of hospitals not using CP for MRSA or VRE.

PARTICIPANTS

Hospital epidemiologists and infection prevention experts.

RESULTS

No high quality data support or reject use of CP for endemic MRSA or VRE. Our survey found more than 90% of responding hospitals currently use CP for MRSA and VRE, but approximately 60% are interested in using CP in a different manner. More than 30 US hospitals do not use CP for control of endemic MRSA or VRE.

CONCLUSIONS

Higher quality research on the benefits and harms of CP in the control of endemic MRSA and VRE is needed. Until more definitive data are available, the use of CP for endemic MRSA or VRE in acute care hospitals should be guided by local needs and resources.

We use a WISE-2MASS-Pan-STARRS1 galaxy catalog to search for a supervoid in the direction of the Cosmic Microwave Background Cold Spot. We obtain photometric redshifts using our multicolor data set to create a tomographic map of the galaxy distribution. The radial density profile centred on the Cold Spot shows a large low density region, extending over 10's of degrees. Motivated by previous Cosmic Microwave Background results, we test for underdensities within two angular radii, 5°, and 15°. Our data, combined with an earlier measurement by Granett et al. 2010, are consistent with a large Rvoid=(192 ± 15)h−1 Mpc (2σ) supervoid with δ ≃ −0.13 ± 0.03 centered at z=0.22 ± 0.01. Such a supervoid, constituting a ∼3.5 σ fluctuation in the ΛCDM model, is a plausible cause for the Cold Spot.

We present the current standing of an investigation into the structure of the Milky Way. We use smoothed particle hydrodynamics (SPH) to simulate the ISM gas in the Milky Way under the effect of a number of different gravitational potentials representing the spiral arms and nuclear bars, both fixed and time-dependent. The gas is subject to ISM cooling and chemistry, enabling us to track the CO and HI density. We use a 3D grid-based radiative transfer code to simulate the emission from the SPH output, allowing for the construction of synthetic longitude-velocity maps as viewed from the Earth. By comparing these maps with the observed emission in CO and HI from the Milky Way ([Dame et al. 2001, Kalberla et al. 2005]), we can infer the arm/bar geometry that provides a best fit to our Galaxy. By doing so we aim to answer key questions concerning the morphology of the Milky Way such as the number of the spiral arms, the pattern speeds of the bar(s) and arms, the pitch angle of the arms and shape of the bar(s).

This paper presents SPLASH, a publicly available interactive visualisation tool for Smoothed Particle Hydrodynamics (SPH) simulations. Visualisation of SPH data is more complicated than for grid-based codes because the data are defined on a set of irregular points and therefore requires a mapping procedure to a two dimensional pixel array. This means that, in practise, many authors simply produce particle plots which offer a rather crude representation of the simulation output. Here we describe the techniques and algorithms which are utilised in SPLASH in order to provide the user with a fast, interactive and meaningful visualisation of one, two and three dimensional SPH results.

The success of central line-associated bloodstream infection (CLABSI) prevention programs in intensive care units (ICUs) has led to the expansion of surveillance at many hospitals. We sought to compare non-ICU CLABSI (nCLABSI) rates with national reports and describe methods of surveillance at several participating US institutions.

Design and Setting.

An electronic survey of several medical centers about infection surveillance practices and rate data for non-ICU Patients.

Participants.

Ten tertiary care hospitals.

Methods.

In March 2011, a survey was sent to 10 medical centers. The survey consisted of 12 questions regarding demographics and CLABSI surveillance methodology for non-ICU patients at each center. Participants were also asked to provide available rate and device utilization data.

Results.

Hospitals ranged in size from 238 to 1,400 total beds (median, 815). All hospitals reported using Centers for Disease Control and Prevention (CDC) definitions. Denominators were collected by different means: counting patients with central lines every day (5 hospitals), indirectly estimating on the basis of electronic orders (n = 4), or another automated method (n = 1). Rates of nCLABSI ranged from 0.2 to 4.2 infections per 1,000 catheter-days (median, 2.5). The national rate reported by the CDC using 2009 data from the National Healthcare Surveillance Network was 1.14 infections per 1,000 catheter-days.

Conclusions.

Only 2 hospitals were below the pooled CLABSI rate for inpatient wards; all others exceeded this rate. Possible explanations include differences in average central line utilization or hospital size in the impact of certain clinical risk factors notably absent from the definition and in interpretation and reporting practices. Further investigation is necessary to determine whether the national benchmarks are low or whether the hospitals surveyed here represent a selection of outliers.

K2NiF4-type iron(III) oxides show a very common form of magnetic ordering, XY antiferromagnetic ordering within the layers combined with layer stacking based on alignment of spins in alternate layers. The Ising antiferromagnet Ca2MnO4 has been reported to have a doubled c-axis (ca 24Å) in the magnetic structure and we have found a similar stacking in the XY antiferromagnet Sr2FeO3F. We show here that this unusual c-axis doubling is related to the exposure of the material to air and suggest that in both Sr2FeO3F and Ca2MnO4 it may be related to the occupation of interstitial sites.

Firstly, we give a historical overview of attempts to incorporate magnetic fields into the Smoothed Particle Hydrodynamics method by solving the equations of Magnetohydrodynamics (MHD), leading an honest assessment of the current state-of-the-art in terms of the limitations to performing realistic calculations of the star formation process. Secondly, we discuss the results of a recent comparison we have performed on simulations of driven, supersonic turbulence with SPH and Eulerian techniques. Finally we present some new results on the relationship between the density variance and the Mach number in supersonic turbulent flows, finding σ2ln ρ = ln(1 + b22 with b = 0.33 up to Mach 20, consistent with other numerical results at lower Mach number (Lemaster & Stone 2008) but inconsistent with observational constraints on σρ and in Taurus and IC5146.

In 2002, the Chicago Department of Public Health (CDPH; Chicago, Illinois) convened the Chicago-Area Neonatal MRSA Working Group (CANMWG) to discuss and compare approaches aimed at control of methicillin-resistant Staphylococcus aureus (MRSA) in neonatal intensive care units (NICUs). To better understand these issues on a regional level, the CDPH and the Evanston Department of Health and Human Services (EDHHS; Evanston, Illinois) began an investigation.

Design.

Survey to collect demographic, clinical, microbiologic, and epidemiologic data on individual cases and clusters of MRSA infection; an additional survey collected data on infection control practices.

Setting.

Level III NICUs at Chicago-area hospitals.

Participants.

Neonates and healthcare workers associated with the level III NICUs.

Methods.

From June 2001 through September 2002, the participating hospitals reported all clusters of MRSA infection in their respective level III NICUs to the CDPH and the EDHHS.

Results.

Thirteen clusters of MRSA infection were detected in level III NICUs, and 149 MRSA-positive infants were reported. Infection control surveys showed that hospitals took different approaches for controlling MRSA colonization and infection in NICUs.

Conclusion.

The CANMWG developed recommendations for the prevention and control of MRSA colonization and infection in the NICU and agreed that recommendations should expand to include future data generated by further studies. Continuing partnerships between hospital infection control personnel and public health professionals will be crucial in honing appropriate guidelines for effective approaches to the management and control of MRSA colonization and infection in NICUs.

Field experiments were conducted to determine the effect of different rates and application times of MON 37500 on downy brome control in winter wheat and on rotational crop injury. In southeastern Washington, MON 37500 applied postemergence at 36 to 72 g ai/ha in the fall and spring controlled downy brome 90 to 97% and 45 to 71%, respectively. MON 37500 was applied postemergence to winter wheat at 18, 36, and 72 g/ha during fall 1995 and spring 1996 near Moscow, ID; Pendleton, OR; and Endicott, WA, to determine its effect on rotational crops planted during spring 1997. At Pendleton, OR, fall applications of MON 37500 at 18, 36, and 72 g/ha applied to actively growing wheat reduced seed yield of spring barley and pea 13 to 59% and 26 to 29%, respectively, when these crops followed winter wheat in the rotation. At this site, spring applications of 36 and 72 g/ha reduced seed yield of spring barley 17 to 34%; when applied in the fall or spring, MON 37500 reduced canola yield 31 to 73%. MON 37500 at 18 g/ha in the spring reduced pea biomass 32% at Endicott. Aboveground biomass and seed yield of barley, pea, lentil, and mustard at Moscow were not affected by MON 37500 carryover. However, using a grain sorghum bioassay, predicted final concentrations of MON 37500 in soil at all three locations 360 d after treatment (DAT) was similar, ranging from 0.5 to 2 ng ai/g. In growth chamber herbicide dose–response studies, grain sorghum shoot height was reduced more at lower doses (0.025 to 5 ng/g) of MON 37500 in Pendleton soil than in soils from the other field locations. Perhaps the greater rotational crop injury observed at the Pendleton location was partly related to greater soil activity of the herbicide.