Overall, things look a bit better, but there are still some issues. Will likely eliminate sample 2112_lane_1_TGACCA from analysis and apply some additional sequence filtering, based on sequence length.

I ran TrimGalore (using the built-in FastQC option), with a hard trim of the last 2bp of each first read set that had previously had the 14bp hard trim and followed up with MultiQC for a summary of the FastQC reports.