Population growth and predicted global climate change are applying new, and increasing, pressure to mountain environments, but the consequences of these changes upon the biodiverse and vulnerable Tropical Andean ecosystems are poorly understood. This thesis explores past human-climate-ecosystem interactions using multi-proxy palaeolimnological investigations (fossil pollen, spore, charcoal and Chironomidae (midges); elemental abundance, colour spectra and magnetic susceptibility) of two sites in the eastern Bolivian Andes (Lake Challacaba and Laguna Khomer Kocha Upper) over the last c. 18,000 years. During the deglaciation and Holocene ecosystems were exposed to varying climatic stress levels, and pressures imposed by the development of human cultures.

The long-term response of the terrestrial and aquatic ecosystems, reconstructed from these lakes, has provided insights into how Tropical Andean ecosystems may respond to future changes in temperature, precipitation and human interference. The palaeoenvironmental data has implications for conservation management; it indicates that spatial and temporal variations in site sensitivity, exposure and resilience should be assessed, and that planting strategies should mimic the present day natural patchy distribution of Polylepis woodlands.