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This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - Quality Controlhttps://microasp.upsc.se/ngs_trainers/Materials/tree/master/Content/ChIP-Seq/Anna_Poetsch/Day1-1_OIST-HTSA-Workshop-October-2014_QC-practical.mdhttps://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-quality-controlThis practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts.Anna PoetschRNA-SeqChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

This practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts.

Scientific topics: RNA-Seq

Keywords: ChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

ChIP-seq analysis using R - Quality Control Walkthroughhttps://microasp.upsc.se/ngs_trainers/Materials/tree/master/Content/ChIP-Seq/Anna_Poetsch/Day1-1_OIST-HTSA-Workshop-October-2014_QC-practical_walkthrough.mdhttps://tess.elixir-europe.org/materials/chip-seq-analysis-using-r-quality-control-walkthroughThis practical illustrates steps that can be undertaken to assess the quality of the sequencing data. We will start from the fastq files and assess their quality in respect to potential contamination and technical artifacts.Anna PoetschRNA-SeqChIP-Seq, RNA-Seq, QC, Data-format, Experimental-design

Making Choices from https://github.com/swcarpentry/bc/tree/gh-pages/novice/matlab/04-cond.md.

Keywords: Matlab

Making Choiceshttps://github.com/swcarpentry/bc/tree/gh-pages/novice/matlab/04-cond.mdhttps://tess.elixir-europe.org/materials/making-choicesMaking Choices from https://github.com/swcarpentry/bc/tree/gh-pages/novice/matlab/04-cond.md.MatlabNovice

ChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a...

ChIP-seq analysis using Rhttps://microasp.upsc.se/ngs_trainers/Materials/tree/master/Content/ChIP-Seq/Anna_Poetsch/README.mdhttps://tess.elixir-europe.org/materials/chip-seq-analysis-using-rChIP-seq is the most commonly used technique to study binding profiles of chromatin proteins, such as TFs or histone modification patterns. This course is an introduction to ChIP-seq data, and data analysis mainly using R, some command line based peak-callers and online software. It provides a theoretical background and the means to perform peak calling and differential binding analysis.Anna Poetschbased partially on material from Bori Mifsud and Ernest TurroChIP-Seq, Experimental-design, QC, Data-format, Alignment, Peak-calling, Differential-binding, Visualisation, Annotation