Overview

Description

Usage

require'bio'# To run an actual BLAST analysis:
# 1. create a BLAST factory
blast_factory=Bio::Blast.remote('blastp','nr-aa','-e 0.0001','genomenet')#or:
blast_factory=Bio::Blast::Remote.genomenet('blastp','nr-aa','-e 0.0001')# 2. run the actual BLAST by querying the factory
report=blast_factory.query(sequence_text)# Then, to parse the report, see Bio::Blast::Report

Available databases for Bio::Blast::Remote::GenomeNet

Up-to-date available databases can be obtained by using
Bio::Blast::Remote::GenomeNet.databases(program). Short descriptions of
databases