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Computes average alignment or feature density for over a specified window size across the genome and outputs a binary tiled data .tdf file, text .wig file, or both depending on inputs.
Used to create a track that can be displayed in IGV, for example as a bar chart.
Supported input file formats: .aligned, .bam, .bed, .psl, .pslx, and .sam

Command line: The igvtools commands can also be run from the command line. To install, download the igvtools zip file from the Downloads page. On Windows, enter the commands at an MS-DOS prompt (select Start>Run and type: cmd). On Mac, enter the commands in a terminal window (select Applications>Utilities>Terminal).