Just for snicks, I recreated (mkdir httpd) and re-ran the ISPConfig-2.2.35 install. The directories were again removed.

Below are the errors when I start the ispconfig server.

Code:

/etc/init.d/ispconfig_server: line 45: /root/ispconfig/httpd/bin/apachectl: No such file or directory
/etc/init.d/ispconfig_server: line 48: /root/ispconfig/php/php: No such file or directory
/etc/init.d/ispconfig_server: line 52: /home/admispconfig/ispconfig/tools/clamav/bin/freshclam: Permission denied

I do have nightly backups and can restore as necessary, but if there's a better way to recover from this and complete the upgrade, I would rather do that. Please let me know the best approach to complete the upgrade or fix the issue.

===> src/support
make[2]: Entering directory `/home/xyz/software/install_ispconfig/compile_aps/apache_1.3.41/src/support'
gcc -c -I../os/unix -I../include -DLINUX=22 -DHAVE_SET_DUMPABLE -DMOD_SSL=208131 -DUSE_HSREGEX -DEAPI `../apaci` htpasswd.c
htpasswd.c:101: error: conflicting types for â€˜getlineâ€™
/usr/include/stdio.h:653: note: previous declaration of â€˜getlineâ€™ was here
make[2]: *** [htpasswd.o] Error 1
make[2]: Leaving directory `/home/xyz/software/install_ispconfig/compile_aps/apache_1.3.41/src/support'
make[1]: *** [build-support] Error 1
make[1]: Leaving directory `/home/xyz/software/install_ispconfig/compile_aps/apache_1.3.41'
make: *** [build] Error 2
ERROR: Could not make Apache
cd: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
mv: cannot stat `binaries/aps.tar.gz': No such file or directory
mv: cannot stat `binaries/spamassassin.tar.gz': No such file or directory
mv: cannot stat `binaries/uudeview.tar.gz': No such file or directory
mv: cannot stat `binaries/clamav.tar.gz': No such file or directory
mv: cannot stat `binaries/cronolog': No such file or directory
mv: cannot stat `binaries/cronosplit': No such file or directory
mv: cannot stat `binaries/ispconfig_tcpserver': No such file or directory
mv: cannot stat `binaries/zip': No such file or directory
mv: cannot stat `binaries/unzip': No such file or directory
tar: spamassassin.tar.gz: Cannot open: No such file or directory
tar: Error is not recoverable: exiting now
tar: Child returned status 2
tar: Exiting with failure status due to previous errors
mv: cannot stat `spamassassin': No such file or directory
tar: uudeview.tar.gz: Cannot open: No such file or directory
tar: Error is not recoverable: exiting now
tar: Child returned status 2
tar: Exiting with failure status due to previous errors
mv: cannot stat `uudeview': No such file or directory
tar: clamav.tar.gz: Cannot open: No such file or directory
tar: Error is not recoverable: exiting now
tar: Child returned status 2
tar: Exiting with failure status due to previous errors
mv: cannot stat `clamav': No such file or directory
tar: aps.tar.gz: Cannot open: No such file or directory
tar: Error is not recoverable: exiting now
tar: Child returned status 2
tar: Exiting with failure status due to previous errors
mv: cannot stat `ispconfig_tmp': No such file or directory
cp: cannot stat `dist.info': No such file or directory
All prerequisites are fulfilled.
Here we go...
chmod: cannot access `./install.php': No such file or directory
./setup2: line 1090: mysql_config: No such file or directory
./setup2: line 1091: httpd: No such file or directory
./setup2: line 1092: httpd2: No such file or directory
./setup2: line 1093: httpd2: No such file or directory
./setup2: line 1103: ip_addresses: No such file or directory
./setup2: line 1105: /root/ispconfig/php/php: No such file or directory
./setup2: line 1106: /root/ispconfig/dist.info: No such file or directory
Restarting some services...
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
[Fri Apr 30 11:24:54 2010] [warn] NameVirtualHost *:80 has no VirtualHosts
./setup2: line 1143: [: ==: unary operator expected
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Shutting down ISPConfig system...
/etc/rc.d/init.d/ispconfig_server: line 66: /root/ispconfig/httpd/bin/apachectl: No such file or directory
ISPConfig system stopped!
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Starting ISPConfig system...
/etc/rc.d/init.d/ispconfig_server: line 45: /root/ispconfig/httpd/bin/apachectl: No such file or directory
/etc/rc.d/init.d/ispconfig_server: line 48: /root/ispconfig/php/php: No such file or directory
ISPConfig system is now up and running!
Congratulations! Your ISPConfig system is now installed. If you had to install quota, please take the steps described in the installation manual. Otherwise your system is now available without reboot.
./setup2: line 1189: cd: /home/xys/software/install_ispconfig/compile_aps/../..: No such file or directory