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I would reconsider running Thalia in the mainboard for starters. Second of all, Pillar of Flame seems like a very bad card in your sideboard imo. Mizzium Mortars is so much stronger in terms of removal power, and the exile effect is fairly minimal considering you already have Rest in Peace in your side. If I was to run Pillar of Flame in the sideboard of this deck, I would probably only run two of them. If you were to opt out of maindecking Thalia, I think Garruk, Primal Hunter or upping your Huntmaster/Thragtusk/Restoration Angel creatures to 4-ofs would probably be considerably stronger. My last piece of advice would be to replace the one-of Aurelia's Fury with another Bonfire of the Damned. Fury really doesn't fit into this deck as well as Bonfire does. I almost can't fathom it being more impactful other than the occasional counteract Terminus miracle trigger, but that's fairly irrelevant since you probably aren't holding your mana in this deck.

Overall, the deck looks insanely powerful. I have said since before GTC was released that Naya Midrange is going to eventually be the strongest deck in the format, and I still believe that. The deck just has so much power.

About the sideboard, I actually haven't taken a look at it since my initial draft of this deck which was before GTC was out so I'm not too worried about it yet but I do agree that the pillars need to be replaced. I'll probably go 2 or 3 Mizzium Mortars as a switch in for the fury/bonfire if I hit a frontline medic.

As for Thalia, I unfortunately see her as a much needed 2 drop to defend against the aggro heavy meta right now. She also has the added benefit of slowing control decks so she is a strong card against 2 deck types so if I were to drop her, it would have to be a similarly impactful low CC card.

While a miracle bonfire is certainly more powerful than an Aurelia's Fury 95% of the time, I like the idea of having it as a tap their creatures on their upkeep as well as a miracle stifle. It also doesn't require being top decked mid-late game for maximum effectiveness.

I actually really like Eric Froehlich's deck from the T8 of PT Montreal. Gyre Sage is really, really, good. I probably wouldn't run Flinthoof Boars Main because they get walled by Reckoners, but his deck seemed to be the best Naya Midrange/Zoo I've seen so far.

Maybe Switch the Slayers' Stronghold for a second Kessig Wolf Run? I realize if you draw doubles of the wolf run it is useless, but I feel like that is a card that you will want to have more consistently. It is just so good in these creature-based midrange decks.

Domri is for the potential card advantage as well as the fights on demand for board advantage. He works amazingly well with boros reckoner. His emblem would just be icing on the cake if I ever get to it.