The Bio-Analytic Resource for Plant Biology

Welcome to the Bio-Analytic Resource - the BAR! Below are user-friendly web-based tools for working with functional genomics and other data. Most are designed with the plant (mainly Arabidopsis) reseacher in mind, but a couple of them can be useful to the wider research community, e.g. Mouse eFP Browser and Human eFP Browser or BlastDigester. Click on the icon to read the partner paper to a given tool. Mouse-over a given link for further information.

Other Genomic Tools

Click the printer icon for printing tips. Further information on the above tools is available by clicking the Help icon on any page. For Arabidopsis queries, the following annotation and lookup tables are used:

BAR Version 14-05

• The MapMan data used by Classification SuperViewer is updated to Ath_AGI_LOCUS_TAIR10_Aug2012.txt. [most recent version as of 4 June 2013].

• Promomer data sets are updated to TAIR10. [most recent version as of 4 June 2013].

• Arabidopsis Annotation from TAIR, called TAIR10_pep_20101209, which is merged with Gene Aliases from TAIR, called gene_aliases.20120207.txt. [most recent versions as of 21 September 2012]

• Arabidopsis GO Classification from TAIR, ATH_GO_GOSLIM.20120925.txt. [most recent version as of September 25, 2012].

• Affymetrix probe set identifier to AGI number lookup table from TAIR dated 20 December 2010. It was called affy_ATH1_array_elements-2010-12-20.txt. [most recent version as of 21 September 2012]

• Documented and predicted subcellular localizations from Dr. A. Harvey Millar and colleagues at the University of Western Australia. SUBA2.0 [updated March 2009]

• Documented and predicted protein structures in ePlant are respectively from PDB and Dr. Lawrence Kelley at Imperial College, London, in the UK, computed using his Phyre algorithm [updated 19 November 2009]

• Poplar annotations and lookup from Chung-Jui Tsai, University of Georgia, AffyAnnotationV3_102707mtu.csv [updated October 2007]