=
Attach Citation Table from Google Scholar - Reads citations in the Goog=
le scholar profile for a given author and returns the citation information =
in the form of a series of tables for all the queried Google Citation user =
ID

Flickr=
Reader

Flickr reader - Reads a =
list of Flickr User IDs from a CSV file loaded into Sci2 and attempts to ga=
ther the image URLs of every image those users uploaded

Twitter Reader

Twitter reader - Reads =
a list of Twitter handles from a CSV file and attempts to pull their recent=
status updates and information about the individual status updates. The us=
er may also specify hashtags.

Extract=
Word Co-Occurrence Network =E2=80=93 Creates a weighted network where =
each node is a word and edges connect words to each other. The strength of =
an edge represents how often two words occur in the same body of text toget=
her.

Extract Co-Author N=
etwork =E2=80=93 Extracts a weighted network with authors as nodes and =
edge weights as the number of times those authors co-wrote a paper.

Extra=
ct Document Co-Citation Network =E2=80=93 Extracts a weighted network f=
rom a Paper Citation network, with papers as nodes and edge weights as the =
number of times two papers are cited together. ------------------------=
---------------------

Detect Duplicate No=
des =E2=80=93 Cleans graph data by detecting and preparing to merge nod=
es that are likely to represent the same entity.

Update Net=
work by Merging Nodes =E2=80=93 Creates a new network by running the al=
gorithm with both the Merge Table from "Detect Duplicate Nodes" an=
d the original network selected.

Preprocessing=

General

Extract Top N% Reco=
rds =E2=80=93 Returns the top N% rows of a table by selecting the perce=
ntage of rows to keep and column to sort by.

Extract Top N Record=
s =E2=80=93 Returns the top N rows of a table by selecting the number o=
f rows to keep and column to sort by.

Aggregate Data =E2=80=
=93 Summarizes the input table by column, allowing the aggregation of value=
s such as "Cited Reference Count," "Number of Pages," "Publication Year," "=
Times Cited," as well as values represented by many other delimiters.

Average Shortest Pat=
h =E2=80=93 Calculates the average length of the shortest path between =
pairs of nodes in a network.

Node Betweenne=
ss Centrality =E2=80=93 Appends a value to each node which correlates t=
o the number of shortest paths that node resides on. The more shortest path=
s between node-pairs a certain node resides on, the higher its betweenness =
centrality. ---------------------------------------------

---------------------------------------------

Extract K-Core =E2=80=
=93 Extracts the kth K-Core from a graph. The kth K-Core is what remains of=
the graph after every node with fewer than k edges connected to it is remo=
ved from the graph recursively.

Extract K-Core =
=E2=80=93 Extracts the kth K-Core from a graph. The kth K-Core is what rema=
ins of the graph after every node with fewer than k edges connected to it i=
s removed from the graph recursively.

Watts-Strogatz =
Small World =E2=80=93 Generates a graph whose majority of nodes are not=
directly connected to one another, but are still connected to one=
another via relatively few edges.

TARL (Topics, Aging=
and Recursive Linking) =E2=80=93 Incorporates "aging" to generate bipa=
rtite coevolving networks of authors and papers. Can also be applied to oth=
er datasets with different aging distribution.

R

Create an R Instance - This a=
lgorithm creates an R instance that is usable from the CIShell environment.=

Run Rgui - This algorithm opens the RGui =
for an already created R instance.

Choropleth Map =E2=80=
=93 Color-codes named regions on a geographical map in proportion to associ=
ated numeric data. Result is a PostScript file.

Topical

Map of Science via Jour=
nals - The Map of Science is a visual representation of a network of 55=
4 subdisciplines of science (grouped into 13 overarching disciplines) and t=
heir relationships to one another.